10 20 30 40 50 60 70 80 2F97 - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER GENE REGULATION 05-DEC-05 2F97
TITLE EFFECTOR BINDING DOMAIN OF BENM (CRYSTALS GENERATED FROM HIGH PH TITLE 2 CONDITIONS)
COMPND MOL_ID: 1; COMPND 2 MOLECULE: HTH-TYPE TRANSCRIPTIONAL REGULATOR BENM; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: BEN AND CAT OPERON TRANSCRIPTIONAL REGULATOR; COMPND 5 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ACINETOBACTER BAYLYI; SOURCE 3 ORGANISM_TAXID: 202950; SOURCE 4 STRAIN: ADP1; SOURCE 5 GENE: BENM, BENR; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: DE3(BL21); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET21B
KEYWDS BENM, LYSR-TYPE REGULATOR, TETRAMERIZATION, EFFECTOR BINDING DOMAIN, KEYWDS 2 INDUCER BINDING DOMAIN, GENE REGULATION
EXPDTA X-RAY DIFFRACTION
AUTHOR O.C.EZEZIKA,S.HADDAD,E.L.NEIDLE,C.MOMANY
REVDAT 4 13-JUL-11 2F97 1 VERSN REVDAT 3 08-SEP-10 2F97 1 JRNL REVDAT 2 24-FEB-09 2F97 1 VERSN REVDAT 1 19-DEC-06 2F97 0
JRNL AUTH O.C.EZEZIKA,S.HADDAD,E.L.NEIDLE,C.MOMANY JRNL TITL OLIGOMERIZATION OF BENM, A LYSR-TYPE TRANSCRIPTIONAL JRNL TITL 2 REGULATOR: STRUCTURAL BASIS FOR THE AGGREGATION OF PROTEINS JRNL TITL 3 IN THIS FAMILY. JRNL REF ACTA CRYSTALLOGR.,SECT.F V. 63 361 2007 JRNL REFN ESSN 1744-3091 JRNL PMID 17565172 JRNL DOI 10.1107/S1744309107019185
REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 TITL CRYSTALLIZATION OF THE EFFECTOR-BINDING DOMAINS OF BENM AND REMARK 1 TITL 2 CATM, LYSR-TYPE TRANSCRIPTIONAL REGULATORS FROM REMARK 1 TITL 3 ACINETOBACTER SP. ADP1. REMARK 1 REF ACTA CRYSTALLOGR.,SECT.D V. 60 105 2004 REMARK 1 REFN ISSN 0907-4449
REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 70.01 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 23294 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.178 REMARK 3 R VALUE (WORKING SET) : 0.176 REMARK 3 FREE R VALUE : 0.209 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.969 REMARK 3 FREE R VALUE TEST SET COUNT : 1218 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.26 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1625 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.07 REMARK 3 BIN R VALUE (WORKING SET) : 0.2420 REMARK 3 BIN FREE R VALUE SET COUNT : 86 REMARK 3 BIN FREE R VALUE : 0.3060 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1722 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 44 REMARK 3 SOLVENT ATOMS : 252 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 43.75 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 42.30 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.22300 REMARK 3 B22 (A**2) : 0.22300 REMARK 3 B33 (A**2) : -0.44700 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.146 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.140 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.090 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.520 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.958 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.954 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1846 ; 0.007 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 23 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2495 ; 0.915 ; 1.996 REMARK 3 BOND ANGLES OTHERS (DEGREES): 50 ; 0.309 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 225 ; 4.812 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 80 ;36.267 ;23.875 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 