10 20 30 40 50 60 70 80 2ESY - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER LIPID BINDING PROTEIN 27-OCT-05 2ESY
TITLE STRUCTURE AND INFLUENCE ON STABILITY AND ACTIVITY OF THE N- TITLE 2 TERMINAL PROPETIDE PART OF LUNG SURFACTANT PROTEIN C
COMPND MOL_ID: 1; COMPND 2 MOLECULE: LUNG SURFACTANT PROTEIN C; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 OTHER_DETAILS: PEPTIDE SYNTHESIS USING F-MOC CHEMISTRY. SOURCE 4 THE SEQUENCE OF THE PEPTIDE IS NATURALLY FOUND IN HUMAN.
KEYWDS N-TERMINAL PART OF LUNG SURFACTANT PROTEIN C, LIPID BINDING KEYWDS 2 PROTEIN
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR J.LI,E.LIEPINSH,A.ALMLEN,J.THYBERG,T.CURSTEDT,H.JORNVALL, AUTHOR 2 J.JOHANSSON
REVDAT 3 24-FEB-09 2ESY 1 VERSN REVDAT 2 28-FEB-06 2ESY 1 JRNL REVDAT 1 15-NOV-05 2ESY 0
JRNL AUTH J.LI,E.LIEPINSH,A.ALMLEN,J.THYBERG,T.CURSTEDT, JRNL AUTH 2 H.JORNVALL,J.JOHANSSON JRNL TITL STRUCTURE AND INFLUENCE ON STABILITY AND ACTIVITY JRNL TITL 2 OF THE N-TERMINAL PROPEPTIDE PART OF LUNG JRNL TITL 3 SURFACTANT PROTEIN C JRNL REF FEBS J. V. 273 926 2006 JRNL REFN ISSN 1742-464X JRNL PMID 16478467 JRNL DOI 10.1111/J.1742-4658.2006.05124.X
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : OPAL 3.0 REMARK 3 AUTHORS : P.LUGINBUL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE STRUCTURES ARE BASED ON A TOTAL REMARK 3 OF 344 RESTRAINTS, 263 ARE NOE-DERIVED DISTANCE CONSTRAINTS, REMARK 3 81 DIHEDRAL ANGLE RESTRAINTS
REMARK 4 REMARK 4 2ESY COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 31-OCT-05. REMARK 100 THE RCSB ID CODE IS RCSB035053.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 297; 287 REMARK 210 PH : 7.5; 7 REMARK 210 IONIC STRENGTH : 0.1; 0 REMARK 210 PRESSURE : AMBIENT; AMBIENT REMARK 210 SAMPLE CONTENTS : 0.5MM SP-CI(1-31) IN 35MM REMARK 210 [2H38]DODECYLPHOSPHOCHOLINE REMARK 210 (DPC), 50MM SODIUM PHOSPHATE REMARK 210 BUFFER; 0.5MM SP-CI(1-31) REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D NOESY, 2D TOCSY, DQF-COSY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ, 600 MHZ REMARK 210 SPECTROMETER MODEL : INOVA, DMX REMARK 210 SPECTROMETER MANUFACTURER : VARIAN, BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : VNMR 1.1.D, PROSA 3.2, XEASY REMARK 210 3.0, DYANA 2.6 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 50 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH FAVORABLE NON REMARK 210 -BOND ENERGY,STRUCTURES WITH REMARK 210 THE LEAST RESTRAINT REMARK 210 