10 20 30 40 50 60 70 80 2F3W - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER HYDROLASE 22-NOV-05 2F3W
TITLE SOLUTION STRUCTURE OF 1-110 FRAGMENT OF STAPHYLOCOCCAL TITLE 2 NUCLEASE IN 2M TMAO
COMPND MOL_ID: 1; COMPND 2 MOLECULE: THERMONUCLEASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 1-110; COMPND 5 SYNONYM: STAPHYLOCOCCAL NUCLEASE, TNASE, MICROCOCCAL COMPND 6 NUCLEASE; COMPND 7 EC: 3.1.31.1; COMPND 8 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS; SOURCE 3 ORGANISM_TAXID: 1280; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET3D
KEYWDS OB-FOLD, HYDROLASE
EXPDTA SOLUTION NMR
NUMMDL 12
AUTHOR D.LIU,T.XIE,Y.FENG,L.SHAN,K.YE,J.WANG
REVDAT 3 24-FEB-09 2F3W 1 VERSN REVDAT 2 17-JUL-07 2F3W 1 JRNL REVDAT 1 05-DEC-06 2F3W 0
JRNL AUTH T.XIE,D.LIU,Y.FENG,L.SHAN,J.WANG JRNL TITL FOLDING STABILITY AND COOPERATIVITY OF THE THREE JRNL TITL 2 FORMS OF 1-110 RESIDUES FRAGMENT OF STAPHYLOCOCCAL JRNL TITL 3 NUCLEASE JRNL REF BIOPHYS.J. V. 92 2090 2007 JRNL REFN ISSN 0006-3495 JRNL PMID 17172296 JRNL DOI 10.1529/BIOPHYSJ.106.092155
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 KUNSTLEVE,JIANG,KUSZEWSKI,NILGES, PANNU,READ, REMARK 3 RICE,SIMONSON,WARREN REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 2F3W COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 03-DEC-05. REMARK 100 THE RCSB ID CODE IS RCSB035420.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.0 REMARK 210 IONIC STRENGTH : 2M TMAO, 0.2M HCL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1MM SNASE110 FRAGMENT, 2M REMARK 210 TMAO, 0.2M HCL, DSS, NAN3; 90% REMARK 210 H2O, 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : DMX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR 3.5, FELIX 980, CNS REMARK 210 1.1 REMARK 210 METHOD USED : SIMULATED ANNEALING TORSION REMARK 210 ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 50 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 12 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LYS A 16 94.22 -167.91 REMARK 500 1 ASP A 19 -65.68 68.22 REMARK 500 1 ASP A 21 -77.73 -121.44 REMARK 500 1 ARG A 35 122.50 67.51 REMARK 500 1 LEU A 37 101.00 -54.66 REMARK 500 1 LEU A 38 -169.47 -62.82 REMARK 500 1 THR A 44 -45.13 -161.96 REMARK 500 1 LYS A 45 96.17 -58.36 REMARK 500 1 VAL A 51 -63.64 -128.28 REMARK 500 1 LYS A 53 -53.93 -120.26 REMARK 500 1 GLU A 57 -70.36 -55.47 REMARK 500 1 GLU A 75 72.52 -101.40 REMARK 500 1 PHE A 76 118.00 -177.38 REMARK 500 1 ASP A 83 -36.05 174.80 REMARK 500 1 ARG A 87 26.14 89.60 REMARK 500 1 ALA A 102 -84.31 -62.73 REMARK 500 1 LEU A 108 108.11 50.91 REMARK 500 1 ALA A 109 -70.04 88.57 REMARK 500 2 ASP A 19 -8.85 82.82 REMARK 500 2 