10 20 30 40 50 60 70 80 2F8E - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER TRANSFERASE 02-DEC-05 2F8E
TITLE FOOT AND MOUTH DISEASE VIRUS RNA-DEPENDENT RNA POLYMERASE TITLE 2 IN COMPLEX WITH URIDYLYLATED VPG PROTEIN
COMPND MOL_ID: 1; COMPND 2 MOLECULE: RNA-DPENDENT RNA POLYMERASE; COMPND 3 CHAIN: X; COMPND 4 EC: 2.7.7.48; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: VPG PROTEIN; COMPND 8 CHAIN: A; COMPND 9 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: FOOT-AND-MOUTH DISEASE VIRUS - TYPE C; SOURCE 3 ORGANISM_TAXID: 12116; SOURCE 4 STRAIN: C-S8C1; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET28A; SOURCE 9 MOL_ID: 2; SOURCE 10 SYNTHETIC: YES; SOURCE 11 OTHER_DETAILS: VPG WAS PREPARED BY SOLID PHASE PEPTIDE SOURCE 12 SYNTHESIS
KEYWDS FOOT AND MOUTH DISEASE VIRUS, RNA-DEPENDENT RNA POLYMERASE , KEYWDS 2 VPG PROTEIN, PROTEIN PRIMER, TRANSFERASE
EXPDTA X-RAY DIFFRACTION
AUTHOR C.FERRER-ORTA,A.ARIAS,R.PEREZ-LUQUE,C.ESCARMIS,E.DOMINGO, AUTHOR 2 N.VERDAGUER
REVDAT 2 24-FEB-09 2F8E 1 VERSN REVDAT 1 28-MAR-06 2F8E 0
JRNL AUTH C.FERRER-ORTA,A.ARIAS,R.AGUDO,R.PEREZ-LUQUE, JRNL AUTH 2 C.ESCARMIS,E.DOMINGO,N.VERDAGUER JRNL TITL THE STRUCTURE OF A PROTEIN PRIMER-POLYMERASE JRNL TITL 2 COMPLEX IN THE INITIATION OF GENOME REPLICATION JRNL REF EMBO J. V. 25 880 2006 JRNL REFN ISSN 0261-4189 JRNL PMID 16456546 JRNL DOI 10.1038/SJ.EMBOJ.7600971
REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH C.FERRER-ORTA,A.ARIAS,R.PEREZ-LUQUE,C.ESCARMIS, REMARK 1 AUTH 2 E.DOMINGO,N.VERDAGUER REMARK 1 TITL STRUCTURE OF FOOT-AND-MOUTH DISEASE VIRUS REMARK 1 TITL 2 RNA-DEPENDENT RNA POLYMERASE AND ITS COMPLEX WITH REMARK 1 TITL 3 A TEMPLATE-PRIMER RNA REMARK 1 REF J.BIOL.CHEM. V. 279 47212 2004 REMARK 1 REFN ISSN 0021-9258 REMARK 1 PMID 15294895 REMARK 1 DOI 10.1074/JBC.M405465200
REMARK 2 REMARK 2 RESOLUTION. 2.90 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 11125 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.237 REMARK 3 R VALUE (WORKING SET) : 0.234 REMARK 3 FREE R VALUE : 0.284 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 555 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.97 REMARK 3 REFLECTION IN BIN (WORKING SET) : 800 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.95 REMARK 3 BIN R VALUE (WORKING SET) : 0.3230 REMARK 3 BIN FREE R VALUE SET COUNT : 46 REMARK 3 BIN FREE R VALUE : 0.3320 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3859 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 22 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 60.83 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.02000 REMARK 3 B22 (A**2) : 1.02000 REMARK 3 B33 (A**2) : -1.53000 REMARK 3 B12 (A**2) : 0.51000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.504 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.432 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 51.876 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.932 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.890 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3830 ; 0.007 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5186 ; 0.998 ; 1.949 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 473 ; 4.976 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 182 ;37.271 ;23.407 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 639 ;18.547 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 28 ;15.874 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 563 ; 0.071 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2941 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1793 ; 0.201 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2647 ; 0.303 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 114 ; 0.138 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 36 ; 0.163 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 4 ; 0.273 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2399 ; 0.275 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3791 ; 0.496 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1591 ; 0.500 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1395 ; 0.858 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS
REMARK 4 REMARK 4 2F8E COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 19-DEC-05. REMARK 100 THE RCSB ID CODE IS RCSB035579.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-FEB-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-4 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11795 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.900 REMARK 200 RESOLUTION RANGE LOW (A) : 81.650 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.09500 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 7.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.45500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: FOOT AND MOUTH DISEASE VIRUS REMARK 200 REMARK 200 REMARK: NULL
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.48 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 33% PEG4K, 0.2M AMMONIUM ACETATE, REMARK 280 0.1M SODIUM CITRATE PH 5.6, 4% BUTYROLACTONE, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 293K
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 66.48400 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 33.24200 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 33.24200 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 66.48400 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA.
REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3080 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20990 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -22.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: X, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 1016 REMARK 465 ALA A 1017 REMARK 465 LYS A 1018 REMARK 465 LEU A 1019 REMARK 465 PRO A 1020 REMARK 465 GLN A 1021 REMARK 465 ALA A 1022 REMARK 465 GLU A 1023
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 CE MET X 16 O TYR X 394 5565 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL X 9 -70.05 -111.01 REMARK 500 GLU X 10 -71.69 -135.92 REMARK 500 GLU X 33 41.96 -79.48 REMARK 500 ASN X 41 0.06 -67.19 REMARK 500 GLU X 48 97.42 -32.28 REMARK 500 LEU X 123 31.59 -85.58 REMARK 500 GLN X 124 -23.88 -149.97 REMARK 500 ASN X 136 -73.20 -76.75 REMARK 500 VAL X 139 -169.52 -109.60 REMARK 500 LYS X 177 38.84 -89.16 REMARK 500 PHE X 261 49.95 -98.35 REMARK 500 PRO X 269 -19.71 -49.33 REMARK 500 GLU X 286 -120.92 50.31 REMARK 500 ASP X 371 2.65 49.84 REMARK 500 PHE X 374 95.52 -61.29 REMARK 500 PRO A1002 -116.30 -81.50 REMARK 500 GLU A1008 -79.14 -146.29 REMARK 500 ARG A1011 -157.35 52.42 REMARK 500 PRO A1012 -64.77 -96.58 REMARK 500 LEU A1013 -157.30 -150.08 REMARK 500 REMARK 500 REMARK: NULL
REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 U5P A 2003
REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG X 502 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 U5P A2003 O1P REMARK 620 2 TYR A1003 OH 50.3 REMARK 620 N 1
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 501 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG X 502 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE U5P A 2003
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1U09 RELATED DB: PDB REMARK 900 FOOT AND MOUTH DISEASE VIRUS RNA-DEPENDENT RNA POLYMERASE REMARK 900 RELATED ID: 1WNE RELATED DB: PDB REMARK 900 FOOT AND MOUTH DISEASE VIRUS RNA-DEPENDENT RNA POLYMERASE REMARK 900 IN COMPLEX WITH TEMPLATE-PRIMER RNA REMARK 900 RELATED ID: 2D7S RELATED DB: PDB REMARK 900 FOOT AND MOUTH DISEASE VIRUS RNA-DEPENDENT RNA POLYMERASE REMARK 900 IN COMPLEX WITH NON-URIDYLYLATED VPG PROTEIN
DBREF 2F8E X 1 470 GB 6318192 CAB60266 1858 2327 DBREF 2F8E A 1001 1023 PDB 2F8E 2F8E 1001 1023
SEQADV 2F8E ALA X 471 GB 6318192 CLONING ARTIFACT SEQADV 2F8E ALA X 472 GB 6318192 CLONING ARTIFACT SEQADV 2F8E LEU X 473 GB 6318192 CLONING ARTIFACT SEQADV 2F8E GLU X 474 GB 6318192 CLONING ARTIFACT