VIOLATIONS,STRUCTURES WITH THE REMARK 210 LOWEST ENERGY,TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 6 5.24 -65.09 REMARK 500 1 ALA A 7 83.77 -68.84 REMARK 500 1 ARG A 12 114.55 -160.20 REMARK 500 1 PHE A 13 76.03 26.40 REMARK 500 1 PRO A 16 -168.53 -76.91 REMARK 500 1 PHE A 17 18.64 -64.28 REMARK 500 2 TYR A 5 15.68 -55.44 REMARK 500 2 SER A 6 25.79 -60.31 REMARK 500 2 PHE A 13 76.22 23.71 REMARK 500 2 PRO A 16 -167.39 -72.27 REMARK 500 2 PHE A 17 15.40 -60.30 REMARK 500 3 TYR A 5 100.70 -43.80 REMARK 500 3 ARG A 12 90.68 -161.03 REMARK 500 3 PRO A 16 -168.47 -75.24 REMARK 500 3 PHE A 17 14.65 -61.92 REMARK 500 4 SER A 6 4.54 -59.06 REMARK 500 4 PHE A 13 76.44 23.61 REMARK 500 4 PRO A 16 -169.07 -75.73 REMARK 500 4 PHE A 17 18.14 -62.44 REMARK 500 5 PRO A 2 171.36 -59.54 REMARK 500 5 PHE A 13 76.06 31.54 REMARK 500 5 PRO A 16 -168.43 -76.01 REMARK 500 5 PHE A 17 20.28 -63.08 REMARK 500 6 PRO A 2 175.89 -52.36 REMARK 500 6 PRO A 3 46.93 -72.59 REMARK 500 6 ALA A 7 37.11 -72.88 REMARK 500 6 PHE A 13 76.20 23.87 REMARK 500 6 PRO A 16 -166.21 -73.63 REMARK 500 6 PHE A 17 14.26 -61.94 REMARK 500 7 ASP A 4 -156.63 -120.61 REMARK 500 7 SER A 6 48.16 -76.37 REMARK 500 7 ALA A 7 -166.01 -73.36 REMARK 500 7 PHE A 13 9.94 49.79 REMARK 500 7 PRO A 16 -154.22 -76.17 REMARK 500 7 PHE A 17 14.08 -60.87 REMARK 500 8 PRO A 2 172.57 -53.07 REMARK 500 8 PRO A 3 44.08 -72.99 REMARK 500 8 ASP A 4 25.69 -72.46 REMARK 500 8 PHE A 13 66.70 39.63 REMARK 500 8 PHE A 17 18.79 -62.52 REMARK 500 9 ALA A 8 160.82 -49.94 REMARK 500 9 PHE A 13 76.35 24.09 REMARK 500 9 PRO A 16 -168.73 -77.52 REMARK 500 9 PHE A 17 18.80 -63.64 REMARK 500 10 ASP A 4 54.47 -92.39 REMARK 500 10 TYR A 5 17.40 -68.74 REMARK 500 10 SER A 6 -93.43 -136.97 REMARK 500 10 PHE A 13 76.03 23.74 REMARK 500 10 PRO A 16 -169.37 -73.76 REMARK 500 10 PHE A 17 16.71 -62.29 REMARK 500 10 PRO A 19 3.55 -69.04 REMARK 500 11 SER A 6 -10.23 -46.51 REMARK 500 11 ARG A 10 115.87 -166.21 REMARK 500 11 PHE A 17 17.88 -61.39 REMARK 500 12 ASP A 4 -161.93 -115.11 REMARK 500 12 SER A 6 10.73 -65.78 REMARK 500 12 ALA A 8 105.25 -43.94 REMARK 500 12 PHE A 13 74.25 24.02 REMARK 500 12 PRO A 16 -169.85 -75.21 REMARK 500 12 PHE A 17 21.35 -63.73 REMARK 500 13 SER A 6 42.94 -94.96 REMARK 500 13 ALA A 7 3.71 -54.76 REMARK 500 13 PHE A 13 76.14 23.71 REMARK 500 13 PRO A 16 -164.36 -76.31 REMARK 500 13 PHE A 17 14.33 -62.62 REMARK 500 14 PRO A 2 175.78 -59.11 REMARK 500 14 TYR A 5 35.03 -72.28 REMARK 