10 20 30 40 50 60 70 80 2F49 - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER TRANSFERASE 22-NOV-05 2F49
TITLE CRYSTAL STRUCTURE OF FUS3 IN COMPLEX WITH A STE5 PEPTIDE
COMPND MOL_ID: 1; COMPND 2 MOLECULE: MITOGEN-ACTIVATED PROTEIN KINASE FUS3; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: FUS3; COMPND 5 SYNONYM: MAP KINASE FUS3; COMPND 6 EC: 2.7.1.37; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: STE5 PEPTIDE; COMPND 11 CHAIN: C; COMPND 12 FRAGMENT: FUS3 BINDING REGION OF STE5; COMPND 13 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 GENE: FUS3, DAC2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ROSETTA(DE3)PLYSS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PBH4-FUS3; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 OTHER_DETAILS: THIS PEPTIDE WAS CHEMICALLY SYNTHESIZED BUT SOURCE 14 THIS SEQUENCE NATURALLY OCCURS IN THE STE5 PROTEIN FROM S. SOURCE 15 CEREVISIAE
KEYWDS PROTEIN-PETIDE COMPLEX, TRANSFERASE
EXPDTA X-RAY DIFFRACTION
AUTHOR A.REMENYI
REVDAT 2 24-FEB-09 2F49 1 VERSN REVDAT 1 28-MAR-06 2F49 0
JRNL AUTH R.P.BHATTACHARYYA,A.REMENYI,M.C.GOOD,C.J.BASHOR, JRNL AUTH 2 A.M.FALICK,W.A.LIM JRNL TITL THE STE5 SCAFFOLD ALLOSTERICALLY MODULATES JRNL TITL 2 SIGNALING OUTPUT OF THE YEAST MATING PATHWAY JRNL REF SCIENCE V. 311 822 2006 JRNL REFN ISSN 0036-8075 JRNL PMID 16424299 JRNL DOI 10.1126/SCIENCE.1120941
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES, PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 95.1 REMARK 3 NUMBER OF REFLECTIONS : 69316 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.201 REMARK 3 FREE R VALUE : 0.234 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 6995 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5562 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 23 REMARK 3 SOLVENT ATOMS : 478 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.011 REMARK 3 BOND ANGLES (DEGREES) : 1.50 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 2F49 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-DEC-05. REMARK 100 THE RCSB ID CODE IS RCSB035433.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-MAR-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.1 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.3.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.11590 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 69388 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.3 REMARK 200 DATA REDUNDANCY : 4.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.07000 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 15.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.97 REMARK 200 COMPLETENESS FOR SHELL (%) : 83.2 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.50000 REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 2B9F REMARK 200 REMARK 200 REMARK: NULL
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.33 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.69 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 18% PEG3350, 0.1M MES, 10% MPD, REMARK 280 0.2M KSCN, PH 6.1, VAPOR DIFFUSION, TEMPERATURE 293K
