10 20 30 40 50 60 70 80 2EQK - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER TRANSCRIPTION 30-MAR-07 2EQK
TITLE SOLUTION STRUCTURE OF THE TUDOR DOMAIN OF TUDOR DOMAIN- TITLE 2 CONTAINING PROTEIN 4
COMPND MOL_ID: 1; COMPND 2 MOLECULE: TUDOR DOMAIN-CONTAINING PROTEIN 4; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: TUDOR DOMAIN; COMPND 5 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: TDRD4; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P060911-18; SOURCE 8 OTHER_DETAILS: CELL FREE PROTEIN SYNTHESIS
KEYWDS NMR, TUDOR DOMAIN, TUDOR DOMAIN-CONTAINING PROTEIN 4, KEYWDS 2 STRUCTURAL GENOMICS, NPPSFA, NATIONAL PROJECT ON PROTEIN KEYWDS 3 STRUCTURAL AND FUNCTIONAL ANALYSES, RIKEN STRUCTURAL KEYWDS 4 GENOMICS/PROTEOMICS INITIATIVE, RSGI, TRANSCRIPTION
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR W.DANG,Y.MUTO,M.INOUE,T.KIGAWA,M.SHIROUZU,T.TERADA, AUTHOR 2 S.YOKOYAMA,RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE AUTHOR 3 (RSGI)
REVDAT 2 24-FEB-09 2EQK 1 VERSN REVDAT 1 02-OCT-07 2EQK 0
JRNL AUTH W.DANG,Y.MUTO,M.INOUE,T.KIGAWA,M.SHIROUZU,T.TERADA, JRNL AUTH 2 S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE TUDOR DOMAIN OF TUDOR JRNL TITL 2 DOMAIN-CONTAINING PROTEIN 4 JRNL REF TO BE PUBLISHED JRNL REFN
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 2.0.17 REMARK 3 AUTHORS : GUNTERT,P. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 2EQK COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 15-JUN-07. REMARK 100 THE RCSB ID CODE IS RCSB026985.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.0MM 13C, 15N-LABELED REMARK 210 PROTEIN; 20MM D-TRIS-HCL (PH REMARK 210 7.0); 100MM NACL; 1MM D-DTT; REMARK 210 0.02% NAN3; 90% H2O, 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY, 3D_ REMARK 210 13C-SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR 2.6, NMRPIPE REMARK 210 20031121, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.9814, CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS, REMARK 210 STRUCTURES WITH THE LOWEST REMARK 210 ENERGY, TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 MET A 8 -75.35 -58.19 REMARK 500 1 TRP A 17 151.33 -42.31 REMARK 500 1 GLN A 33 -71.16 -89.85 REMARK 500 1 ILE A 43 94.11 -47.52 REMARK 500 1 LEU A 56 48.88 -81.94 REMARK 500 1 TYR A 57 -33.91 -36.04 REMARK 500 1 THR A 79 78.90 -117.84 REMARK 500 1 SER A 84 116.54 -167.80 REMARK 500 2 SER A 5 108.52 -43.18 REMARK 500 2 MET A 8 -75.39 -51.86 REMARK 500 2 TRP A 17 150.16 -38.40 REMARK 500 2 PRO A 19 99.56 -69.74 REMARK 500 2 ILE A 43 90.51 -44.63 REMARK 500 2 LEU A 56 48.75 -77.11 REMARK 500 2 TYR A 57 -37.06 -34.12 REMARK 500 2 MET A 80 173.37 -50.96 REMARK 500 2 LEU A 83 145.80 -34.51 REMARK 500 2 SER A 84 115.55 -164.22 REMARK 500 3 MET A 8 -75.38 -38.15 REMARK 500 3 SER A 15 157.89 -40.92 REMARK 500 3 ILE A 43 89.08 -51.24 REMARK 500 3 LEU A 56 49.39 -78.49 REMARK 500 3 TYR A 57 -36.46 -35.96 REMARK 500 3 LEU A 73 93.47 -62.45 REMARK 500 3 SER A 84 44.97 -108.62 REMARK 500 4 MET A 8 -75.51 -46.10 REMARK 500 4 PRO A 19 90.97 -69.73 REMARK 