320 ;12.528 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ;14.525 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 278 ; 0.057 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1373 ; 0.002 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 851 ; 0.162 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 24 ; 0.097 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1265 ; 0.295 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 4 ; 0.075 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 191 ; 0.099 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 54 ; 0.152 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 1 ; 0.217 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 33 ; 0.100 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1155 ; 0.515 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1813 ; 1.072 ; 5.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 779 ; 2.099 ; 7.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 682 ; 3.242 ;10.000 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 14 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 89 A 98 REMARK 3 ORIGIN FOR THE GROUP (A): 14.8470 26.6240 -4.1530 REMARK 3 T TENSOR REMARK 3 T11: -0.1784 T22: 0.1153 REMARK 3 T33: -0.0323 T12: 0.0136 REMARK 3 T13: -0.0172 T23: 0.0201 REMARK 3 L TENSOR REMARK 3 L11: 12.7714 L22: 4.8933 REMARK 3 L33: 6.1801 L12: -3.0005 REMARK 3 L13: 3.7733 L23: -3.4545 REMARK 3 S TENSOR REMARK 3 S11: 0.0414 S12: 0.9866 S13: 0.0051 REMARK 3 S21: -0.2401 S22: 0.0111 S23: 0.3117 REMARK 3 S31: 0.0516 S32: -0.3357 S33: -0.0524 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 99 A 113 REMARK 3 ORIGIN FOR THE GROUP (A): 19.5000 15.6760 -1.4800 REMARK 3 T TENSOR REMARK 3 T11: -0.1227 T22: 0.0217 REMARK 3 T33: -0.0309 T12: -0.0446 REMARK 3 T13: 0.0245 T23: 0.0012 REMARK 3 L TENSOR REMARK 3 L11: 3.2913 L22: 2.6535 REMARK 3 L33: 3.7175 L12: -0.7757 REMARK 3 L13: 0.2296 L23: -0.0681 REMARK 3 S TENSOR REMARK 3 S11: -0.1124 S12: 0.3522 S13: -0.2240 REMARK 3 S21: -0.0904 S22: 0.0214 S23: 0.0413 REMARK 3 S31: 0.2962 S32: -0.1827 S33: 0.0911 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 114 A 147 REMARK 3 ORIGIN FOR THE GROUP (A): 15.9850 27.8040 0.0540 REMARK 3 T TENSOR REMARK 3 T11: -0.1819 T22: 0.0521 REMARK 3 T33: -0.0418 T12: 0.0098 REMARK 3 T13: -0.0192 T23: 0.0460 REMARK 3 L TENSOR REMARK 3 L11: 2.4072 L22: 4.0503 REMARK 3 L33: 3.3054 L12: -1.0521 REMARK 3 L13: -0.0035 L23: -0.4539 REMARK 3 S TENSOR REMARK 3 S11: -0.1343 S12: 0.3108 S13: 0.1645 REMARK 3 S21: -0.0629 S22: 0.1122 S23: 0.0415 REMARK 3 S31: -0.2612 S32: -0.2966 S33: 0.0220 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 148 A 155 REMARK 3 ORIGIN FOR THE GROUP (A): 13.0030 31.2530 14.0440 REMARK 3 T TENSOR REMARK 3 T11: 0.0011 T22: 0.1616 REMARK 3 T33: -0.0279 T12: 0.1372 REMARK 3 T13: -0.0065 T23: -0.0092 REMARK 3 L TENSOR REMARK 3 L11: 5.6930 L22: 2.4971 REMARK 3 L33: 8.4255 L12: -0.7818 REMARK 3 L13: 6.6716 L23: 0.2883 REMARK 3 S TENSOR REMARK 3 S11: -0.4786 S12: -0.0876 S13: -0.1042 REMARK 3 S21: 0.8069 S22: 0.3919 S23: 0.2971 REMARK 3 S31: -0.6824 S32: -0.2222 S33: 0.0867 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 156 A 180 REMARK 3 ORIGIN FOR THE GROUP (A): 33.3200 11.1980 15.5080 REMARK 3 T TENSOR REMARK 3 T11: 0.0057 T22: -0.0162 REMARK 3 T33: -0.0379 T12: 0.0428 REMARK 3 T13: 0.0311 T23: 0.0616 REMARK 3 L TENSOR REMARK 3 L11: 6.4853 L22: 1.3190 REMARK 3 L33: 1.4216 L12: -2.1320 