SEQRES 1 X 474 GLY LEU ILE VAL ASP THR ARG ASP VAL GLU GLU ARG VAL SEQRES 2 X 474 HIS VAL MET ARG LYS THR LYS LEU ALA PRO THR VAL ALA SEQRES 3 X 474 HIS GLY VAL PHE ASN PRO GLU PHE GLY PRO ALA ALA LEU SEQRES 4 X 474 SER ASN LYS ASP PRO ARG LEU ASN GLU GLY VAL VAL LEU SEQRES 5 X 474 ASP GLU VAL ILE PHE SER LYS HIS LYS GLY ASP THR LYS SEQRES 6 X 474 MET SER ALA GLU ASP LYS ALA LEU PHE ARG ARG CYS ALA SEQRES 7 X 474 ALA ASP TYR ALA SER ARG LEU HIS SER VAL LEU GLY THR SEQRES 8 X 474 ALA ASN ALA PRO LEU SER ILE TYR GLU ALA ILE LYS GLY SEQRES 9 X 474 VAL ASP GLY LEU ASP ALA MET GLU PRO ASP THR ALA PRO SEQRES 10 X 474 GLY LEU PRO TRP ALA LEU GLN GLY LYS ARG ARG GLY ALA SEQRES 11 X 474 LEU ILE ASP PHE GLU ASN GLY THR VAL GLY PRO GLU VAL SEQRES 12 X 474 GLU ALA ALA LEU LYS LEU MET GLU LYS ARG GLU TYR LYS SEQRES 13 X 474 PHE ALA CYS GLN THR PHE LEU LYS ASP GLU ILE ARG PRO SEQRES 14 X 474 MET GLU LYS VAL ARG ALA GLY LYS THR ARG ILE VAL ASP SEQRES 15 X 474 VAL LEU PRO VAL GLU HIS ILE LEU TYR THR ARG MET MET SEQRES 16 X 474 ILE GLY ARG PHE CYS ALA GLN MET HIS SER ASN ASN GLY SEQRES 17 X 474 PRO GLN ILE GLY SER ALA VAL GLY CYS ASN PRO ASP VAL SEQRES 18 X 474 ASP TRP GLN ARG PHE GLY THR HIS PHE ALA GLN TYR ARG SEQRES 19 X 474 ASN VAL TRP ASP VAL ASP TYR SER ALA PHE ASP ALA ASN SEQRES 20 X 474 HIS CYS SER ASP ALA MET ASN ILE MET PHE GLU GLU VAL SEQRES 21 X 474 PHE ARG THR GLU PHE GLY PHE HIS PRO ASN ALA GLU TRP SEQRES 22 X 474 ILE LEU LYS THR LEU VAL ASN THR GLU HIS ALA TYR GLU SEQRES 23 X 474 ASN LYS ARG ILE THR VAL GLU GLY GLY MET PRO SER GLY SEQRES 24 X 474 CYS SER ALA THR SER ILE ILE ASN THR ILE LEU ASN ASN SEQRES 25 X 474 ILE TYR VAL LEU TYR ALA LEU ARG ARG HIS TYR GLU GLY SEQRES 26 X 474 VAL GLU LEU ASP THR TYR THR MET ILE SER TYR GLY ASP SEQRES 27 X 474 ASP ILE VAL VAL ALA SER ASP TYR ASP LEU ASP PHE GLU SEQRES 28 X 474 ALA LEU LYS PRO HIS PHE LYS SER LEU GLY GLN THR ILE SEQRES 29 X 474 THR PRO ALA ASP LYS SER ASP LYS GLY PHE VAL LEU GLY SEQRES 30 X 474 HIS SER ILE THR ASP VAL THR PHE LEU LYS ARG HIS PHE SEQRES 31 X 474 HIS MET ASP TYR GLY THR GLY PHE TYR LYS PRO VAL MET SEQRES 32 X 474 ALA SER LYS THR LEU GLU ALA ILE LEU SER PHE ALA ARG SEQRES 33 X 474 ARG GLY THR ILE GLN GLU LYS LEU ILE SER VAL ALA GLY SEQRES 34 X 474 LEU ALA VAL HIS SER GLY PRO ASP GLU TYR ARG ARG LEU SEQRES 35 X 474 PHE GLU PRO PHE GLN GLY LEU PHE GLU ILE PRO SER TYR SEQRES 36 X 474 ARG SER LEU TYR LEU ARG TRP VAL ASN ALA VAL CYS GLY SEQRES 37 X 474 ASP ALA ALA ALA LEU GLU SEQRES 1 A 23 GLY PRO TYR ALA GLY PRO LEU GLU ARG GLN ARG PRO LEU SEQRES 2 A 23 LYS VAL LYS ALA LYS LEU PRO GLN ALA GLU
