10 20 30 40 50 60 70 80 2EP4 - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER PROTEIN BINDING 29-MAR-07 2EP4
TITLE SOLUTION STRUCTURE OF RING FINGER FROM HUMAN RING FINGER TITLE 2 PROTEIN 24
COMPND MOL_ID: 1; COMPND 2 MOLECULE: RING FINGER PROTEIN 24; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: ZF-C3HC4; COMPND 5 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: RNF24; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P060828-23; SOURCE 8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS
KEYWDS ZINC BINDING, UBIQUITIN, E3 ENZYME, STRUCTURAL GENOMICS, KEYWDS 2 NPPSFA, NATIONAL PROJECT ON PROTEIN STRUCTURAL AND KEYWDS 3 FUNCTIONAL ANALYSES, RIKEN STRUCTURAL GENOMICS/PROTEOMICS KEYWDS 4 INITIATIVE, RSGI, PROTEIN BINDING
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR T.NAGASHIMA,F.HAYASHI,S.YOKOYAMA,RIKEN STRUCTURAL AUTHOR 2 GENOMICS/PROTEOMICS INITIATIVE (RSGI)
REVDAT 2 24-FEB-09 2EP4 1 VERSN REVDAT 1 02-OCT-07 2EP4 0
JRNL AUTH T.NAGASHIMA,F.HAYASHI,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF RING FINGER FROM HUMAN RING JRNL TITL 2 FINGER PROTEIN 24 JRNL REF TO BE PUBLISHED JRNL REFN
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 2.0.17 REMARK 3 AUTHORS : GUNTERT, P. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 2EP4 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 07-JUN-07. REMARK 100 THE RCSB ID CODE IS RCSB026933.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 20 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.13MM UNIFORMLY 13C, 15N- REMARK 210 LABELED PROTEIN; 20MM TRISHCL, REMARK 210 100MM NACL, 1MM DTT, 0.02% REMARK 210 NAN3, 0.05MM ZNCL2, 1MM IDA; REMARK 210 10% D2O, 90% H2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY, 3D_ REMARK 210 15N-SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 900 MHZ, 800 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : VNMR 6.1C, NMRPIPE 20020425, REMARK 210 NMRVIEW 5.0.4, KUJIRA 0.9822, REMARK 210 CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS, TARGET REMARK 210 FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 65 105.60 -45.87 REMARK 500 1 LEU A 72 129.48 -34.57 REMARK 500 1 CYS A 78 164.22 -42.50 REMARK 500 1 PRO A 95 3.51 -69.82 REMARK 500 1 LYS A 113 48.45 -75.90 REMARK 500 1 PRO A 116 4.43 -69.79 REMARK 500 1 LEU A 117 -71.16 -110.87 REMARK 500 1 ASN A 119 43.10 73.06 REMARK 500 1 PRO A 131 7.99 -69.70 REMARK 500 2 GLU A 76 97.49 -67.06 REMARK 500 2 PRO A 95 6.09 -69.82 REMARK 500 2 LYS A 113 47.61 -76.70 REMARK 500 2 PRO A 116 4.62 -69.75 REMARK 500 2 LEU A 117 -71.16 -113.86 REMARK 500 2 ASN A 119 47.90 71.11 REMARK 500 2 LEU A 123 -58.04 -132.46 REMARK 500 2 PRO A 131 -177.30 -69.74 REMARK 500 2 SER A 132 159.71 -46.79 REMARK 500 3 LEU A 72 165.46 -47.18 REMARK 500 3 HIS A 75 98.96 -54.40 REMARK 500 3 LEU A 82 55.00 32.39 REMARK 500 3 PRO A 95 4.07 -69.80 REMARK 500 3 ARG A 102 -36.62 -38.68 REMARK 500 3 LYS A 113 47.79 -76.14 REMARK 500 3 PRO A 116 6.43 -69.77 REMARK 500 3 ALA A 126 45.44 -77.74 REMARK 500 4 ASN A 73 115.17 -160.98 REMARK 500 4 LEU A 74 175.47 -55.26 REMARK 500 4 GLU A 76 40.56 -84.89 REMARK 500 4 PRO A 95 3.45 -69.71 REMARK 500 4 ARG A 102 -37.68 -38.58 REMARK 500 4 LYS A 113 45.28 -82.81 REMARK 500 4 PRO A 116 10.56 -69.72 REMARK 500 4 LEU A 117 -67.75 -120.56 REMARK 500 4 LEU A 125 42.90 -82.62 REMARK 500 5 LYS A 70 45.29 37.24 REMARK 500 5 LEU A 74 -63.43 -102.06 REMARK 500 5 GLU A 76 108.63 -31.61 REMARK 500 5 ASP A 84 130.60 -36.88 REMARK 500 5 PRO A 95 5.11 -69.78 REMARK 500 5 LYS A 113 48.77 -75.64 REMARK 500 5 PRO A 116 5.71 -69.74 REMARK 500 5 LEU A 117 -70.80 -111.39 REMARK 500 5 LEU A 123 54.63 32.13 REMARK 500 5 GLN A 124 45.54 -79.08 REMARK 500 5 PRO A 131 3.98 -69.72 REMARK 500 6 SER A 65 114.66 -168.87 REMARK 500 6 GLU A 71 44.02 -103.98 REMARK 500 6 ASP A 84 141.11 -35.67 REMARK 500 6 PRO A 95 4.29 -69.70 REMARK 500 6 ARG A 102 -34.24 -38.39 REMARK 500 6 LYS A 113 46.42 -78.22 REMARK 500 6 PRO A 116 6.10 -69.77 REMARK 500 6 GLN A 124 154.02 -42.02 REMARK 500 6 LEU A 125 128.35 -35.01 REMARK 500 6 GLN A 127 145.57 -36.65 REMARK 500 7 GLU A 71 49.60 33.61 REMARK 500 7 LEU A 72 41.89 -109.90 REMARK 500 7 PRO A 95 4.19 -69.74 REMARK 500 7 LYS A 113 46.10 -84.21 REMARK 500 7 PRO A 116 5.95 -69.77 REMARK 500 7 ASN A 119 38.56 74.59 REMARK 500 7 LEU A 123 40.64 -101.78 REMARK 500 8 SER A 66 152.23 -46.69 REMARK 500 8 LEU A 72 41.74 39.92 REMARK 500 8 GLU A 76 41.22 -97.18 REMARK 500 8 PRO A 95 3.21 -69.77 REMARK 500 8 ARG A 102 -38.79 -39.78 REMARK 500 8 LYS A 113 39.87 -81.70 REMARK 500 8 PRO A 116 8.66 -69.76 REMARK 500 8 PRO A 131 1.41 -69.69 REMARK 500 8 SER A 132 99.87 -33.99 REMARK 500 9 CYS A 78 164.96 -43.93 REMARK 500 9 LEU A 91 109.93 -37.51 REMARK 500 9 PRO A 95 4.48 -69.75 REMARK 500 9 LYS A 113 45.75 -79.23 REMARK 500 9 PRO A 116 7.27 -69.85 REMARK 500 9 GLN A 124 120.63 -174.03 REMARK 500 9 ALA A 126 42.01 36.03 REMARK 500 9 PRO A 131 1.41 -69.70 REMARK 500 9 SER A 133 42.09 -96.12 REMARK 500 10 LEU A 74 -59.87 -133.72 REMARK 500 10 CYS A 78 165.53 -44.93 REMARK 500 10 ASP A 84 127.50 -38.13 REMARK 500 10 PRO A 95 2.57 -69.81 REMARK 500 10 ARG A 102 -31.84 -37.09 REMARK 500 10 LYS A 113 39.05 -92.27 REMARK 500 10 PRO A 116 11.32 -69.82 REMARK 500 10 LEU A 117 -62.59 -121.82 REMARK 500 11 VAL A 69 163.90 -42.98 REMARK 500 11 CYS A 78 165.66 -43.89 REMARK 