ASP A 21 -18.46 166.66 REMARK 500 2 PRO A 31 102.26 -52.55 REMARK 500 2 ARG A 35 74.54 34.78 REMARK 500 2 LYS A 45 -50.83 -145.30 REMARK 500 2 LYS A 48 -91.76 -110.85 REMARK 500 2 LYS A 53 13.53 -143.84 REMARK 500 2 PRO A 56 2.51 -56.47 REMARK 500 2 LYS A 70 -54.92 -129.92 REMARK 500 2 PHE A 76 168.22 48.74 REMARK 500 2 LYS A 78 -8.60 79.55 REMARK 500 2 ASP A 83 -61.47 76.59 REMARK 500 2 TYR A 85 -34.42 -179.71 REMARK 500 2 ARG A 87 26.51 171.96 REMARK 500 2 LEU A 108 22.42 99.24 REMARK 500 2 ALA A 109 -165.70 -177.73 REMARK 500 3 LYS A 16 91.91 -163.39 REMARK 500 3 ASP A 19 -19.80 82.34 REMARK 500 3 ASP A 21 -40.88 -170.50 REMARK 500 3 PRO A 31 97.36 -66.87 REMARK 500 3 ASP A 40 89.78 -150.85 REMARK 500 3 GLU A 43 20.72 -165.54 REMARK 500 3 LYS A 48 -101.46 -97.21 REMARK 500 3 VAL A 51 -51.27 -127.03 REMARK 500 3 LYS A 53 -74.53 -24.69 REMARK 500 3 TYR A 54 25.00 -156.03 REMARK 500 3 ALA A 58 -32.24 -39.42 REMARK 500 3 GLU A 67 -79.95 -95.69 REMARK 500 3 LYS A 70 -69.64 -90.62 REMARK 500 3 LYS A 71 133.99 176.30 REMARK 500 3 PHE A 76 117.89 175.63 REMARK 500 3 ASP A 77 74.39 -114.31 REMARK 500 3 LYS A 78 -54.98 -133.09 REMARK 500 3 LYS A 84 -78.65 -71.02 REMARK 500 3 TYR A 93 78.22 -114.61 REMARK 500 3 LEU A 108 -115.08 -156.52 REMARK 500 3 ALA A 109 16.77 -178.03 REMARK 500 4 LYS A 16 86.72 -177.15 REMARK 500 4 ASP A 19 -137.44 172.43 REMARK 500 4 ASP A 21 -84.67 -72.59 REMARK 500 4 ARG A 35 157.43 62.47 REMARK 500 4 THR A 44 -54.43 -179.98 REMARK 500 4 HIS A 46 -61.68 -159.88 REMARK 500 4 LYS A 53 -8.39 173.11 REMARK 500 4 GLU A 57 -64.75 -94.92 REMARK 500 4 GLU A 67 -76.51 -95.29 REMARK 500 4 LYS A 70 -71.00 -73.43 REMARK 500 4 LYS A 71 -32.12 176.47 REMARK 500 4 ILE A 72 146.76 83.92 REMARK 500 4 GLU A 75 -76.22 -86.79 REMARK 500 4 LYS A 78 -55.12 -140.44 REMARK 500 4 ARG A 87 -24.42 -174.43 REMARK 500 4 ALA A 102 -82.88 -64.91 REMARK 500 5 LYS A 16 135.74 -178.84 REMARK 500 5 ASP A 19 -110.32 169.25 REMARK 500 5 ASP A 21 -90.04 -80.27 REMARK 500 5 LYS A 28 29.05 47.44 REMARK 500 5 ARG A 35 102.75 60.49 REMARK 500 5 LYS A 48 29.95 -157.18 REMARK 500 5 TYR A 54 -26.32 -169.61 REMARK 500 5 GLU A 67 -70.99 -95.47 REMARK 500 5 LYS A 70 -60.24 -99.84 REMARK 500 5 ASP A 83 -57.50 81.09 REMARK 500 5 TYR A 85 11.37 -153.50 REMARK 500 5 ARG A 87 -24.15 167.99 REMARK 500 5 LEU A 108 107.33 64.27 REMARK 500 5 ALA A 109 -117.90 82.41 REMARK 500 6 ASP A 19 -54.89 76.05 REMARK 500 6 ASP A 21 -79.98 -132.79 REMARK 500 6 ARG A 35 164.11 59.58 REMARK 500 6 LEU A 37 102.48 -57.33 REMARK 500 6 THR A 44 -77.34 -96.46 REMARK 500 6 HIS A 46 -61.29 -176.56 REMARK 500 6 GLU A 57 -68.06 -97.23 REMARK 500 6 GLU A 67 -72.71 -95.26 