HET MN A 501 1 HET MG X 502 1 HET U5P A2003 20
HETNAM MN MANGANESE (II) ION HETNAM MG MAGNESIUM ION HETNAM U5P URIDINE-5'-MONOPHOSPHATE
FORMUL 3 MN MN 2+ FORMUL 4 MG MG 2+ FORMUL 5 U5P C9 H13 N2 O9 P
HELIX 1 1 THR X 24 ASN X 31 1 8 HELIX 2 2 VAL X 51 PHE X 57 1 7 HELIX 3 3 SER X 67 GLY X 90 1 24 HELIX 4 4 SER X 97 GLY X 104 1 8 HELIX 5 5 GLY X 140 LYS X 152 1 13 HELIX 6 6 MET X 170 ALA X 175 1 6 HELIX 7 7 PRO X 185 ILE X 196 1 12 HELIX 8 8 ILE X 196 ASN X 206 1 11 HELIX 9 9 ASN X 218 GLN X 232 1 15 HELIX 10 10 CYS X 249 PHE X 261 1 13 HELIX 11 11 ARG X 262 GLY X 266 5 5 HELIX 12 12 PRO X 269 THR X 277 1 9 HELIX 13 13 ALA X 302 ARG X 321 1 20 HELIX 14 14 LEU X 353 SER X 359 1 7 HELIX 15 15 LYS X 369 GLY X 373 5 5 HELIX 16 16 ALA X 404 SER X 413 1 10 HELIX 17 17 THR X 419 VAL X 432 1 14 HELIX 18 18 GLY X 435 PHE X 443 1 9 HELIX 19 19 GLU X 444 GLN X 447 5 4 HELIX 20 20 SER X 454 CYS X 467 1 14 HELIX 21 21 CYS X 467 GLU X 474 1 8
SHEET 1 A 4 LEU X 2 VAL X 13 0 SHEET 2 A 4 ASN X 280 GLU X 293 -1 O GLU X 293 N LEU X 2 SHEET 3 A 4 CYS X 159 LEU X 163 1 N CYS X 159 O GLU X 282 SHEET 4 A 4 ILE X 180 VAL X 183 -1 O VAL X 181 N PHE X 162 SHEET 1 B 2 LEU X 21 PRO X 23 0 SHEET 2 B 2 PHE X 414 ARG X 416 -1 O ALA X 415 N ALA X 22 SHEET 1 C 2 PHE X 34 PRO X 36 0 SHEET 2 C 2 ILE X 167 PRO X 169 -1 O ARG X 168 N GLY X 35 SHEET 1 D 4 THR X 332 TYR X 336 0 SHEET 2 D 4 ASP X 339 SER X 344 -1 O ALA X 343 N THR X 332 SHEET 3 D 4 ASN X 235 TYR X 241 -1 N TRP X 237 O VAL X 342 SHEET 4 D 4 ILE X 364 PRO X 366 -1 O THR X 365 N ASP X 240 SHEET 1 E 3 THR X 384 PHE X 385 0 SHEET 2 E 3 ARG X 388 MET X 392 -1 O ARG X 388 N PHE X 385 SHEET 3 E 3 TYR X 399 VAL X 402 -1 O VAL X 402 N HIS X 389
LINK OH TYR A1003 P U5P A2003 1555 1555 1.62 LINK MN MN A 501 O2P U5P A2003 1555 1555 2.02 LINK MG MG X 502 O1P U5P A2003 1555 1555 2.80 LINK MG MG X 502 OH TYR A1003 1555 1555 3.11
CISPEP 1 LEU X 119 PRO X 120 0 0.12
SITE 1 AC1 2 U5P A2003 ASP X 338 SITE 1 AC2 3 TYR A1003 U5P A2003 SER X 298 SITE 1 AC3 10 MN A 501 TYR A1003 ARG A1009 ARG X 179 SITE 2 AC3 10 ASP X 245 ASN X 307 TYR X 336 GLY X 337 SITE 3 AC3 10 ASP X 338 MG X 502
CRYST1 94.381 94.381 99.726 90.00 90.00 120.00 P 32 2 1 6
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.010595 0.006117 0.000000 0.00000
SCALE2 0.000000 0.012234 0.000000 0.00000
SCALE3 0.000000 0.000000 0.010027 0.00000