10 20 30 40 50 60 70 80 2EZI - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER DNA-BINDING PROTEIN 25-JUL-97 2EZI
TITLE SOLUTION NMR STRUCTURE OF THE IGAMMA SUBDOMAIN OF THE MU TITLE 2 END DNA BINDING DOMAIN OF MU PHAGE TRANSPOSASE, 30 TITLE 3 STRUCTURES
COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSPOSASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: IGAMMA SUBDOMAIN, RESIDUES 174 - 247; COMPND 5 OTHER_DETAILS: MUA OF PHAGE MU TRANSPOSASE
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ENTEROBACTERIA PHAGE MU; SOURCE 3 ORGANISM_TAXID: 10677
KEYWDS DNA-BINDING PROTEIN, TRANSPOSITION
EXPDTA SOLUTION NMR
NUMMDL 30
AUTHOR G.M.CLORE,R.T.CLUBB,S.SCHUMAKER,A.M.GRONENBORN
REVDAT 2 24-FEB-09 2EZI 1 VERSN REVDAT 1 03-DEC-97 2EZI 0
JRNL AUTH R.T.CLUBB,S.SCHUMACHER,K.MIZUUCHI,A.M.GRONENBORN, JRNL AUTH 2 G.M.CLORE JRNL TITL SOLUTION STRUCTURE OF THE I GAMMA SUBDOMAIN OF THE JRNL TITL 2 MU END DNA-BINDING DOMAIN OF PHAGE MU TRANSPOSASE. JRNL REF J.MOL.BIOL. V. 273 19 1997 JRNL REFN ISSN 0022-2836 JRNL PMID 9367742 JRNL DOI 10.1006/JMBI.1997.1312
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR (SEE ABOVE) ABOVE) REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 THE 3D STRUCTURE OF THE IGAMMA SUBDOMAIN OF MU A REMARK 3 TRANSPOSASE WAS SOLVED BY MULTI-DIMENSIONAL HETERONUCLEAR REMARK 3 NMR AND IS BASED ON 1293 EXPERIMENTAL NMR RESTRAINTS: REMARK 3 264 SEQUENTIAL (|I- J|=1), 282 MEDIUM RANGE (1 < |I-J| <=5) REMARK 3 AND 178 LONG RANGE (|I-J| >5) INTERRESIDUES AND 245 REMARK 3 INTRARESIDUE APPROXIMATE INTERPROTON DISTANCE RESTRAINTS; REMARK 3 40 DISTANCE RESTRAINTS FOR 20 BACKBONE H-BONDS; REMARK 3 108 TORSION ANGLE RESTRAINTS; 47 THREE-BOND HN-HA COUPLING REMARK 3 CONSTANT RESTRAINTS; AND 129 (66 CALPHA AND 63 CBETA) 13C REMARK 3 SHIFT RESTRAINTS. REMARK 3 REMARK 3 THE STRUCTURES WERE CALCULATED USING THE SIMULATED REMARK 3 ANNEALING PROTOCOL OF NILGES ET AL. (1988) FEBS LETT. 229, REMARK 3 129-136 USING THE PROGRAM X-PLOR 3.1 (BRUNGER) MODIFIED TO REMARK 3 INCORPORATE COUPLING CONSTANT (GARRETT ET AL. (1984) J. REMARK 3 MAGN. RESON. SERIES B 104, 99-103) AND CARBON CHEMICAL REMARK 3 SHIFT (KUSZEWSKI ET AL. (1995) J. MAGN. RESON. SERIES B REMARK 3 106, 92-96) RESTRAINTS, AND A CONFORMATIONAL DATABASE REMARK 3 POTENTIAL (KUSZEWSKI ET AL. (1996) PROTEIN SCI. 5, REMARK 3 1067-1080; KUSZEWSKI ET AL. (1997) J. MAGN. RESON 125, REMARK 3 171-177). REMARK 3 REMARK 3 THE RESTRAINED REGULARIZED MEAN STRUCTURE IS PRESENTED IN REMARK 3 ENTRY 2EZH AND 30 STRUCTURES ARE PRESENTED IN ENTRY 2EZI, REMARK 3 AND THE EXPERIMENTAL RESTRAINTS IN 2EZHMR. IN THE REMARK 3 RESTRAINED REGULARIZED MEAN COORDINATES (2EZH) THE LAST REMARK 3 COLUMN REPRESENTS THE AVERAGE RMS DIFFERENCE BETWEEN THE REMARK 3 INDIVIDUAL SIMULATED ANNEALING STRUCTURES AND THE MEAN REMARK 3 COORDINATE POSITIONS. THE LAST COLUMN IN THE INDIVIDUAL SA REMARK 3 STRUCTURES (2EZI) HAS NO MEANING. BEST FITTING TO GENERATE REMARK 3 THE AVERAGE STRUCTURE IS WITH RESPECT TO RESIDUES 180 - REMARK 3 240. NOTE THAT THE OCCUPANCY FIELD HAS NO MEANING.