REMARK 500 6 LYS A 70 29.06 -162.65 REMARK 500 6 LYS A 71 61.60 -109.59 REMARK 500 6 PHE A 76 163.78 60.68 REMARK 500 6 LYS A 78 -42.98 -177.37 REMARK 500 6 LYS A 84 -161.64 -58.38 REMARK 500 6 ALA A 102 -84.87 -58.43 REMARK 500 6 LEU A 108 -25.49 140.90 REMARK 500 6 ALA A 109 -89.56 -168.57 REMARK 500 7 ASP A 19 -108.97 169.10 REMARK 500 7 ASP A 21 -82.19 -95.52 REMARK 500 7 PRO A 31 93.78 -67.57 REMARK 500 7 PHE A 34 61.64 -105.14 REMARK 500 7 ARG A 35 93.80 -66.65 REMARK 500 7 GLU A 43 -44.63 -164.03 REMARK 500 7 LYS A 45 -65.67 -92.96 REMARK 500 7 HIS A 46 71.78 60.48 REMARK 500 7 LYS A 48 -84.22 -111.00 REMARK 500 7 TYR A 54 -25.56 -176.72 REMARK 500 7 LYS A 70 70.21 -165.35 REMARK 500 7 PHE A 76 133.73 -178.85 REMARK 500 7 ASP A 83 -49.77 84.94 REMARK 500 7 TYR A 85 11.40 -149.32 REMARK 500 7 ARG A 87 -24.42 169.19 REMARK 500 7 MET A 98 94.57 -58.31 REMARK 500 7 LEU A 108 86.02 69.55 REMARK 500 7 ALA A 109 -41.31 -166.63 REMARK 500 8 ASP A 19 -61.62 69.70 REMARK 500 8 ASP A 21 -76.09 -127.42 REMARK 500 8 ARG A 35 89.91 62.07 REMARK 500 8 ASP A 40 87.74 -154.90 REMARK 500 8 GLU A 43 -65.67 -178.33 REMARK 500 8 LYS A 45 96.86 44.22 REMARK 500 8 LYS A 48 -73.51 -57.20 REMARK 500 8 LYS A 53 -2.23 161.34 REMARK 500 8 GLU A 57 -63.80 -95.98 REMARK 500 8 ASP A 83 47.06 -98.89 REMARK 500 8 TYR A 85 11.17 -158.30 REMARK 500 8 ARG A 87 -24.60 176.88 REMARK 500 8 TYR A 93 78.01 -116.64 REMARK 500 8 ALA A 102 -84.46 -61.71 REMARK 500 8 LEU A 108 74.00 78.38 REMARK 500 8 ALA A 109 -71.36 131.15 REMARK 500 9 LYS A 16 126.02 178.57 REMARK 500 9 ASP A 19 -113.66 165.11 REMARK 500 9 ASP A 21 -82.46 -72.64 REMARK 500 9 PRO A 31 102.24 -54.88 REMARK 500 9 ARG A 35 87.05 51.73 REMARK 500 9 GLU A 43 -28.20 165.89 REMARK 500 9 THR A 44 -64.45 -154.09 REMARK 500 9 LYS A 45 -55.60 170.84 REMARK 500 9 HIS A 46 83.34 178.32 REMARK 500 9 LYS A 48 -53.82 175.83 REMARK 500 9 VAL A 51 1.41 -66.56 REMARK 500 9 LYS A 53 -45.80 -167.06 REMARK 500 9 TYR A 54 -22.37 169.81 REMARK 500 9 ALA A 58 -35.83 -39.98 REMARK 500 9 PHE A 76 136.75 -171.21 REMARK 500 9 LYS A 78 -30.39 175.31 REMARK 500 9 TYR A 85 -37.01 -178.13 REMARK 500 9 ALA A 102 -74.52 -76.48 REMARK 500 9 LEU A 108 76.32 64.46 REMARK 500 9 ALA A 109 103.76 176.91 REMARK 500 10 ASP A 19 -64.58 69.08 REMARK 500 10 ASP A 21 -79.64 -128.75 REMARK 500 10 PRO A 31 90.41 -69.82 REMARK 500 10 ARG A 35 144.14 64.24 REMARK 500 10 THR A 44 -54.84 -164.30 REMARK 500 10 LYS A 45 -48.70 -162.68 REMARK 500 10 LYS A 53 44.60 139.96 REMARK 500 10 LYS A 70 -83.15 60.17 REMARK 500 10 LYS A 71 -30.02 166.95 REMARK 500 10 ILE A 72 160.48 79.23 REMARK 500 10 GLU A 75 -86.42 -124.84 REMARK 500 10 PHE A 76 