2EVY - Header Asymmetric Unit

HEADER RNA 01-NOV-05 2EVY

TITLE GNYA TETRANUCLEOTIDE LOOPS FOUND IN POLIOVIRUS ORIL BY IN TITLE 2 VIVO SELEX (UN)EXPECTEDLY FORM A YNMG-LIKE STRUCTURE

COMPND MOL_ID: 1; COMPND 2 MOLECULE: POLIOVIRUS 5'NTR CLOVERLEAF STEM LOOP D MUTANT; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: POLIOVIRUS 5'NTR CLOVERLEAF STEM LOOP D; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES

SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 OTHER_DETAILS: THIS SEQUENCE NATURALLY OCCURS IN THE POLIO SOURCE 4 VIRUS

KEYWDS POLIOVIRUS, 5'NTR, CLOVERLEAF, GNYA TETRANUCLEOITDE LOOP, KEYWDS 2 RNA

EXPDTA SOLUTION NMR

NUMMDL 18

AUTHOR W.J.G.MELCHERS,J.ZOLL,M.TESSARI,D.V.BAKHMUTOV,A.P.GMYL, AUTHOR 2 V.I.AGOL,H.A.HEUS

REVDAT 4 24-FEB-09 2EVY 1 VERSN REVDAT 3 12-SEP-06 2EVY 1 JRNL REVDAT 2 05-SEP-06 2EVY 1 JRNL REVDAT 1 22-AUG-06 2EVY 0

JRNL AUTH W.J.G.MELCHERS,J.ZOLL,M.TESSARI,D.V.BAKHMUTOV, JRNL AUTH 2 A.P.GMYL,V.I.AGOL,H.A.HEUS JRNL TITL A GCUA TETRANUCLEOTIDE LOOP FOUND IN THE JRNL TITL 2 POLIOVIRUS ORIL BY IN VIVO SELEX (UN)EXPECTEDLY JRNL TITL 3 FORMS A YNMG-LIKE STRUCTURE: EXTENDING THE YNMG JRNL TITL 4 FAMILY WITH GYYA. JRNL REF RNA V. 12 1671 2006 JRNL REFN ISSN 1355-8382 JRNL PMID 16894217 JRNL DOI 10.1261/RNA.113106

REMARK 1

REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.

REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR X-PLOR NIH REMARK 3 AUTHORS : A.T. BRUNGER REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL

REMARK 4 REMARK 4 2EVY COMPLIES WITH FORMAT V. 3.15, 01-DEC-08

REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-NOV-05. REMARK 100 THE RCSB ID CODE IS RCSB035158.

REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 300; 300 REMARK 210 PH : 6.2; 6.2 REMARK 210 IONIC STRENGTH : 5 MM; 5 MM REMARK 210 PRESSURE : AMBIENT; AMBIENT REMARK 210 SAMPLE CONTENTS : 1 MM OLIGONUCLEOTIDE;; 1 MM REMARK 210 OLIGONUCLEOTIDE REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D NOESY, 2D TOCSY, DQF-COSY, REMARK 210 13C, 1H HSQC REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ, 800 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 2.1, SPARKY 3.106, X- REMARK 210 PLOR X-PLOR NIH REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 18 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL

REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.

REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 1 G A 10 O4' - C1' - N9 ANGL. DEV. = 4.5 DEGREES REMARK 500 2 G A 10 O4' - C1' - N9 ANGL. DEV. = 4.4 DEGREES REMARK 500 3 G A 10 O4' - C1' - N9 ANGL. DEV. = 4.4 DEGREES REMARK 500 5 G A 10 O4' - C1' - N9 ANGL. DEV. = 4.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL

DBREF 2EVY A 1 14 PDB 2EVY 2EVY 1 14

SEQRES 1 A 14 G G U A U G C U A G U A C SEQRES 2 A 14 C

CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1

ORIGX1 1.000000 0.000000 0.000000 0.00000

ORIGX2 0.000000 1.000000 0.000000 0.00000

ORIGX3 0.000000 0.000000 1.000000 0.00000

SCALE1 1.000000 0.000000 0.000000 0.00000

SCALE2 0.000000 1.000000 0.000000 0.00000

SCALE3 0.000000 0.000000 1.000000 0.00000