10 20 30 40 50 60 70 80 2F09 - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 12-NOV-05 2F09
TITLE SOLUTION STRUCTURE OF THE GENE PRODUCT OF E. COLI GENE YDHA
COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYPOTHETICAL PROTEIN YDHA; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI K12; SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K-12; SOURCE 5 GENE: YDHA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET15B
KEYWDS 8 STRAND BETA-BARREL, STRUCTURAL GENOMICS, ONTARIO CENTRE KEYWDS 2 FOR STRUCTURAL PROTEOMICS, OCSP, UNKNOWN FUNCTION
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR G.S.SHAW,M.J.REVINGTON,ONTARIO CENTRE FOR STRUCTURAL AUTHOR 2 PROTEOMICS (OCSP)
REVDAT 2 24-FEB-09 2F09 1 VERSN REVDAT 1 13-DEC-05 2F09 0
JRNL AUTH G.S.SHAW,M.J.REVINGTON JRNL TITL THE SOLUTION STRUCTURE OF THE ESCHERICHIA COLI JRNL TITL 2 GENE PRODUCT YDHA. JRNL REF TO BE PUBLISHED JRNL REFN
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 2.032.3, CNS 1.1 REMARK 3 AUTHORS : GUNTERT, P., MUMENTHALER, C. AND WUTHRICH, K. REMARK 3 (CYANA), A.T.BRUNGER, P.D.ADAMS, G.M.CLORE, REMARK 3 W.L.DELANO, P.GROS,R.W.GROSSE-KUNSTLEVE, J.- REMARK 3 S.JIANG, J.KUSZEWSKI, M.NILGES,N.S.PANNU, REMARK 3 R.J.READ, L.M.RICE, T.SIMONSON, G.L.WARREN (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 2F09 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-NOV-05. REMARK 100 THE RCSB ID CODE IS RCSB035291.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298.0 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 410 MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.5 MM YDHA U-15N,U-13C, 10MM REMARK 210 SODIUM PHOSPHATE, 400 MM NACL, REMARK 210 10 MM DITHIOTHREITOL, 0.01% REMARK 210 SODIUM AZIDE, 1MM BENZAMIDINE, REMARK 210 PH6.5, 90% H2O, 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY, 3D_ REMARK 210 15N-SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : VNMR 6.1B, NMRPIPE 2.3, REMARK 210 NMRVIEW 5.2.2 REMARK 210 METHOD USED : SIMULATED ANNEALING, TORSION REMARK 210 ANGLE DYNAMICS, MOLECULAR REMARK 210 DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THE STRUCTURE WAS DETERMINED USING TRIPLE-RESONANCE NMR REMARK 210 SPECTROSCOPY
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 MET A -19 REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 465 LEU A -6 REMARK 465 VAL A -5 REMARK 465 PRO A -4 REMARK 465 ARG A -3 REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LEU A 6 -154.78 -78.32 REMARK 500 1 TYR A 8 7.82 50.82 REMARK 500 1 GLN A 9 82.59 -156.45 REMARK 500 1 LEU A 15 69.24 -101.92 REMARK 500 1 ASP A 31 -58.19 -173.90 REMARK 500 1 ASN A 32 15.20 -145.74 REMARK 500 1 ALA A 43 -44.06 -139.64 REMARK 