500 4 ILE A 43 96.47 -41.33 REMARK 500 4 VAL A 47 -72.42 -80.38 REMARK 500 4 TYR A 57 -31.12 -38.38 REMARK 500 4 LEU A 83 109.23 -49.74 REMARK 500 5 SER A 5 97.60 -41.67 REMARK 500 5 MET A 8 -75.39 -53.20 REMARK 500 5 PRO A 19 92.38 -69.76 REMARK 500 5 ILE A 43 94.10 -52.05 REMARK 500 5 LEU A 56 48.74 -75.86 REMARK 500 5 TYR A 57 -34.25 -35.15 REMARK 500 5 SER A 84 41.68 -88.94 REMARK 500 6 MET A 8 -75.38 -49.85 REMARK 500 6 SER A 15 174.93 -47.18 REMARK 500 6 PRO A 19 99.21 -69.83 REMARK 500 6 ASP A 25 43.53 71.07 REMARK 500 6 GLN A 33 -75.28 -73.39 REMARK 500 6 ILE A 43 95.40 -49.53 REMARK 500 6 TYR A 57 -30.57 -38.18 REMARK 500 7 MET A 8 -75.44 -58.97 REMARK 500 7 PRO A 19 98.99 -69.80 REMARK 500 7 GLN A 33 -73.67 -76.30 REMARK 500 7 ILE A 43 91.10 -46.75 REMARK 500 7 LEU A 56 47.66 -76.78 REMARK 500 7 TYR A 57 -37.82 -35.00 REMARK 500 7 GLU A 74 -175.51 -57.43 REMARK 500 7 MET A 80 69.17 -102.55 REMARK 500 8 SER A 3 168.25 -49.62 REMARK 500 8 SER A 5 41.33 -86.44 REMARK 500 8 MET A 8 -74.95 -56.25 REMARK 500 8 SER A 15 153.44 -48.03 REMARK 500 8 TRP A 17 150.12 -41.17 REMARK 500 8 PRO A 19 93.79 -69.76 REMARK 500 8 ASP A 25 48.15 70.96 REMARK 500 8 ILE A 43 94.49 -50.28 REMARK 500 8 LEU A 56 44.41 -81.63 REMARK 500 8 TYR A 57 -33.82 -33.90 REMARK 500 8 LEU A 73 94.67 -64.03 REMARK 500 8 SER A 84 76.53 -116.59 REMARK 500 9 SER A 2 140.37 -172.73 REMARK 500 9 MET A 8 -74.92 -53.53 REMARK 500 9 TRP A 17 157.02 -44.17 REMARK 500 9 PRO A 19 96.73 -69.74 REMARK 500 9 ASN A 24 153.02 -37.15 REMARK 500 9 ILE A 43 89.97 -48.27 REMARK 500 9 THR A 50 -31.32 -131.06 REMARK 500 9 LEU A 56 49.30 -77.75 REMARK 500 9 TYR A 57 -37.35 -35.98 REMARK 500 9 GLU A 74 -178.00 -63.09 REMARK 500 9 ARG A 82 33.62 -98.62 REMARK 500 10 SER A 6 51.21 39.17 REMARK 500 10 MET A 8 -75.45 -57.36 REMARK 500 10 PRO A 19 94.48 -69.78 REMARK 500 10 ASP A 25 50.42 70.08 REMARK 500 10 GLN A 33 -74.40 -75.35 REMARK 500 10 ILE A 43 92.46 -52.92 REMARK 500 10 ILE A 44 -70.02 -71.25 REMARK 500 10 VAL A 47 -71.08 -78.43 REMARK 500 10 LEU A 56 46.59 -79.76 REMARK 500 10 TYR A 57 -36.22 -35.26 REMARK 500 11 MET A 8 -75.43 -36.80 REMARK 500 11 PRO A 19 96.50 -69.72 REMARK 500 11 ILE A 43 91.61 -47.42 REMARK 500 11 LEU A 56 49.86 -78.43 REMARK 500 11 TYR A 57 -35.52 -36.84 REMARK 500 11 VAL A 67 -19.33 -49.39 REMARK 500 11 LEU A 73 96.69 -67.28 REMARK 500 11 ARG A 82 136.93 -34.83 REMARK 500 11 LEU A 83 127.72 -36.11 REMARK 500 11 SER A 84 41.33 -107.16 REMARK 500 12 MET A 8 -71.75 -61.61 REMARK 500 12 TRP A 17 130.33 -37.29 REMARK 500 12 PRO A 19 91.42 -69.74 REMARK 500 12 ILE A 43 96.53 -46.24 REMARK 500 12 LEU A 56 47.84 -77.32 REMARK 500 12 TYR A 57 -38.90 -34.33 REMARK 500 12 THR A 79 52.00 -92.29 REMARK 500 13 MET A 8 -72.64 -66.91 REMARK 500 13 TRP A 17 168.14 -47.80 REMARK 500 13 ILE A 43 91.81 -44.24 REMARK 500 13 LEU A 56 48.97 -75.74 REMARK 500 13 TYR A 57 -30.39 -36.24 REMARK 500 14 MET A 8 -75.34 -36.36 REMARK 500 14 LYS A 21 93.30 -60.52 REMARK 500 14 ILE A 43 88.33 -52.57 REMARK 500 14 LEU A 56 46.75 -78.31 REMARK 500 14 TYR A 57 -36.81 -33.95 REMARK 500 14 LEU A 73 97.38 -67.50 REMARK 500 15 MET A 8 -74.66 -61.99 REMARK 500 15 SER A 15 -176.77 -68.52 REMARK 500 15 TRP A 17 152.60 -39.93 REMARK 500 15 ILE A 43 91.01 -45.50 REMARK 500 15 LEU A 56 49.26 -78.61 REMARK 500 15 TYR A 57 -34.94 -36.14 REMARK 500 16 SER A 6 112.82 -161.68 REMARK 500 16 MET A 8 -75.42 -49.98 REMARK 500 16 PRO A 19 97.81 -69.72 REMARK 500 16 ASP A 25 53.73 35.93 REMARK 500 16 ILE A 43 93.27 -42.56 REMARK 500 16 LEU A 56 47.76 -76.94 REMARK 500 16 TYR A 57 -35.26 -35.72 REMARK 500 17 SER A 5 -56.44 -129.92 REMARK 500 17 MET A 8 -75.43 -35.52 REMARK 500 17 PRO A 19 96.93 -69.79 REMARK 500 17 ILE A 43 89.42 -49.96 REMARK 500 17 LEU A 56 47.75 -76.92 REMARK 500 17 TYR A 57 -34.68 -35.69 REMARK 500 17 LEU A 73 94.39 -62.80 REMARK 500 17 LYS A 78 -72.47 -62.42 REMARK 500 17 MET A 80 79.09 -114.80 REMARK 500 18 SER A 5 132.40 -35.63 REMARK 500 18 MET A 8 -75.41 -59.55 REMARK 500 18 SER A 15 177.81 -59.65 REMARK 500 18 PRO A 19 98.30 -69.76 REMARK 500 18 GLN A 33 -75.23 -75.19 REMARK 500 18 ILE A 43 91.53 -47.77 REMARK 500 18 VAL A 47 -70.15 -81.85 REMARK 500 18 LEU A 56 48.64 -76.21 REMARK 500 18 TYR A 57 -29.09 -37.02 REMARK 500 18 THR A 79 33.14 -84.22 REMARK 500 19 MET A 8 -75.42 -34.92 REMARK 500 19 TRP A 17 158.98 -46.75 REMARK 500 19 ILE A 43 93.76 -45.04 REMARK 500 19 VAL A 47 -64.64 -90.52 REMARK 500 19 LEU A 56 48.91 -75.72 REMARK 500 19 TYR A 57 -34.19 -33.89 REMARK 500 19 THR A 79 43.61 -100.12 REMARK 500 20 SER A 6 -70.11 -71.26 REMARK 500 20 MET A 8 -75.42 -35.05 REMARK 500 20 PRO A 19 95.85 -69.78 REMARK 500 20 ILE A 43 91.19 -45.50 REMARK 500 20 LEU A 56 48.54 -76.04 REMARK 500 20 TYR A 57 -36.00 -34.61 REMARK 500 REMARK 500 REMARK: NULL
REMARK 650 REMARK 650 HELIX REMARK 650 DETERMINATION METHOD: AUTHOR DETERMINED
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSB001011045.1 RELATED DB: TARGETDB
DBREF 2EQK A 8 85 UNP Q9NUY9 TDRD4_HUMAN 1 78
SEQADV 2EQK GLY A 1 UNP Q9NUY9 EXPRESSION TAG SEQADV 2EQK SER A 2 UNP Q9NUY9 EXPRESSION TAG SEQADV 2EQK SER A 3 UNP Q9NUY9 EXPRESSION TAG SEQADV 2EQK GLY A 4 UNP Q9NUY9 EXPRESSION TAG SEQADV 2EQK SER A 5 UNP Q9NUY9 EXPRESSION TAG SEQADV 2EQK SER A 6 UNP Q9NUY9 EXPRESSION TAG SEQADV 2EQK GLY A 7 UNP Q9NUY9 EXPRESSION TAG
SEQRES 1 A 85 GLY SER SER GLY SER SER GLY MET ILE ALA ALA TYR GLU SEQRES 2 A 85 ASN SER LYS TRP GLU PRO VAL LYS TRP GLU ASN ASP MET SEQRES 3 A 85 HIS CYS ALA VAL LYS ILE GLN ASP LYS ASN GLN TRP ARG SEQRES 4 A 85 ARG GLY GLN ILE ILE ARG MET VAL THR ASP THR LEU VAL SEQRES 5 A 85 GLU VAL LEU LEU TYR ASP VAL GLY VAL GLU LEU VAL VAL SEQRES 6 A 85 ASN VAL ASP CYS LEU ARG LYS LEU GLU GLU ASN LEU LYS SEQRES 7 A 85 THR MET GLY ARG LEU SER LEU
HELIX 1 1 MET A 8 ASN A 14 1 7 HELIX 2 2 GLU A 75 LYS A 78 1 4
SHEET 1 A 5 GLU A 62 ASN A 66 0 SHEET 2 A 5 LEU A 51 LEU A 55 -1 N VAL A 52 O VAL A 65 SHEET 3 A 5 TRP A 38 MET A 46 -1 N ARG A 45 O GLU A 53 SHEET 4 A 5 HIS A 27 LYS A 31 -1 N VAL A 30 O ARG A 39 SHEET 5 A 5 LEU A 70 LYS A 72 -1 O ARG A 71 N ALA A 29
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000