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 47.31100 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 50.83100 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 47.60500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 50.83100 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 47.31100 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 47.60500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4, 5 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL UNIT IS A PROTEIN-PEPTIDE COMPLEX BETWEEN REMARK 300 CHAIN A AND C
REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3010 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17010 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -30.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6750 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 29910 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -68.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4550 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 29220 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -59.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 5 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 PRO A 2 REMARK 465 GLU A 164 REMARK 465 SER A 165 REMARK 465 ALA A 166 REMARK 465 ALA A 167 REMARK 465 ASP A 168 REMARK 465 ASN A 169 REMARK 465 SER A 170 REMARK 465 GLU A 171 REMARK 465 PRO A 172 REMARK 465 THR A 173 REMARK 465 GLY A 174 REMARK 465 GLN A 175 REMARK 465 GLN A 176 REMARK 465 SER A 177 REMARK 465 GLY A 178 REMARK 465 MET A 179 REMARK 465 GLU B 164 REMARK 465 SER B 165 REMARK 465 ALA B 166 REMARK 465 ALA B 167 REMARK 465 ASP B 168 REMARK 465 ASN B 169 REMARK 465 SER B 170 REMARK 465 GLU B 171 REMARK 465 PRO B 172 REMARK 465 THR B 173 REMARK 465 GLY B 174 REMARK 465 GLN B 175 REMARK 465 GLN B 176 REMARK 465 SER B 177 REMARK 465 GLY B 178 REMARK 465 MET B 179 REMARK 465 THR C 287 REMARK 465 ALA C 298 REMARK 465 PRO C 299 REMARK 465 SER C 300 REMARK 465 LEU C 301 REMARK 465 ASN C 302 REMARK 465 PRO C 303 REMARK 465 ASN C 304 REMARK 465 LEU C 305 REMARK 465 ASN C 315 REMARK 465 GLN C 316
REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS(M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 108 CG SD CE REMARK 470 ARG A 249 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 252 CG CD OE1 OE2 REMARK 470 ARG A 255 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 258 CG CD OE1 OE2 REMARK 470 LYS A 273 CG CD CE NZ REMARK 470 ARG A 277 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 296 CG CD CE NZ REMARK 470 GLU A 320 CG CD OE1 OE2 REMARK 470 GLU A 322 CG CD OE1 OE2 REMARK 470 LYS A 335 CG CD CE NZ REMARK 470 LYS B 3 CG CD CE NZ REMARK 470 LYS B 67 CG CD CE NZ REMARK 470 GLU B 84 CG CD OE1 OE2 REMARK 470 ARG B 249 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 252 CG CD OE1 OE2 REMARK 470 ARG B 255 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 273 CG CD CE NZ REMARK 470 GLU B 330 CG CD OE1 OE2 REMARK 470 LYS B 335 CG CD CE NZ REMARK 470 GLN C 297 CG CD OE1 NE2 REMARK 470 LYS C 312 CG CD CE NZ REMARK 470 GLU C 313 CG CD OE1 OE2