500 1 ASP A 68 -31.99 167.41 REMARK 500 1 ASN A 74 87.62 -162.03 REMARK 500 1 ASN A 79 146.24 171.39 REMARK 500 1 PRO A 80 -149.90 -78.76 REMARK 500 2 LEU A 6 -164.48 -76.51 REMARK 500 2 LYS A 18 75.47 -108.48 REMARK 500 2 GLN A 24 56.74 -40.30 REMARK 500 2 ASP A 31 -50.86 -173.45 REMARK 500 2 ALA A 43 -77.93 -78.82 REMARK 500 2 ASP A 50 -75.36 -141.39 REMARK 500 2 ASN A 73 17.49 -146.18 REMARK 500 2 ASN A 74 81.35 -153.43 REMARK 500 2 GLN A 81 53.94 -111.17 REMARK 500 3 LEU A 6 -146.67 -85.48 REMARK 500 3 TYR A 8 -6.68 57.27 REMARK 500 3 LEU A 15 78.65 -107.12 REMARK 500 3 ASP A 31 -68.13 -167.24 REMARK 500 3 ALA A 43 -90.56 -118.98 REMARK 500 3 ASN A 79 125.33 -177.73 REMARK 500 4 LEU A 6 -155.37 -81.49 REMARK 500 4 TYR A 8 16.79 48.88 REMARK 500 4 ASP A 31 -67.28 -172.83 REMARK 500 4 SER A 42 88.95 -67.75 REMARK 500 4 SER A 44 27.95 -151.31 REMARK 500 4 LYS A 58 -72.06 -86.57 REMARK 500 4 ARG A 69 110.26 -170.10 REMARK 500 4 ASN A 74 93.23 -169.15 REMARK 500 5 LEU A 6 -148.08 -82.64 REMARK 500 5 TYR A 8 -6.26 50.94 REMARK 500 5 LEU A 15 79.52 -112.21 REMARK 500 5 ASP A 31 -53.42 -175.52 REMARK 500 5 ALA A 43 -48.85 -162.86 REMARK 500 5 ILE A 52 -61.38 -126.20 REMARK 500 5 ARG A 69 128.26 -176.67 REMARK 500 5 ASN A 79 117.24 -173.51 REMARK 500 6 LYS A 18 69.40 -102.11 REMARK 500 6 ARG A 23 86.38 -165.59 REMARK 500 6 GLN A 24 29.63 -47.16 REMARK 500 6 ASP A 31 -54.83 -176.06 REMARK 500 6 ASN A 32 27.43 -144.15 REMARK 500 6 ALA A 43 -76.17 170.72 REMARK 500 6 ASP A 50 -75.91 -101.77 REMARK 500 6 ILE A 52 -68.03 -127.52 REMARK 500 6 ASN A 79 118.02 179.60 REMARK 500 7 TYR A 8 7.63 50.42 REMARK 500 7 GLN A 9 42.73 -146.02 REMARK 500 7 ASP A 31 -68.13 -154.71 REMARK 500 7 ASN A 32 10.72 -147.64 REMARK 500 7 LEU A 72 120.63 176.26 REMARK 500 7 ASN A 74 88.90 -162.04 REMARK 500 7 ASN A 79 140.30 175.25 REMARK 500 8 LEU A 6 -163.35 -70.15 REMARK 500 8 TYR A 8 16.49 54.05 REMARK 500 8 LEU A 15 61.63 -108.60 REMARK 500 8 TYR A 30 38.88 -97.65 REMARK 500 8 ASP A 31 102.86 70.60 REMARK 500 8 ALA A 43 -44.85 75.35 REMARK 500 8 ASP A 50 79.92 -157.63 REMARK 500 8 GLN A 81 79.21 -105.30 REMARK 500 9 LEU A 6 -163.33 -75.25 REMARK 500 9 LEU A 15 75.53 -109.63 REMARK 500 9 ASP A 31 -59.83 -163.14 REMARK 500 9 ASN A 32 40.53 -147.07 REMARK 500 9 ILE A 41 34.41 -92.27 REMARK 500 9 ASP A 50 65.12 -150.96 REMARK 500 9 LYS A 58 -149.10 -113.54 REMARK 500 9 LEU A 72 -93.96 -131.22 REMARK 500 9 ASN A 74 80.62 -158.88 REMARK 500 9 ASN A 79 137.51 170.41 REMARK 500 10 LEU A 6 -171.03 -61.45 REMARK 500 10 TYR A 8 20.83 49.73 REMARK 500 10 LEU A 15 76.35 -105.27 REMARK 500 10 ARG A 23 62.47 61.13 REMARK 500 10 ASP A 31 -58.67 -170.18 REMARK 500 10 SER A 44 