REMARK 4 REMARK 4 2EZI COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 303 REMARK 210 PH : 6.3 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : NULL REMARK 210 SAMPLE CONTENTS : NULL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : NULL REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ, 600 MHZ REMARK 210 SPECTROMETER MODEL : AMX500, AMX600 REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : X-PLOR (SEE ABOVE) ABOVE) REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : NULL REMARK 210 CONFORMERS, NUMBER SUBMITTED : 30 REMARK 210 CONFORMERS, SELECTION CRITERIA : NULL REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 GLU A 179 10.98 -149.41 REMARK 500 1 ASP A 232 159.84 101.86 REMARK 500 1 GLU A 241 -4.40 -57.13 REMARK 500 1 LEU A 246 -43.96 -155.46 REMARK 500 2 PRO A 195 0.09 -65.45 REMARK 500 2 LYS A 197 66.67 64.26 REMARK 500 2 ASP A 232 153.48 110.07 REMARK 500 2 HIS A 244 -11.04 -153.68 REMARK 500 3 LEU A 231 -84.67 -67.48 REMARK 500 3 ASP A 232 147.58 -175.81 REMARK 500 3 ARG A 240 58.47 -91.96 REMARK 500 3 GLU A 243 -53.28 -160.76 REMARK 500 4 LYS A 197 59.39 39.75 REMARK 500 4 PRO A 198 -172.91 -54.17 REMARK 500 4 LEU A 231 -86.07 -68.59 REMARK 500 5 GLU A 179 83.48 -168.56 REMARK 500 5 PRO A 195 12.78 -60.19 REMARK 500 5 LEU A 231 -86.42 -70.67 REMARK 500 5 ASP A 232 147.62 -174.93 REMARK 500 6 LYS A 197 74.47 42.54 REMARK 500 6 PRO A 198 -175.28 -50.06 REMARK 500 6 ASP A 232 153.31 113.47 REMARK 500 7 HIS A 176 -110.28 -140.05 REMARK 500 7 GLU A 179 52.87 -100.19 REMARK 500 7 PRO A 198 -179.12 -56.60 REMARK 500 7 ASP A 232 150.49 174.33 REMARK 500 8 GLU A 179 38.43 -158.29 REMARK 500 8 PHE A 180 -79.74 -90.75 REMARK 500 8 PRO A 195 -6.08 -47.26 REMARK 500 8 LYS A 197 59.25 38.44 REMARK 500 8 LEU A 231 -75.60 -72.31 REMARK 500 8 ASP A 232 148.76 174.71 REMARK 500 8 GLU A 243 118.90 -160.46 REMARK 500 8 ALA A 245 63.75 -162.97 REMARK 500 9 PHE A 180 7.06 -156.35 REMARK 500 9 ASP A 181 4.50 -53.75 REMARK 500 9 PRO A 195 -35.68 -39.53 REMARK 500 9 PRO A 198 174.63 -52.73 REMARK 500 9 ASP A 232 156.35 102.90 REMARK 500 10 LYS A 197 65.29 65.97 REMARK 500 10 LEU A 231 -78.34 -70.94 REMARK 500 10 ASP A 232 144.07 -177.72 REMARK 500 10 HIS A 244 28.44 -147.77 REMARK 500 10 ALA A 245 -71.43 -79.99 REMARK 500 11 ASP A 181 108.44 -49.33 REMARK 500 11 LYS A 197 62.43 66.07 REMARK 500 11 LEU A 231 -90.17 -66.33 REMARK 500 11 CYS A 239 -111.35 -74.46 REMARK 500 11 GLU A 243 -37.76 -159.53 REMARK 500 12 PRO A 195 -5.93 -58.38 REMARK 500 12 PRO A 198 -179.99 -68.55 REMARK 500 12 LEU A 231 -82.99 -64.80 REMARK 500 12 ASP A 232 143.06 -175.55 REMARK 500 12 ALA A 245 -129.17 -73.37 REMARK 500 13 PHE A 180 -131.35 -153.52 REMARK 500 13 PRO A 198 -175.22 -50.64 REMARK 500 13 ASP A 232 163.10 102.81 REMARK 500 13 ARG A 240 49.22 -89.27 REMARK 500 13 ALA A 245 -115.97 -71.64 REMARK 500 13 LEU A 246 79.62 -153.39 REMARK 500 14 SER A 178 -73.86 -132.94 REMARK 500 14 PHE A 180 -81.63 -139.75 REMARK 500 14 LYS A 197 53.45 39.53 REMARK 500 14 PRO A 198 172.10 -42.57 REMARK 500 14 LEU A 231 -84.06 -65.52 REMARK 500 14 ARG A 240 -79.32 -89.39 REMARK 500 14 LEU A 246 -70.02 -80.86 REMARK 500 15 PHE A 180 -83.58 -94.72 REMARK 500 15 PRO A 219 178.31 -48.96 REMARK 500 15 ASP A 232 158.43 104.05 REMARK 500 15 LEU A 246 -70.32 -85.35 REMARK 500 16 ASP A 232 158.05 103.33 REMARK 500 16 ALA A 238 -89.94 -52.25 REMARK 500 17 GLU A 179 56.31 -161.48 REMARK 500 17 LYS A 197 63.98 36.18 REMARK 500 17 LEU A 231 -81.28 -67.42 REMARK 500 17 ASP A 232 147.21 -176.02 REMARK 500 17 ALA A 238 -89.59 -53.62 REMARK 500 17 GLU A 241 94.14 -51.09 REMARK 500 17 LEU A 246 -45.08 -146.98 REMARK 500 18 ASP A 181 107.31 -45.25 REMARK 500 18 LEU A 231 -86.46 -69.81 REMARK 500 18 ALA A 238 -102.81 -56.46 REMARK 500 18 ARG A 240 35.47 -71.58 REMARK 500 19 VAL A 175 149.24 53.31 REMARK 500 19 SER A 178 3.84 -173.83 REMARK 500 19 ASP A 181 109.72 -46.79 REMARK 500 19 LEU A 231 -79.41 -69.74 REMARK 500 19 ASP A 232 149.22 -177.01 REMARK 500 19 GLU A 243 -26.02 -151.79 REMARK 500 19 ALA A 245 99.27 -161.67 REMARK 500 20 LYS A 197 62.92 38.00 REMARK 500 20 PRO A 198 177.08 -42.98 REMARK 500 20 LEU A 231 -90.98 -66.33 REMARK 500 20 GLU A 243 10.34 -145.83 REMARK 500 20 LEU A 246 41.06 -89.02 REMARK 500 21 LYS A 197 62.92 38.00 REMARK 500 21 PRO A 198 177.08 -42.98 REMARK 500 21 LEU A 231 -90.98 -66.33 REMARK 500 21 GLU A 243 10.34 -145.83 REMARK 500 21 LEU A 246 41.06 -89.02 REMARK 500 22 GLU A 179 65.44 -171.40 REMARK 500 22 ASP A 232 150.72 108.15 REMARK 500 22 ALA A 238 -109.57 -58.68 REMARK 500 22 ARG A 240 30.01 -80.17 REMARK 500 22 ALA A 245 -167.13 -72.07 REMARK 500 23 HIS A 176 -163.39 -162.94 REMARK 500 23 PHE A 180 -92.09 -151.49 REMARK 500 23 ASP A 181 48.99 -65.85 REMARK 500 23 LYS A 197 62.17 37.47 REMARK 500 23 PRO A 198 166.61 -48.71 REMARK 500 23 ASP A 232 157.44 100.07 REMARK 500 23 ARG A 240 -78.03 -90.08 REMARK 500 23 GLU A 241 -77.71 -71.88 REMARK 500 23 GLU A 243 27.85 -158.79 REMARK 500 23 ALA A 245 94.94 -167.24 REMARK 500 24 HIS A 176 29.71 29.55 REMARK 500 24 LYS A 177 70.41 -110.13 REMARK 500 24 GLU A 179 98.35 -66.24 REMARK 500 24 LYS A 197 62.37 38.60 REMARK 500 24 LEU A 231 -83.04 -66.81 REMARK 500 24 CYS A 239 -105.82 -71.22 REMARK 500 24 LEU A 246 -55.83 -149.83 REMARK 500 25 HIS A 176 -152.56 -148.04 REMARK 500 25 GLU A 179 -59.90 -137.65 REMARK 500 25 ASP A 181 10.01 -61.13 REMARK 500 25 PRO A 198 -175.51 -56.04 REMARK 500 25 PRO A 219 -166.46 -56.68 REMARK 500 25 LEU A 231 -87.59 -69.16 REMARK 500 25 ASP A 232 146.22 -175.38 REMARK 500 25 ARG A 240 42.08 -90.06 REMARK 500 26 GLU A 179 -4.93 -174.56 REMARK 500 26 PHE A 180 -107.57 -89.52 REMARK 500 26 PRO A 195 -33.14 -39.84 REMARK 500 26 PRO A 198 161.08 -49.20 REMARK 500 26 LEU A 231 -81.05 -66.55 REMARK 500 26 CYS A 239 -73.46 -72.76 REMARK 500 26 HIS A 244 -64.79 -163.95 REMARK 500 27 GLU A 179 94.76 -52.24 REMARK 500 27 PHE A 180 -73.29 -87.23 REMARK 500 27 ASP A 181 92.73 -59.89 REMARK 500 27 PRO A 195 -6.62 -46.51 REMARK 500 27 LYS A 197 66.36 29.89 REMARK 500 27 ASP A 232 151.60 109.66 REMARK 500 27 ALA A 238 -84.86 -60.00 REMARK 500 28 VAL A 175 -136.58 -132.27 REMARK 500 28 LYS A 197 64.20 34.25 REMARK 500 28 PRO A 198 -170.64 -48.45 REMARK 500 28 LEU A 231 -86.88 -65.33 REMARK 500 28 GLU A 243 1.14 -153.55 REMARK 500 28 ALA A 245 28.53 -70.19 REMARK 500 29 LEU A 231 -91.46 -69.71 REMARK 500 29 ALA A 238 -93.02 -54.55 REMARK 500 30 GLU A 179 -100.84 -91.10 REMARK 500 30 PHE A 180 63.59 -167.98 REMARK 500 30 ASP A 181 102.08 -58.36 REMARK 500 30 PRO A 195 0.34 -59.84 REMARK 500 30 LEU A 231 -83.81 -71.16 REMARK 500 30 ASP A 232 145.81 -175.52 REMARK 500 REMARK 500 REMARK: NULL
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2EZH RELATED DB: PDB
DBREF 2EZI A 174 247 UNP P07636 TRA_BPMU 174 247
SEQRES 1 A 75 MET ASN VAL HIS LYS SER GLU PHE ASP GLU ASP ALA TRP SEQRES 2 A 75 GLN PHE LEU ILE ALA ASP TYR LEU ARG PRO GLU LYS PRO SEQRES 3 A 75 ALA PHE ARG LYS CYS TYR GLU ARG LEU GLU LEU ALA ALA SEQRES 4 A 75 ARG GLU HIS GLY TRP SER ILE PRO SER ARG ALA THR ALA SEQRES 5 A 75 PHE ARG ARG ILE GLN GLN LEU ASP GLU ALA MET VAL VAL SEQRES 6 A 75 ALA CYS ARG GLU GLY GLU HIS ALA LEU MET
HELIX 1 1 GLU A 182 TYR A 192 1 11 HELIX 2 2 PHE A 200 HIS A 214 1 15 HELIX 3 3 ARG A 221 LEU A 231 1 11 HELIX 4 4 GLU A 233 ARG A 240 5 8
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000