500 14 SER A 6 19.04 -63.12 REMARK 500 14 PHE A 13 75.89 23.76 REMARK 500 14 PRO A 16 -167.98 -72.45 REMARK 500 14 PHE A 17 16.37 -61.36 REMARK 500 15 TYR A 5 35.80 -74.58 REMARK 500 15 SER A 6 19.91 -66.88 REMARK 500 15 ALA A 7 93.88 -63.07 REMARK 500 15 ALA A 8 105.55 -43.54 REMARK 500 15 PHE A 13 75.97 27.96 REMARK 500 15 PRO A 16 -169.10 -73.82 REMARK 500 15 PHE A 17 16.43 -63.15 REMARK 500 16 TYR A 5 34.64 -141.77 REMARK 500 16 PHE A 13 76.25 24.05 REMARK 500 16 PRO A 16 -165.90 -75.40 REMARK 500 16 PHE A 17 14.41 -62.13 REMARK 500 17 PRO A 2 175.97 -47.76 REMARK 500 17 PRO A 9 105.53 -45.57 REMARK 500 17 PHE A 13 64.51 39.68 REMARK 500 17 PRO A 16 -165.67 -73.87 REMARK 500 17 PHE A 17 14.72 -60.06 REMARK 500 18 PHE A 13 75.70 24.24 REMARK 500 18 PRO A 16 -167.31 -74.87 REMARK 500 18 PHE A 17 17.31 -61.75 REMARK 500 18 PRO A 19 5.30 -69.73 REMARK 500 19 SER A 6 46.61 -70.39 REMARK 500 19 PHE A 13 75.74 25.22 REMARK 500 19 PRO A 16 -168.42 -77.35 REMARK 500 19 PHE A 17 17.25 -64.21 REMARK 500 20 SER A 6 31.74 -71.59 REMARK 500 20 ALA A 7 31.69 -75.89 REMARK 500 20 PHE A 13 75.76 26.79 REMARK 500 20 PRO A 16 -168.48 -78.99 REMARK 500 20 PHE A 17 18.83 -58.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 SER A 1 PRO A 2 1 147.18 REMARK 500 SER A 1 PRO A 2 2 148.08 REMARK 500 SER A 1 PRO A 2 4 147.80 REMARK 500 SER A 1 PRO A 2 5 148.25 REMARK 500 SER A 1 PRO A 2 6 148.12 REMARK 500 SER A 1 PRO A 2 7 148.55 REMARK 500 SER A 1 PRO A 2 8 148.37 REMARK 500 SER A 1 PRO A 2 9 146.79 REMARK 500 SER A 1 PRO A 2 11 148.77 REMARK 500 SER A 1 PRO A 2 12 147.86 REMARK 500 SER A 1 PRO A 2 15 147.79 REMARK 500 SER A 1 PRO A 2 16 147.21 REMARK 500 SER A 1 PRO A 2 19 147.76 REMARK 500 SER A 1 PRO A 2 20 149.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 3 ARG A 24 0.15 SIDE_CHAIN REMARK 500 11 ARG A 12 0.07 SIDE_CHAIN REMARK 500 18 ARG A 24 0.08 SIDE_CHAIN REMARK 500 19 ARG A 10 0.08 SIDE_CHAIN REMARK 500 REMARK 500 REMARK: NULL
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NH2 A 32
DBREF 2ESY A 1 32 PDB 2ESY 2ESY 1 32
SEQRES 1 A 32 SER PRO PRO ASP TYR SER ALA ALA PRO ARG GLY ARG PHE SEQRES 2 A 32 GLY ILE PRO PHE PHE PRO VAL HIS LEU LYS ARG LEU LEU SEQRES 3 A 32 ILE LEU LEU LEU LEU NH2
HET NH2 A 32 3
HETNAM NH2 AMINO GROUP
FORMUL 1 NH2 H2 N
HELIX 1 1 PHE A 18 LEU A 31 1 14
LINK C LEU A 31 N NH2 A 32 1555 1555 1.33
SITE 1 AC1 4 LEU A 28 LEU A 29 LEU A 30 LEU A 31
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000