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 189 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 ARG B 229 NE - CZ - NH1 ANGL. DEV. = -4.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 16 -72.20 -102.26 REMARK 500 THR A 98 -155.57 -155.19 REMARK 500 ARG A 136 -0.80 72.91 REMARK 500 ASP A 137 41.65 -148.24 REMARK 500 ASP A 155 64.42 64.87 REMARK 500 HIS A 243 -48.63 -131.23 REMARK 500 PRO A 319 129.73 -39.40 REMARK 500 PHE A 329 55.46 -114.97 REMARK 500 ASP B 137 39.07 -148.35 REMARK 500 ASP B 155 64.44 68.01 REMARK 500 HIS B 243 -21.71 -148.36 REMARK 500 PHE B 329 59.31 -118.90 REMARK 500 LYS C 312 -73.30 -49.25 REMARK 500 REMARK 500 REMARK: NULL
REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 791 DISTANCE = 6.48 ANGSTROMS
REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 601 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TYR A 24 O REMARK 620 2 LYS A 49 NZ 102.6 REMARK 620 3 GLU A 45 N 111.4 126.9 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 602 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TYR B 24 O REMARK 620 2 GLU B 45 N 112.7 REMARK 620 N 1
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 601 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 602 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SCN A 501 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SCN B 503 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SCN B 504 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SCN A 505 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SCN A 506 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SCN B 507
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2B9F RELATED DB: PDB REMARK 900 THE SAME PROTEIN WITHOUT PEPTIDE BUT COMPLEXED WITH MGADP REMARK 900 RELATED ID: 2B9H RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEXED WITH A PEPTIDE FROM STE7 REMARK 900 RELATED ID: 2B9I RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEXED WITH A PEPTIDE FROM MSG5 REMARK 900 RELATED ID: 2B9J RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEXED WITH A PEPTIDE FROM FAR1
DBREF 2F49 A 1 353 UNP P16892 FUS3_YEAST 1 353 DBREF 2F49 B 1 353 UNP P16892 FUS3_YEAST 1 353 DBREF 2F49 C 287 316 PDB 2F49 2F49 287 316
SEQADV 2F49 VAL A 180 UNP P16892 THR 180 ENGINEERED SEQADV 2F49 PHE A 182 UNP P16892 TYR 182 ENGINEERED SEQADV 2F49 VAL B 180 UNP P16892 THR 180 ENGINEERED SEQADV 2F49 PHE B 182 UNP P16892 TYR 182 ENGINEERED
SEQRES 1 A 353 MET PRO LYS ARG ILE VAL TYR ASN ILE SER SER ASP PHE SEQRES 2 A 353 GLN LEU LYS SER LEU LEU GLY GLU GLY ALA TYR GLY VAL SEQRES 3 A 353 VAL CYS SER ALA THR HIS LYS PRO THR GLY GLU ILE VAL SEQRES 4 A 353 ALA ILE LYS LYS ILE GLU PRO PHE ASP LYS PRO LEU PHE SEQRES 5 A 353 ALA LEU ARG THR LEU ARG GLU ILE LYS ILE LEU LYS HIS SEQRES 6 A 353 PHE LYS HIS GLU ASN ILE ILE THR ILE PHE ASN ILE GLN SEQRES 7 A 353 ARG PRO ASP SER PHE GLU ASN PHE ASN GLU VAL TYR ILE SEQRES 8 A 353 ILE GLN GLU LEU MET GLN THR ASP LEU HIS ARG VAL ILE SEQRES 9 A 353 SER THR GLN MET LEU SER ASP ASP HIS ILE GLN TYR PHE SEQRES 10 A 353 ILE TYR GLN THR LEU ARG ALA VAL LYS VAL LEU HIS GLY SEQRES 11 A 353 SER ASN VAL ILE HIS ARG ASP LEU LYS PRO SER ASN LEU SEQRES 12 A 353 LEU ILE ASN SER ASN CYS ASP LEU LYS VAL CYS ASP PHE SEQRES 13 A 353 GLY LEU ALA ARG ILE ILE ASP GLU SER ALA ALA ASP ASN SEQRES 14 A 353 SER GLU PRO THR GLY GLN GLN SER GLY MET VAL GLU PHE SEQRES 15 A 353 VAL ALA THR ARG TRP TYR ARG ALA PRO GLU VAL MET