REMARK 3 L13: 0.6286 L23: -0.0326 REMARK 3 S TENSOR REMARK 3 S11: -0.2559 S12: -0.2744 S13: -0.3668 REMARK 3 S21: 0.1844 S22: 0.1384 S23: 0.0583 REMARK 3 S31: 0.3490 S32: -0.0057 S33: 0.1175 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 181 A 198 REMARK 3 ORIGIN FOR THE GROUP (A): 38.8260 19.5050 18.7270 REMARK 3 T TENSOR REMARK 3 T11: -0.0851 T22: 0.0095 REMARK 3 T33: -0.0615 T12: 0.0707 REMARK 3 T13: -0.0015 T23: 0.0097 REMARK 3 L TENSOR REMARK 3 L11: 2.6130 L22: 3.3739 REMARK 3 L33: 5.3761 L12: -0.0688 REMARK 3 L13: 0.6723 L23: -1.7364 REMARK 3 S TENSOR REMARK 3 S11: -0.1497 S12: -0.1970 S13: 0.1057 REMARK 3 S21: 0.4634 S22: 0.1105 S23: -0.1459 REMARK 3 S31: -0.1066 S32: 0.3204 S33: 0.0392 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 199 A 203 REMARK 3 ORIGIN FOR THE GROUP (A): 29.1460 29.4990 11.2400 REMARK 3 T TENSOR REMARK 3 T11: -0.0603 T22: 0.0117 REMARK 3 T33: 0.0249 T12: 0.0606 REMARK 3 T13: -0.0160 T23: 0.0482 REMARK 3 L TENSOR REMARK 3 L11: 8.4812 L22: 14.9217 REMARK 3 L33: 6.3217 L12: -10.2871 REMARK 3 L13: 2.9821 L23: -0.0269 REMARK 3 S TENSOR REMARK 3 S11: -0.1353 S12: 0.3285 S13: 0.4585 REMARK 3 S21: 0.2174 S22: -0.0277 S23: -0.2271 REMARK 3 S31: -0.4168 S32: -0.0362 S33: 0.1631 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 204 A 216 REMARK 3 ORIGIN FOR THE GROUP (A): 30.9910 23.3560 22.0670 REMARK 3 T TENSOR REMARK 3 T11: -0.0070 T22: 0.0167 REMARK 3 T33: -0.0429 T12: 0.0904 REMARK 3 T13: 0.0103 T23: 0.0008 REMARK 3 L TENSOR REMARK 3 L11: 0.0706 L22: 6.0767 REMARK 3 L33: 11.0070 L12: -0.5995 REMARK 3 L13: 0.1755 L23: -4.7176 REMARK 3 S TENSOR REMARK 3 S11: -0.1246 S12: -0.1555 S13: 0.1777 REMARK 3 S21: 0.4320 S22: 0.2504 S23: 0.1815 REMARK 3 S31: -0.1801 S32: -0.1606 S33: -0.1257 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 217 A 236 REMARK 3 ORIGIN FOR THE GROUP (A): 41.0160 23.4110 10.8070 REMARK 3 T TENSOR REMARK 3 T11: -0.1191 T22: -0.0058 REMARK 3 T33: -0.0237 T12: 0.0302 REMARK 3 T13: -0.0190 T23: 0.0049 REMARK 3 L TENSOR REMARK 3 L11: 1.9328 L22: 3.5037 REMARK 3 L33: 4.4695 L12: 0.0527 REMARK 3 L13: -0.6612 L23: -0.8133 REMARK 3 S TENSOR REMARK 3 S11: -0.0655 S12: -0.0661 S13: 0.2937 REMARK 3 S21: 0.1833 S22: 0.0920 S23: -0.0372 REMARK 3 S31: -0.1677 S32: 0.2414 S33: -0.0265 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 237 A 268 REMARK 3 ORIGIN FOR THE GROUP (A): 35.2270 12.8910 12.3070 REMARK 3 T TENSOR REMARK 3 T11: -0.0470 T22: -0.0367 REMARK 3 T33: -0.0416 T12: 0.0341 REMARK 3 T13: 0.0128 T23: 0.0422 REMARK 3 L TENSOR REMARK 3 L11: 2.0484 L22: 1.2369 REMARK 3 L33: 2.8247 L12: -0.1877 REMARK 3 L13: -0.3636 L23: 0.1643 REMARK 3 S TENSOR REMARK 3 S11: -0.1558 S12: -0.1064 S13: -0.1937 REMARK 3 S21: 0.0670 S22: 0.0460 S23: 0.0236 REMARK 3 S31: 0.3304 S32: 0.0236 S33: 0.1099 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 269 A 277 REMARK 3 ORIGIN FOR THE GROUP (A): 10.3740 26.2400 8.4390 REMARK 3 T TENSOR REMARK 3 T11: -0.1449 T22: 0.0899 REMARK 3 T33: -0.0556 T12: 0.0258 REMARK 3 T13: 0.0287 T23: -0.0042 REMARK 3 L TENSOR REMARK 3 L11: 15.4661 L22: 7.5059 REMARK 3 L33: 5.7545 L12: -6.9214 REMARK 3 L13: 7.7277 L23: -3.0213 REMARK 3 S TENSOR REMARK 3 S11: -0.4495 S12: -0.2699 S13: 0.5757 REMARK 3 S21: 0.4620 S22: 0.0438 S23: 0.0086 REMARK 3 S31: -0.1922 S32: -0.7696 S33: 0.4056 REMARK 3 REMARK 3 TLS GROUP : 12 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 278 A 286 REMARK 3 ORIGIN FOR THE GROUP (A): 5.0080 20.9930 0.9000 