500 11 ASP A 84 123.10 -36.61 REMARK 500 11 PRO A 95 3.80 -69.72 REMARK 500 11 LYS A 113 46.17 -79.35 REMARK 500 11 PRO A 116 9.69 -69.75 REMARK 500 11 LEU A 117 -51.79 -124.00 REMARK 500 11 ASN A 119 41.48 38.61 REMARK 500 12 VAL A 69 121.42 -37.35 REMARK 500 12 HIS A 75 43.64 -80.37 REMARK 500 12 LEU A 82 55.02 36.91 REMARK 500 12 ASP A 84 171.98 -51.85 REMARK 500 12 GLU A 90 141.01 -35.91 REMARK 500 12 PRO A 95 3.40 -69.77 REMARK 500 12 LYS A 113 45.41 -76.85 REMARK 500 12 PRO A 116 7.35 -69.70 REMARK 500 12 PRO A 131 85.22 -69.78 REMARK 500 13 LEU A 82 54.50 37.12 REMARK 500 13 ASP A 84 169.33 -46.97 REMARK 500 13 GLU A 90 -177.12 -53.73 REMARK 500 13 PRO A 95 2.09 -69.76 REMARK 500 13 LYS A 113 47.56 -84.33 REMARK 500 13 PRO A 116 6.68 -69.77 REMARK 500 13 LEU A 117 -76.22 -124.53 REMARK 500 13 ALA A 126 50.63 -101.02 REMARK 500 14 VAL A 69 120.95 -35.78 REMARK 500 14 ASP A 84 145.40 -35.65 REMARK 500 14 GLU A 90 156.32 -44.07 REMARK 500 14 PRO A 95 3.56 -69.76 REMARK 500 14 ARG A 102 -38.64 -37.14 REMARK 500 14 PRO A 116 7.69 -69.84 REMARK 500 14 LEU A 123 52.54 32.93 REMARK 500 15 PRO A 95 1.68 -69.82 REMARK 500 15 ARG A 102 -39.22 -36.91 REMARK 500 15 LYS A 113 43.53 -81.02 REMARK 500 15 PRO A 116 12.78 -69.75 REMARK 500 15 LEU A 117 -57.40 -125.45 REMARK 500 15 ASN A 119 27.90 46.64 REMARK 500 15 GLN A 124 41.58 -91.92 REMARK 500 15 PRO A 131 3.32 -69.72 REMARK 500 16 LEU A 72 122.34 -174.83 REMARK 500 16 HIS A 75 103.05 -60.00 REMARK 500 16 GLU A 76 48.53 -107.92 REMARK 500 16 ASP A 84 112.41 -36.76 REMARK 500 16 PRO A 95 3.95 -69.75 REMARK 500 16 LYS A 113 36.54 -86.96 REMARK 500 16 PRO A 116 6.76 -69.80 REMARK 500 16 VAL A 122 90.48 -68.72 REMARK 500 16 PRO A 131 94.71 -69.76 REMARK 500 17 SER A 63 42.17 -87.60 REMARK 500 17 SER A 65 42.11 -101.94 REMARK 500 17 VAL A 69 40.85 37.16 REMARK 500 17 LYS A 70 41.93 -102.56 REMARK 500 17 PRO A 95 5.06 -69.76 REMARK 500 17 LYS A 113 42.87 -80.98 REMARK 500 17 PRO A 116 9.83 -69.76 REMARK 500 17 LEU A 117 -57.87 -127.98 REMARK 500 17 ASN A 119 52.78 32.03 REMARK 500 17 LEU A 123 54.98 74.02 REMARK 500 17 GLN A 124 45.80 -79.43 REMARK 500 17 PRO A 131 2.29 -69.75 REMARK 500 18 SER A 66 90.37 -58.50 REMARK 500 18 PRO A 95 3.37 -69.77 REMARK 500 18 ARG A 102 -31.33 -37.24 REMARK 500 18 LYS A 113 37.52 -81.34 REMARK 500 18 PRO A 116 7.73 -69.73 REMARK 500 18 ASN A 119 38.68 74.87 REMARK 500 18 LEU A 125 111.38 -173.67 REMARK 500 18 ALA A 126 39.73 37.34 REMARK 500 18 SER A 129 165.21 -45.52 REMARK 500 19 SER A 66 176.68 -58.45 REMARK 500 19 LYS A 70 93.20 -59.64 REMARK 500 19 LEU A 91 101.44 -34.00 REMARK 500 19 PRO A 95 3.21 -69.78 REMARK 500 19 LYS A 113 43.83 -88.73 REMARK 