LEU SEQRES 16 A 353 THR SER ALA LYS TYR SER ARG ALA MET ASP VAL TRP SER SEQRES 17 A 353 CYS GLY CYS ILE LEU ALA GLU LEU PHE LEU ARG ARG PRO SEQRES 18 A 353 ILE PHE PRO GLY ARG ASP TYR ARG HIS GLN LEU LEU LEU SEQRES 19 A 353 ILE PHE GLY ILE ILE GLY THR PRO HIS SER ASP ASN ASP SEQRES 20 A 353 LEU ARG CYS ILE GLU SER PRO ARG ALA ARG GLU TYR ILE SEQRES 21 A 353 LYS SER LEU PRO MET TYR PRO ALA ALA PRO LEU GLU LYS SEQRES 22 A 353 MET PHE PRO ARG VAL ASN PRO LYS GLY ILE ASP LEU LEU SEQRES 23 A 353 GLN ARG MET LEU VAL PHE ASP PRO ALA LYS ARG ILE THR SEQRES 24 A 353 ALA LYS GLU ALA LEU GLU HIS PRO TYR LEU GLN THR TYR SEQRES 25 A 353 HIS ASP PRO ASN ASP GLU PRO GLU GLY GLU PRO ILE PRO SEQRES 26 A 353 PRO SER PHE PHE GLU PHE ASP HIS TYR LYS GLU ALA LEU SEQRES 27 A 353 THR THR LYS ASP LEU LYS LYS LEU ILE TRP ASN GLU ILE SEQRES 28 A 353 PHE SER SEQRES 1 B 353 MET PRO LYS ARG ILE VAL TYR ASN ILE SER SER ASP PHE SEQRES 2 B 353 GLN LEU LYS SER LEU LEU GLY GLU GLY ALA TYR GLY VAL SEQRES 3 B 353 VAL CYS SER ALA THR HIS LYS PRO THR GLY GLU ILE VAL SEQRES 4 B 353 ALA ILE LYS LYS ILE GLU PRO PHE ASP LYS PRO LEU PHE SEQRES 5 B 353 ALA LEU ARG THR LEU ARG GLU ILE LYS ILE LEU LYS HIS SEQRES 6 B 353 PHE LYS HIS GLU ASN ILE ILE THR ILE PHE ASN ILE GLN SEQRES 7 B 353 ARG PRO ASP SER PHE GLU ASN PHE ASN GLU VAL TYR ILE SEQRES 8 B 353 ILE GLN GLU LEU MET GLN THR ASP LEU HIS ARG VAL ILE SEQRES 9 B 353 SER THR GLN MET LEU SER ASP ASP HIS ILE GLN TYR PHE SEQRES 10 B 353 ILE TYR GLN THR LEU ARG ALA VAL LYS VAL LEU HIS GLY SEQRES 11 B 353 SER ASN VAL ILE HIS ARG ASP LEU LYS PRO SER ASN LEU SEQRES 12 B 353 LEU ILE ASN SER ASN CYS ASP LEU LYS VAL CYS ASP PHE SEQRES 13 B 353 GLY LEU ALA ARG ILE ILE ASP GLU SER ALA ALA ASP ASN SEQRES 14 B 353 SER GLU PRO THR GLY GLN GLN SER GLY MET VAL GLU PHE SEQRES 15 B 353 VAL ALA THR ARG TRP TYR ARG ALA PRO GLU VAL MET LEU SEQRES 16 B 353 THR SER ALA LYS TYR SER ARG ALA MET ASP VAL TRP SER SEQRES 17 B 353 CYS GLY CYS ILE LEU ALA GLU LEU PHE LEU ARG ARG PRO SEQRES 18 B 353 ILE PHE PRO GLY ARG ASP TYR ARG HIS GLN LEU LEU LEU SEQRES 19 B 353 ILE PHE GLY ILE ILE GLY THR PRO HIS SER ASP ASN ASP SEQRES 20 B 353 LEU ARG CYS ILE GLU SER PRO ARG ALA ARG GLU TYR ILE SEQRES 21 B 353 LYS SER LEU PRO MET TYR PRO ALA ALA PRO LEU GLU LYS SEQRES 22 B 353 MET PHE PRO ARG VAL ASN PRO LYS GLY ILE ASP LEU LEU SEQRES 23 B 353 GLN ARG MET LEU VAL PHE ASP PRO ALA LYS ARG ILE THR SEQRES 24 B 353 ALA LYS GLU ALA LEU GLU HIS PRO TYR LEU GLN THR TYR SEQRES 25 B 353 HIS ASP PRO ASN ASP GLU PRO GLU GLY GLU PRO ILE PRO SEQRES 26 B 353 PRO SER PHE PHE GLU PHE ASP HIS TYR LYS GLU ALA LEU SEQRES 27 B 353 THR THR LYS ASP LEU LYS LYS LEU ILE TRP ASN GLU ILE SEQRES 28 B 353 PHE SER SEQRES 1 C 30 THR PRO VAL GLU ARG GLN THR ILE TYR SER GLN ALA PRO SEQRES 2 C 30 SER LEU ASN PRO ASN LEU ILE LEU ALA ALA PRO PRO LYS SEQRES 3 C 30 GLU ARG ASN GLN
HET MG A 601 1 HET MG B 602 1 HET SCN A 501 3 HET SCN B 502 3 HET SCN B 503 3 HET SCN B 504 3 HET SCN A 505 3 HET SCN A 506 3 HET SCN B 507 3
HETNAM MG MAGNESIUM ION HETNAM SCN THIOCYANATE ION
FORMUL 4 MG 2(MG 2+) FORMUL 6 SCN 7(C N S 1-) FORMUL 13 HOH *478(H2 O)
