10 20 30 40 50 60 70 80 2EPZ - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER TRANSCRIPTION 30-MAR-07 2EPZ
TITLE SOLUTION STRUCTURE OF THE 4TH C2H2 TYPE ZINC FINGER DOMAIN TITLE 2 OF ZINC FINGER PROTEIN 28 HOMOLOG
COMPND MOL_ID: 1; COMPND 2 MOLECULE: ZINC FINGER PROTEIN 28 HOMOLOG; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: ZINC FINGER DOMAIN, UNP RESIDUES 500-532; COMPND 5 SYNONYM: ZFP-28, KRUEPPEL-LIKE ZINC FINGER FACTOR X6; COMPND 6 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ZFP28, KIAA1431; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P061225-30; SOURCE 8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS
KEYWDS C2H2, ZINC FINGER DOMAIN, STRUCTURAL GENOMICS, NPPSFA, KEYWDS 2 NATIONAL PROJECT ON PROTEIN STRUCTURAL AND FUNCTIONAL KEYWDS 3 ANALYSES, RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, KEYWDS 4 RSGI, TRANSCRIPTION
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR K.FUTAMI,S.SUZUKI,Y.MUTO,M.INOUE,T.KIGAWA,T.TERADA, AUTHOR 2 M.SHIROUZU,S.YOKOYAMA,RIKEN STRUCTURAL GENOMICS/PROTEOMICS AUTHOR 3 INITIATIVE (RSGI)
REVDAT 2 24-FEB-09 2EPZ 1 VERSN REVDAT 1 02-OCT-07 2EPZ 0
JRNL AUTH K.FUTAMI,S.SUZUKI,Y.MUTO,M.INOUE,T.KIGAWA,T.TERADA, JRNL AUTH 2 M.SHIROUZU,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE 4TH C2H2 TYPE ZINC JRNL TITL 2 FINGER DOMAIN OF ZINC FINGER PROTEIN 28 HOMOLOG JRNL REF TO BE PUBLISHED JRNL REFN
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 2.1 REMARK 3 AUTHORS : GUNTERT, P. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 2EPZ COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 13-JUN-07. REMARK 100 THE RCSB ID CODE IS RCSB026964.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 20MM D-TRIS-HCL(PH7.0); 100MM REMARK 210 NACL; 1MM D-DTT; 0.02% NAN3; REMARK 210 0.05MM ZNCL2+1MM IDA; 90% H2O, REMARK 210 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY, 3D_ REMARK 210 13C-SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR 3.5, NMRPIPE REMARK 210 20060702, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.9820, CYANA 2.1 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS, REMARK 210 SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS, REMARK 210 STRUCTURES WITH THE LOWEST REMARK 210 ENERGY, TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 PHE A 505 76.63 -104.98 REMARK 500 2 PHE A 505 76.26 -105.36 REMARK 500 2 LYS A 531 160.71 63.04 REMARK 500 3 PHE A 505 76.26 -103.22 REMARK 500 3 PRO A 532 -171.73 -69.78 REMARK 500 4 PHE A 505 76.95 -104.69 REMARK 500 4 PRO A 535 95.07 -69.77 REMARK 500 5 PHE A 505 76.83 -106.00 REMARK 500 5 GLU A 530 -177.03 -64.98 REMARK 500 6 PHE A 505 75.21 -103.77 REMARK 500 7 SER A 494 58.25 -90.22 REMARK 500 7 THR A 500 32.30 -98.70 REMARK 500 7 PHE A 505 75.18 -103.94 REMARK 500 7 LYS A 531 160.68 63.07 REMARK 500 7 PRO A 535 81.49 -69.72 REMARK 500 8 SER A 497 77.79 -106.20 REMARK 500 8 PHE A 505 75.47 -104.58 REMARK 500 8 PRO A 532 89.50 -69.74 