95.36 -50.86 REMARK 500 10 ALA A 46 130.61 -176.02 REMARK 500 10 ILE A 52 -60.55 -90.48 REMARK 500 10 ARG A 69 107.10 -162.92 REMARK 500 10 ASN A 74 83.28 -158.47 REMARK 500 10 ASN A 79 101.94 -164.35 REMARK 500 10 GLN A 81 77.60 -115.65 REMARK 500 11 ASP A 4 117.53 -37.78 REMARK 500 11 LEU A 6 -162.14 -70.45 REMARK 500 11 TYR A 8 16.09 51.72 REMARK 500 11 ARG A 23 67.60 63.44 REMARK 500 11 ASP A 31 -64.52 -166.94 REMARK 500 11 ASN A 32 33.29 -148.12 REMARK 500 11 ALA A 43 -54.64 -164.44 REMARK 500 11 ARG A 69 107.72 -168.06 REMARK 500 11 ASN A 74 88.37 -171.58 REMARK 500 11 ASN A 79 111.92 -172.42 REMARK 500 12 LEU A 6 -160.35 -75.36 REMARK 500 12 GLN A 9 116.03 -161.23 REMARK 500 12 ASP A 31 -66.99 -165.74 REMARK 500 12 ASN A 32 20.58 -142.92 REMARK 500 12 ALA A 43 -46.41 174.36 REMARK 500 12 ASP A 50 -77.16 -125.72 REMARK 500 12 ARG A 69 115.61 -165.28 REMARK 500 12 ASN A 79 135.56 178.73 REMARK 500 13 GLN A 2 -145.61 -147.01 REMARK 500 13 TYR A 8 16.36 48.79 REMARK 500 13 ASP A 31 -45.31 -157.25 REMARK 500 13 ASN A 32 15.80 -141.19 REMARK 500 13 SER A 44 84.23 58.47 REMARK 500 13 ASN A 79 104.21 -164.68 REMARK 500 14 LEU A 6 -158.86 -78.23 REMARK 500 14 TYR A 8 13.60 51.28 REMARK 500 14 ASP A 31 -49.92 -137.23 REMARK 500 14 ASN A 32 26.84 -156.14 REMARK 500 14 ALA A 43 -36.17 -177.81 REMARK 500 14 LEU A 72 132.82 176.64 REMARK 500 14 ASN A 74 80.30 -159.19 REMARK 500 15 LEU A 6 -157.29 -72.85 REMARK 500 15 TYR A 8 15.48 51.42 REMARK 500 15 LEU A 15 70.86 -101.02 REMARK 500 15 ASP A 31 -55.46 -165.65 REMARK 500 15 ASN A 32 28.62 -148.52 REMARK 500 15 SER A 42 -165.50 -106.24 REMARK 500 15 ALA A 43 -40.97 -163.91 REMARK 500 15 ASP A 50 67.66 -153.45 REMARK 500 15 ASN A 73 19.03 -145.47 REMARK 500 15 ASN A 79 125.98 -172.97 REMARK 500 16 LEU A 6 -152.99 -78.69 REMARK 500 16 TYR A 8 18.45 47.69 REMARK 500 16 GLN A 9 43.77 -147.56 REMARK 500 16 ASP A 31 -58.51 173.27 REMARK 500 16 ALA A 43 -86.65 -158.99 REMARK 500 16 ARG A 69 111.45 -168.55 REMARK 500 16 ASN A 73 23.21 -141.06 REMARK 500 16 ASN A 74 87.08 -153.28 REMARK 500 16 ASN A 79 119.76 -170.54 REMARK 500 17 ASP A 31 -65.60 -166.58 REMARK 500 17 ALA A 46 112.98 -162.48 REMARK 500 17 LYS A 58 71.25 -119.27 REMARK 500 17 ARG A 69 134.34 164.92 REMARK 500 17 LEU A 72 114.98 -161.18 REMARK 500 17 ASN A 74 88.49 -159.19 REMARK 500 17 ASN A 79 111.43 -169.12 REMARK 500 18 LEU A 6 -165.94 -73.80 REMARK 500 18 ASP A 31 -63.53 -160.79 REMARK 500 18 ASN A 32 38.08 -147.64 REMARK 500 18 ASN A 79 117.84 -170.43 REMARK 500 19 LEU A 6 -161.44 -78.82 REMARK 500 19 TYR A 8 23.00 49.85 REMARK 500 19 ASP A 31 -52.86 -163.89 REMARK 500 19 ALA A 43 -165.34 -167.98 REMARK 500 19 SER A 44 94.83 -68.01 REMARK 500 19 LEU A 72 128.47 -173.81 REMARK 500 19 ASN A 79 112.76 -177.24 REMARK 500 20 LEU A 6 -146.18 -110.70 REMARK 500 20 TYR A 8 -1.07 51.94 REMARK 500 20 LEU A 15 71.63 -104.55 REMARK 500 20 LYS A 18 77.07 -108.15 REMARK 500 20 ASP A 31 -58.04 71.98 REMARK 500 20 ASN A 32 27.07 -141.20 REMARK 500 20 ALA A 43 -154.06 -171.28 REMARK 500 20 SER A 44 95.51 -62.38 REMARK 500 20 ASP A 68 -35.18 172.97 REMARK 500 20 ARG A 69 119.59 -170.25 REMARK 500 20 ASN A 79 113.36 -165.29 REMARK 500 20 PRO A 80 -98.77 -65.63 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 4 ARG A 47 0.11 SIDE_CHAIN REMARK 500 9 ARG A 69 0.08 SIDE_CHAIN REMARK 500 REMARK 500 REMARK: NULL
DBREF 2F09 A 1 82 UNP P28224 YDHA_ECOLI 28 109
SEQADV 2F09 MET A -19 UNP P28224 CLONING ARTIFACT SEQADV 2F09 GLY A -18 UNP P28224 CLONING ARTIFACT SEQADV 2F09 SER A -17 UNP P28224 CLONING ARTIFACT SEQADV 2F09 SER A -16 UNP P28224 CLONING ARTIFACT SEQADV 2F09 HIS A -15 UNP P28224 EXPRESSION TAG SEQADV 2F09 HIS A -14 UNP P28224 EXPRESSION TAG SEQADV 2F09 HIS A -13 UNP P28224 EXPRESSION TAG SEQADV 2F09 HIS A -12 UNP P28224 EXPRESSION TAG SEQADV 2F09 HIS A -11 UNP P28224 EXPRESSION TAG SEQADV 2F09 HIS A -10 UNP P28224 EXPRESSION TAG SEQADV 2F09 SER A -9 UNP P28224 CLONING ARTIFACT SEQADV 2F09 SER A -8 UNP P28224 CLONING ARTIFACT SEQADV 2F09 GLY A -7 UNP P28224 CLONING ARTIFACT SEQADV 2F09 LEU A -6 UNP P28224 CLONING ARTIFACT SEQADV 2F09 VAL A -5 UNP P28224 CLONING ARTIFACT SEQADV 2F09 PRO A -4 UNP P28224 CLONING ARTIFACT SEQADV 2F09 ARG A -3 UNP P28224 CLONING ARTIFACT SEQADV 2F09 GLY A -2 UNP P28224 CLONING ARTIFACT SEQADV 2F09 SER A -1 UNP P28224 CLONING ARTIFACT SEQADV 2F09 HIS A 0 UNP P28224 CLONING ARTIFACT
SEQRES 1 A 102 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 102 LEU VAL PRO ARG GLY SER HIS MET GLN THR ASP THR LEU SEQRES 3 A 102 GLU TYR GLN CYS ASP GLU LYS PRO LEU THR VAL LYS LEU SEQRES 4 A 102 ASN ASN PRO ARG GLN GLU VAL SER PHE VAL TYR ASP ASN SEQRES 5 A 102 GLN LEU LEU HIS LEU LYS GLN GLY ILE SER ALA SER GLY SEQRES 6 A 102 ALA ARG TYR THR ASP GLY ILE TYR VAL PHE TRP SER LYS SEQRES 7 A 102 GLY ASP GLU ALA THR VAL TYR LYS ARG ASP ARG ILE VAL SEQRES 8 A 102 LEU ASN ASN CYS GLN LEU GLN ASN PRO GLN ARG
SHEET 1 A 7 VAL A 17 LEU A 19 0 SHEET 2 A 7 GLU A 25 VAL A 29 -1 O SER A 27 N LYS A 18 SHEET 3 A 7 LEU A 34 GLN A 39 -1 O LEU A 35 N PHE A 28 SHEET 4 A 7 ALA A 46 THR A 49 -1 O THR A 49 N LYS A 38 SHEET 5 A 7 VAL A 54 SER A 57 -1 O SER A 57 N ALA A 46 SHEET 6 A 7 ALA A 62 TYR A 65 -1 O THR A 63 N TRP A 56 SHEET 7 A 7 ILE A 70 LEU A 72 -1 O LEU A 72 N VAL A 64
SSBOND 1 CYS A 10 CYS A 75 1555 1555 2.04
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000