HELIX 1 1 LYS A 49 PHE A 66 1 18 HELIX 2 2 LEU A 100 GLN A 107 1 8 HELIX 3 3 SER A 110 SER A 131 1 22 HELIX 4 4 LYS A 139 SER A 141 5 3 HELIX 5 5 ALA A 190 THR A 196 1 7 HELIX 6 6 ARG A 202 ARG A 219 1 18 HELIX 7 7 ASP A 227 GLY A 240 1 14 HELIX 8 8 SER A 253 SER A 262 1 10 HELIX 9 9 PRO A 270 PHE A 275 1 6 HELIX 10 10 ASN A 279 LEU A 290 1 12 HELIX 11 11 ASP A 293 ARG A 297 5 5 HELIX 12 12 THR A 299 GLU A 305 1 7 HELIX 13 13 HIS A 306 GLN A 310 5 5 HELIX 14 14 PRO A 325 TYR A 334 5 10 HELIX 15 15 THR A 340 PHE A 352 1 13 HELIX 16 16 LYS B 49 PHE B 66 1 18 HELIX 17 17 LEU B 100 GLN B 107 1 8 HELIX 18 18 SER B 110 SER B 131 1 22 HELIX 19 19 LYS B 139 SER B 141 5 3 HELIX 20 20 ALA B 190 THR B 196 1 7 HELIX 21 21 SER B 201 ARG B 219 1 19 HELIX 22 22 ASP B 227 GLY B 240 1 14 HELIX 23 23 ASN B 246 ILE B 251 5 6 HELIX 24 24 SER B 253 SER B 262 1 10 HELIX 25 25 PRO B 270 PHE B 275 1 6 HELIX 26 26 ASN B 279 LEU B 290 1 12 HELIX 27 27 THR B 299 GLU B 305 1 7 HELIX 28 28 HIS B 306 GLN B 310 5 5 HELIX 29 29 PRO B 325 TYR B 334 5 10 HELIX 30 30 THR B 340 SER B 353 1 14
SHEET 1 A 2 ARG A 4 SER A 10 0 SHEET 2 A 2 VAL C 289 TYR C 295 -1 O ILE C 294 N ILE A 5 SHEET 1 B 5 PHE A 13 GLU A 21 0 SHEET 2 B 5 GLY A 25 HIS A 32 -1 O VAL A 27 N LEU A 19 SHEET 3 B 5 ILE A 38 ILE A 44 -1 O LYS A 43 N VAL A 26 SHEET 4 B 5 VAL A 89 GLN A 93 -1 O VAL A 89 N ILE A 44 SHEET 5 B 5 ILE A 74 ILE A 77 -1 N ASN A 76 O ILE A 92 SHEET 1 C 3 THR A 98 ASP A 99 0 SHEET 2 C 3 LEU A 143 ILE A 145 -1 O ILE A 145 N THR A 98 SHEET 3 C 3 LEU A 151 VAL A 153 -1 O LYS A 152 N LEU A 144 SHEET 1 D 2 VAL A 133 ILE A 134 0 SHEET 2 D 2 ARG A 160 ILE A 161 -1 O ARG A 160 N ILE A 134 SHEET 1 E 2 PHE A 182 VAL A 183 0 SHEET 2 E 2 LEU B 338 THR B 339 1 O LEU B 338 N VAL A 183 SHEET 1 F 2 LEU A 338 THR A 339 0 SHEET 2 F 2 PHE B 182 VAL B 183 1 O VAL B 183 N LEU A 338 SHEET 1 G 5 PHE B 13 GLU B 21 0 SHEET 2 G 5 GLY B 25 HIS B 32 -1 O VAL B 27 N LEU B 19 SHEET 3 G 5 ILE B 38 ILE B 44 -1 O ILE B 41 N CYS B 28 SHEET 4 G 5 VAL B 89 GLU B 94 -1 O VAL B 89 N ILE B 44 SHEET 5 G 5 ILE B 74 ILE B 77 -1 N ASN B 76 O ILE B 92 SHEET 1 H 3 THR B 98 ASP B 99 0 SHEET 2 H 3 LEU B 143 ILE B 145 -1 O ILE B 145 N THR B 98 SHEET 3 H 3 LEU B 151 VAL B 153 -1 O LYS B 152 N LEU B 144 SHEET 1 I 2 VAL B 133 ILE B 134 0 SHEET 2 I 2 ARG B 160 ILE B 161 -1 O ARG B 160 N ILE B 134
LINK O TYR A 24 MG MG A 601 1555 1555 1.86 LINK O TYR B 24 MG MG B 602 1555 1555 2.22 LINK MG MG A 601 NZ LYS A 49 1555 1555 2.72 LINK MG MG A 601 N GLU A 45 1555 1555 2.94 LINK MG MG B 602 N GLU B 45 1555 1555 2.83
SITE 1 AC1 4 TYR A 24 GLY A 25 GLU A 45 LYS A 49 SITE 1 AC2 4 TYR B 24 GLY B 25 GLU B 45 LYS B 49 SITE 1 AC3 2 LYS A 42 ILE A 44 SITE 1 AC4 8 LYS A 49 PRO A 50 LEU A 51 PHE A 52 SITE 2 AC4 8 LYS B 49 PRO B 50 LEU B 51 PHE B 52 SITE 1 AC5 4 ALA A 337 ARG B 189 VAL B 193 LYS B 199 SITE 1 AC6 6 ARG A 189 VAL A 193 MET A 194 LYS A 199 SITE 2 AC6 6 GLU B 336 ALA B 337 SITE 1 AC7 4 THR A 185 ARG A 186 TRP A 187 THR B 339 SITE 1 AC8 8 LYS A 341 THR B 185 ARG B 186 TRP B 187 SITE 2 AC8 8 GLY B 225 HOH B 624 HOH B 666 HOH B 702
CRYST1 94.622 95.210 101.662 90.00 90.00 90.00 P 21 21 21 8
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.010568 0.000000 0.000000 0.00000
SCALE2 0.000000 0.010503 0.000000 0.00000
SCALE3 0.000000 0.000000 0.009837 0.00000