REMARK 500 8 PRO A 535 -174.41 -69.74 REMARK 500 9 SER A 497 77.05 -115.09 REMARK 500 9 PHE A 505 75.93 -104.30 REMARK 500 10 GLU A 502 -177.86 -59.89 REMARK 500 10 PHE A 505 76.84 -104.99 REMARK 500 11 PHE A 505 75.60 -104.74 REMARK 500 11 SER A 533 -72.45 -97.98 REMARK 500 12 SER A 494 94.46 -66.01 REMARK 500 12 THR A 500 74.15 -104.26 REMARK 500 12 PHE A 505 76.34 -103.76 REMARK 500 13 LYS A 503 75.04 -153.46 REMARK 500 13 PHE A 505 76.94 -102.41 REMARK 500 13 SER A 536 148.59 -172.89 REMARK 500 14 SER A 495 108.28 -54.88 REMARK 500 14 THR A 500 -51.25 -129.41 REMARK 500 14 PHE A 505 76.42 -101.79 REMARK 500 14 ASP A 516 134.91 -178.18 REMARK 500 15 PHE A 505 77.38 -104.71 REMARK 500 15 ASP A 516 133.94 -171.49 REMARK 500 15 LYS A 531 160.67 63.02 REMARK 500 16 SER A 494 98.82 -67.36 REMARK 500 16 PHE A 505 77.58 -103.96 REMARK 500 16 ASP A 516 135.31 -175.32 REMARK 500 16 PRO A 532 83.42 -69.80 REMARK 500 16 PRO A 535 -174.64 -69.80 REMARK 500 17 PHE A 505 75.34 -103.12 REMARK 500 18 SER A 497 128.80 -172.64 REMARK 500 18 PHE A 505 75.70 -102.27 REMARK 500 18 ASP A 516 131.87 -176.09 REMARK 500 19 GLU A 502 -177.98 -59.75 REMARK 500 19 PHE A 505 75.56 -105.18 REMARK 500 19 PRO A 535 94.37 -69.75 REMARK 500 20 SER A 495 141.68 -170.35 REMARK 500 20 PHE A 505 76.36 -103.88 REMARK 500 20 SER A 536 64.90 -100.05 REMARK 500 REMARK 500 REMARK: NULL
REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 1 ZN A 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 507 SG REMARK 620 2 CYS A 510 SG 103.5 REMARK 620 3 HIS A 523 NE2 111.9 101.4 REMARK 620 4 HIS A 527 NE2 104.6 116.7 118.1 REMARK 620 N 1 2 3
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSO003011815.9 RELATED DB: TARGETDB
DBREF 2EPZ A 500 532 UNP Q8NHY6 ZFP28_HUMAN 500 532
SEQADV 2EPZ GLY A 493 UNP Q8NHY6 EXPRESSION TAG SEQADV 2EPZ SER A 494 UNP Q8NHY6 EXPRESSION TAG SEQADV 2EPZ SER A 495 UNP Q8NHY6 EXPRESSION TAG SEQADV 2EPZ GLY A 496 UNP Q8NHY6 EXPRESSION TAG SEQADV 2EPZ SER A 497 UNP Q8NHY6 EXPRESSION TAG SEQADV 2EPZ SER A 498 UNP Q8NHY6 EXPRESSION TAG SEQADV 2EPZ GLY A 499 UNP Q8NHY6 EXPRESSION TAG SEQADV 2EPZ SER A 533 UNP Q8NHY6 EXPRESSION TAG SEQADV 2EPZ GLY A 534 UNP Q8NHY6 EXPRESSION TAG SEQADV 2EPZ PRO A 535 UNP Q8NHY6 EXPRESSION TAG SEQADV 2EPZ SER A 536 UNP Q8NHY6 EXPRESSION TAG SEQADV 2EPZ SER A 537 UNP Q8NHY6 EXPRESSION TAG SEQADV 2EPZ GLY A 538 UNP Q8NHY6 EXPRESSION TAG
SEQRES 1 A 46 GLY SER SER GLY SER SER GLY THR GLY GLU LYS PRO PHE SEQRES 2 A 46 ASP CYS ILE ASP CYS GLY LYS ALA PHE SER ASP HIS ILE SEQRES 3 A 46 GLY LEU ASN GLN HIS ARG ARG ILE HIS THR GLY GLU LYS SEQRES 4 A 46 PRO SER GLY PRO SER SER GLY
HET ZN A 201 1
HETNAM ZN ZINC ION
FORMUL 2 ZN ZN 2+
HELIX 1 1 ASP A 516 ARG A 525 1 10
LINK SG CYS A 507 ZN ZN A 201 1555 1555 2.39 LINK SG CYS A 510 ZN ZN A 201 1555 1555 2.19 LINK NE2 HIS A 523 ZN ZN A 201 1555 1555 2.10 LINK NE2 HIS A 527 ZN ZN A 201 1555 1555 2.10
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000