500 19 PRO A 116 6.59 -69.78 REMARK 500 19 LEU A 117 -72.22 -114.77 REMARK 500 19 PRO A 131 3.52 -69.75 REMARK 500 20 GLU A 76 96.96 -68.64 REMARK 500 20 CYS A 78 164.81 -47.69 REMARK 500 20 GLU A 90 160.93 -48.14 REMARK 500 20 PRO A 95 3.50 -69.80 REMARK 500 20 LYS A 113 35.43 -83.23 REMARK 500 20 PRO A 116 9.04 -69.71 REMARK 500 20 LEU A 117 -52.64 -125.80 REMARK 500 20 ASN A 119 52.14 33.22 REMARK 500 REMARK 500 REMARK: NULL
REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 1 ZN A 200 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 78 SG REMARK 620 2 CYS A 81 SG 104.9 REMARK 620 3 HIS A 101 ND1 105.6 105.4 REMARK 620 4 CYS A 104 SG 114.1 106.9 118.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 1 ZN A 300 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 96 SG REMARK 620 2 HIS A 98 ND1 108.7 REMARK 620 3 CYS A 115 SG 101.9 109.0 REMARK 620 4 CYS A 118 SG 105.2 123.8 106.1 REMARK 620 N 1 2 3
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSI002003774.1 RELATED DB: TARGETDB
DBREF 2EP4 A 68 128 UNP Q9Y225 RNF24_HUMAN 68 128
SEQADV 2EP4 GLY A 61 UNP Q9Y225 EXPRESSION TAG SEQADV 2EP4 SER A 62 UNP Q9Y225 EXPRESSION TAG SEQADV 2EP4 SER A 63 UNP Q9Y225 EXPRESSION TAG SEQADV 2EP4 GLY A 64 UNP Q9Y225 EXPRESSION TAG SEQADV 2EP4 SER A 65 UNP Q9Y225 EXPRESSION TAG SEQADV 2EP4 SER A 66 UNP Q9Y225 EXPRESSION TAG SEQADV 2EP4 GLY A 67 UNP Q9Y225 EXPRESSION TAG SEQADV 2EP4 SER A 129 UNP Q9Y225 EXPRESSION TAG SEQADV 2EP4 GLY A 130 UNP Q9Y225 EXPRESSION TAG SEQADV 2EP4 PRO A 131 UNP Q9Y225 EXPRESSION TAG SEQADV 2EP4 SER A 132 UNP Q9Y225 EXPRESSION TAG SEQADV 2EP4 SER A 133 UNP Q9Y225 EXPRESSION TAG SEQADV 2EP4 GLY A 134 UNP Q9Y225 EXPRESSION TAG
SEQRES 1 A 74 GLY SER SER GLY SER SER GLY LYS VAL LYS GLU LEU ASN SEQRES 2 A 74 LEU HIS GLU LEU CYS ALA VAL CYS LEU GLU ASP PHE LYS SEQRES 3 A 74 PRO ARG ASP GLU LEU GLY ILE CYS PRO CYS LYS HIS ALA SEQRES 4 A 74 PHE HIS ARG LYS CYS LEU ILE LYS TRP LEU GLU VAL ARG SEQRES 5 A 74 LYS VAL CYS PRO LEU CYS ASN MET PRO VAL LEU GLN LEU SEQRES 6 A 74 ALA GLN LEU SER GLY PRO SER SER GLY
HET ZN A 200 1 HET ZN A 300 1
HETNAM ZN ZINC ION
FORMUL 2 ZN 2(ZN 2+)
HELIX 1 1 ARG A 102 ARG A 112 1 11
SHEET 1 A 2 LEU A 91 CYS A 94 0 SHEET 2 A 2 HIS A 98 HIS A 101 -1 O PHE A 100 N GLY A 92
LINK SG CYS A 78 ZN ZN A 200 1555 1555 2.34 LINK SG CYS A 81 ZN ZN A 200 1555 1555 2.35 LINK SG CYS A 96 ZN ZN A 300 1555 1555 2.36 LINK ND1 HIS A 98 ZN ZN A 300 1555 1555 1.96 LINK ND1 HIS A 101 ZN ZN A 200 1555 1555 2.05 LINK SG CYS A 104 ZN ZN A 200 1555 1555 2.25 LINK SG CYS A 115 ZN ZN A 300 1555 1555 2.35 LINK SG CYS A 118 ZN ZN A 300 1555 1555 2.24
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000