117.89 59.75 REMARK 500 10 LYS A 78 -44.45 -166.73 REMARK 500 10 ASP A 83 -72.67 104.02 REMARK 500 10 ARG A 87 -24.20 165.35 REMARK 500 10 LYS A 97 111.69 -161.70 REMARK 500 10 ALA A 102 -84.64 -67.18 REMARK 500 10 VAL A 104 -16.50 -48.82 REMARK 500 10 LEU A 108 87.91 55.87 REMARK 500 10 ALA A 109 -6.02 -170.61 REMARK 500 11 ASP A 19 -152.71 166.93 REMARK 500 11 ASP A 21 -71.17 -67.15 REMARK 500 11 ARG A 35 145.65 62.86 REMARK 500 11 GLU A 43 28.51 -159.30 REMARK 500 11 TYR A 54 -25.54 172.11 REMARK 500 11 GLU A 67 -69.61 -95.60 REMARK 500 11 LYS A 71 149.77 172.61 REMARK 500 11 PHE A 76 117.46 46.94 REMARK 500 11 TYR A 85 -37.95 -177.19 REMARK 500 11 ALA A 102 -84.53 -61.53 REMARK 500 11 ALA A 109 86.78 176.32 REMARK 500 12 ASP A 19 -110.21 166.45 REMARK 500 12 ASP A 21 -80.75 -70.17 REMARK 500 12 LEU A 38 -178.62 -68.44 REMARK 500 12 THR A 44 78.94 -161.00 REMARK 500 12 LYS A 48 -55.08 -145.01 REMARK 500 12 VAL A 51 -67.37 -130.43 REMARK 500 12 GLU A 52 -78.11 -121.29 REMARK 500 12 LYS A 53 2.12 -161.87 REMARK 500 12 GLU A 67 -72.80 -85.70 REMARK 500 12 PHE A 76 117.80 -168.66 REMARK 500 12 LYS A 78 -38.59 -169.49 REMARK 500 12 TYR A 85 -38.54 -176.28 REMARK 500 12 ARG A 87 -24.50 -160.73 REMARK 500 12 TYR A 93 71.73 -113.69 REMARK 500 12 GLU A 101 -63.12 -91.31 REMARK 500 12 VAL A 104 -62.26 -90.12 REMARK 500 12 LEU A 108 34.81 -153.22 REMARK 500 12 ALA A 109 42.79 167.70 REMARK 500 REMARK 500 REMARK: NULL
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2F3V RELATED DB: PDB REMARK 900 STAPHYLOCOCCAL NUCLEASE WITH V66W MUTATION REMARK 900 RELATED ID: 1RKN RELATED DB: PDB REMARK 900 STAPHYLOCOCCAL NUCLEASE WITH G88W MUTATION
DBREF 2F3W A 1 110 UNP P00644 NUC_STAAU 83 192
SEQRES 1 A 110 ALA THR SER THR LYS LYS LEU HIS LYS GLU PRO ALA THR SEQRES 2 A 110 LEU ILE LYS ALA ILE ASP GLY ASP THR VAL LYS LEU MET SEQRES 3 A 110 TYR LYS GLY GLN PRO MET THR PHE ARG LEU LEU LEU VAL SEQRES 4 A 110 ASP THR PRO GLU THR LYS HIS PRO LYS LYS GLY VAL GLU SEQRES 5 A 110 LYS TYR GLY PRO GLU ALA SER ALA PHE THR LYS LYS MET SEQRES 6 A 110 VAL GLU ASN ALA LYS LYS ILE GLU VAL GLU PHE ASP LYS SEQRES 7 A 110 GLY GLN ARG THR ASP LYS TYR GLY ARG GLY LEU ALA TYR SEQRES 8 A 110 ILE TYR ALA ASP GLY LYS MET VAL ASN GLU ALA LEU VAL SEQRES 9 A 110 ARG GLN GLY LEU ALA LYS
HELIX 1 1 GLY A 55 GLU A 67 1 13 HELIX 2 2 LEU A 103 GLY A 107 5 5
SHEET 1 A 2 LYS A 9 PRO A 11 0 SHEET 2 A 2 GLU A 73 GLU A 75 -1 O VAL A 74 N GLU A 10 SHEET 1 B 2 LYS A 24 TYR A 27 0 SHEET 2 B 2 GLN A 30 THR A 33 -1 O MET A 32 N LEU A 25 SHEET 1 C 2 TYR A 93 ALA A 94 0 SHEET 2 C 2 LYS A 97 MET A 98 -1 O LYS A 97 N ALA A 94
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000