REMARK 3 T TENSOR REMARK 3 T11: -0.1991 T22: 0.2572 REMARK 3 T33: 0.0224 T12: -0.0607 REMARK 3 T13: -0.0065 T23: -0.0120 REMARK 3 L TENSOR REMARK 3 L11: 12.5920 L22: 10.4245 REMARK 3 L33: 3.8881 L12: -5.4235 REMARK 3 L13: 4.0993 L23: -2.0083 REMARK 3 S TENSOR REMARK 3 S11: -0.1057 S12: 0.2119 S13: -0.2173 REMARK 3 S21: -0.0716 S22: 0.1165 S23: 0.6445 REMARK 3 S31: 0.1532 S32: -0.6534 S33: -0.0107 REMARK 3 REMARK 3 TLS GROUP : 13 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 287 A 294 REMARK 3 ORIGIN FOR THE GROUP (A): 11.0530 11.1050 4.0280 REMARK 3 T TENSOR REMARK 3 T11: -0.1123 T22: 0.0981 REMARK 3 T33: 0.0772 T12: -0.1185 REMARK 3 T13: 0.0393 T23: -0.0018 REMARK 3 L TENSOR REMARK 3 L11: 6.3539 L22: 10.9460 REMARK 3 L33: 10.6229 L12: -4.0770 REMARK 3 L13: -2.5497 L23: -5.0960 REMARK 3 S TENSOR REMARK 3 S11: -0.2597 S12: 0.3418 S13: -0.9128 REMARK 3 S21: 0.3962 S22: 0.2068 S23: 0.9332 REMARK 3 S31: 0.5301 S32: -1.0321 S33: 0.0529 REMARK 3 REMARK 3 TLS GROUP : 14 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 295 A 304 REMARK 3 ORIGIN FOR THE GROUP (A): 12.4770 8.5600 8.7700 REMARK 3 T TENSOR REMARK 3 T11: -0.0801 T22: 0.0183 REMARK 3 T33: 0.0599 T12: -0.1176 REMARK 3 T13: 0.0386 T23: 0.0108 REMARK 3 L TENSOR REMARK 3 L11: 7.9356 L22: 26.6616 REMARK 3 L33: 9.0383 L12: -3.5073 REMARK 3 L13: -6.5431 L23: 0.6413 REMARK 3 S TENSOR REMARK 3 S11: -0.4354 S12: 0.0726 S13: -1.2085 REMARK 3 S21: 0.6133 S22: -0.1079 S23: 1.0119 REMARK 3 S31: 0.8810 S32: -0.6399 S33: 0.5434 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL PLUS MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS
REMARK 4 REMARK 4 2F97 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-DEC-05. REMARK 100 THE RCSB ID CODE IS RCSB035608.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 9 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : .97935 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24724 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 70.014 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 20.900 REMARK 200 R MERGE (I) : 0.06300 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 65.9600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.28 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.76900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 5.920 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 2F6G REMARK 200 REMARK 200 REMARK: NULL
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 71.77 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.36 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 8000, TAPS, LICL, IMIDAZOLE, TRIS, REMARK 280 NACL, CIS,CIS-MUCONATE, GLYCEROL, PH 9, MICROBATCH UNDER OIL
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+3/4 REMARK 290 4555 Y,-X,Z+1/4 REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z+1/2 REMARK 290 7555 Y,X,-Z+1/4 REMARK 290 8555 -Y,-X,-Z+3/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 93.84150 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 140.76225 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 46.92075 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 93.84150 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 46.92075 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 140.76225 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A DIMER GENERATED FROM THE REMARK 300 MONOMER IN THE ASYMMETRIC UNIT BY APPLYING THE CRYSTALLOGRAPHIC REMARK 300 SYMMETRY OPERATION -X, Y,-Z.
REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 70.04800 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000
REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A1040 LIES ON A SPECIAL POSITION.
REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 81 REMARK 465 THR A 82 REMARK 465 LYS A 83 REMARK 465 ARG A 84 REMARK 465 ILE A 85 REMARK 465 ALA A 86 REMARK 465 SER A 87 REMARK 465 VAL A 88 REMARK 465 LEU A 305 REMARK 465 GLU A 306 REMARK 465 HIS A 307 REMARK 465 HIS A 308 REMARK 465 HIS A 309 REMARK 465 HIS A 310 REMARK 465 HIS A 311 REMARK 465 HIS A 312
REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1167 DISTANCE = 5.11 ANGSTROMS REMARK 525 HOH A1178 DISTANCE = 5.61 ANGSTROMS REMARK 525 HOH A1185 DISTANCE = 5.03 ANGSTROMS REMARK 525 HOH A1219 DISTANCE = 5.16 ANGSTROMS REMARK 525 HOH A1237 DISTANCE = 6.63 ANGSTROMS
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 1003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PG4 A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PG4 A 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG A 1004 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG A 1005
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2F6G RELATED DB: PDB REMARK 900 RELATED ID: 2F6P RELATED DB: PDB REMARK 900 RELATED ID: 2F78 RELATED DB: PDB REMARK 900 RELATED ID: 2F7A RELATED DB: PDB REMARK 900 RELATED ID: 2F7B RELATED DB: PDB REMARK 900 RELATED ID: 2F7C RELATED DB: PDB REMARK 900 RELATED ID: 2F8D RELATED DB: PDB
DBREF 2F97 A 81 304 UNP O68014 BENM_ACIAD 81 304
SEQADV 2F97 LEU A 305 UNP O68014 CLONING ARTIFACT SEQADV 2F97 GLU A 306 UNP O68014 CLONING ARTIFACT SEQADV 2F97 HIS A 307 UNP O68014 EXPRESSION TAG SEQADV 2F97 HIS A 308 UNP O68014 EXPRESSION TAG SEQADV 2F97 HIS A 309 UNP O68014 EXPRESSION TAG SEQADV 2F97 HIS A 310 UNP O68014 EXPRESSION TAG SEQADV 2F97 HIS A 311 UNP O68014 EXPRESSION TAG SEQADV 2F97 HIS A 312 UNP O68014 EXPRESSION TAG
SEQRES 1 A 232 MET THR LYS ARG ILE ALA SER VAL GLU LYS THR ILE ARG SEQRES 2 A 232 ILE GLY PHE VAL GLY SER LEU LEU PHE GLY LEU LEU PRO SEQRES 3 A 232 ARG ILE ILE HIS LEU TYR ARG GLN ALA HIS PRO ASN LEU SEQRES 4 A 232 ARG ILE GLU LEU TYR GLU MET GLY THR LYS ALA GLN THR SEQRES 5 A 232 GLU ALA LEU LYS GLU GLY ARG ILE ASP ALA GLY PHE GLY SEQRES 6 A 232 ARG LEU LYS ILE SER ASP PRO ALA ILE LYS ARG THR LEU SEQRES 7 A 232 LEU ARG ASN GLU ARG LEU MET VAL ALA VAL HIS ALA SER SEQRES 8 A 232 HIS PRO LEU ASN GLN MET LYS ASP LYS GLY VAL HIS LEU SEQRES 9 A 232 ASN ASP LEU ILE ASP GLU LYS ILE LEU LEU TYR PRO SER SEQRES 10 A 232 SER PRO LYS PRO ASN PHE SER THR HIS VAL MET ASN ILE SEQRES 11 A 232 PHE SER ASP HIS GLY LEU GLU PRO THR LYS ILE ASN GLU SEQRES 12 A 232 VAL ARG GLU VAL GLN LEU ALA LEU GLY LEU VAL ALA ALA SEQRES 13 A 232 GLY GLU GLY ILE SER LEU VAL PRO ALA SER THR GLN SER SEQRES 14 A 232 ILE GLN LEU PHE ASN LEU SER TYR VAL PRO LEU LEU ASP SEQRES 15 A 232 PRO ASP ALA ILE THR PRO ILE TYR ILE ALA VAL ARG ASN SEQRES 16 A 232 MET GLU GLU SER THR TYR ILE TYR SER LEU TYR GLU THR SEQRES 17 A 232 ILE ARG GLN ILE TYR ALA TYR GLU GLY PHE THR GLU PRO SEQRES 18 A 232 PRO ASN TRP LEU GLU HIS HIS HIS HIS HIS HIS
HET ACT A1003 7 HET PG4 A1001 13 HET PG4 A1002 13 HET PEG A1004 17 HET PEG A1005 17
HETNAM ACT ACETATE ION HETNAM PG4 TETRAETHYLENE GLYCOL HETNAM PEG DI(HYDROXYETHYL)ETHER
FORMUL 2 ACT C2 H3 O2 1- FORMUL 3 PG4 2(C8 H18 O5) FORMUL 5 PEG 2(C4 H10 O3) FORMUL 7 HOH *252(H2 O)
HELIX 1 1 GLY A 98 LEU A 101 5 4 HELIX 2 2 LEU A 104 HIS A 116 1 13 HELIX 3 3 GLY A 127 GLU A 137 1 11 HELIX 4 4 HIS A 172 LYS A 178 5 7 HELIX 5 5 HIS A 183 ILE A 188 5 6 HELIX 6 6 ASN A 202 HIS A 214 1 13 HELIX 7 7 GLU A 226 ALA A 236 1 11 HELIX 8 8 SER A 246 ILE A 250 5 5 HELIX 9 9 SER A 279 GLY A 297 1 19
SHEET 1 A 8 ARG A 120 GLU A 125 0 SHEET 2 A 8 THR A 91 PHE A 96 1 N ILE A 94 O GLU A 122 SHEET 3 A 8 ALA A 142 GLY A 145 1 O ALA A 142 N GLY A 95 SHEET 4 A 8 ILE A 266 ARG A 274 -1 O TYR A 270 N GLY A 145 SHEET 5 A 8 ILE A 154 HIS A 169 -1 N GLU A 162 O THR A 267 SHEET 6 A 8 ILE A 240 PRO A 244 -1 O SER A 241 N ALA A 167 SHEET 7 A 8 ILE A 192 LEU A 194 1 N LEU A 193 O ILE A 240 SHEET 8 A 8 ILE A 221 GLU A 223 1 O ASN A 222 N LEU A 194 SHEET 1 B 6 ARG A 120 GLU A 125 0 SHEET 2 B 6 THR A 91 PHE A 96 1 N ILE A 94 O GLU A 122 SHEET 3 B 6 ALA A 142 GLY A 145 1 O ALA A 142 N GLY A 95 SHEET 4 B 6 ILE A 266 ARG A 274 -1 O TYR A 270 N GLY A 145 SHEET 5 B 6 ILE A 154 HIS A 169 -1 N GLU A 162 O THR A 267 SHEET 6 B 6 LEU A 255 PRO A 259 -1 O VAL A 258 N VAL A 166
CISPEP 1 TYR A 195 PRO A 196 0 -7.15 CISPEP 2 LYS A 200 PRO A 201 0 -2.42
SITE 1 AC1 6 LEU A 105 ILE A 108 PHE A 144 LEU A 159 SITE 2 AC1 6 TYR A 293 HOH A1014 SITE 1 AC2 10 GLY A 98 GLU A 125 MET A 126 GLY A 127 SITE 2 AC2 10 SER A 197 SER A 198 PRO A 199 ARG A 225 SITE 3 AC2 10 HOH A1135 HOH A1164 SITE 1 AC3 5 ARG A 93 TYR A 124 GLY A 138 ARG A 139 SITE 2 AC3 5 HOH A1118 SITE 1 AC4 2 HIS A 116 TYR A 283 SITE 1 AC5 5 LYS A 155 ASN A 275 GLU A 277 TYR A 286 SITE 2 AC5 5 TRP A 304
CRYST1 70.048 70.048 187.683 90.00 90.00 90.00 P 43 2 2 8
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.014280 0.000000 0.000000 0.00000
SCALE2 0.000000 0.014280 0.000000 0.00000
SCALE3 0.000000 0.000000 0.005330 0.00000