10 20 30 40 50 60 70 80 2EP3 - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER TRANSCRIPTION 29-MAR-07 2EP3
TITLE SOLUTION STRUCTURE OF THE C2H2 TYPE ZINC FINGER (REGION 631- TITLE 2 663) OF HUMAN ZINC FINGER PROTEIN 484
COMPND MOL_ID: 1; COMPND 2 MOLECULE: ZINC FINGER PROTEIN 484; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: ZF-C2H2, UNP RESIDUES 631-663; COMPND 5 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ZNF484; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P070115-47; SOURCE 8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS
KEYWDS ZF-C2H2, NMR, STRUCTURAL GENOMICS, NPPSFA, NATIONAL PROJECT KEYWDS 2 ON PROTEIN STRUCTURAL AND FUNCTIONAL ANALYSES, RIKEN KEYWDS 3 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI, KEYWDS 4 TRANSCRIPTION
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR N.TOCHIO,T.TOMIZAWA,H.ABE,K.SAITO,H.LI,M.SATO,S.KOSHIBA, AUTHOR 2 N.KOBAYASHI,T.KIGAWA,S.YOKOYAMA,RIKEN STRUCTURAL AUTHOR 3 GENOMICS/PROTEOMICS INITIATIVE (RSGI)
REVDAT 2 24-FEB-09 2EP3 1 VERSN REVDAT 1 02-OCT-07 2EP3 0
JRNL AUTH N.TOCHIO,T.TOMIZAWA,H.ABE,K.SAITO,H.LI,M.SATO, JRNL AUTH 2 S.KOSHIBA,N.KOBAYASHI,T.KIGAWA,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE C2H2 TYPE ZINC FINGER JRNL TITL 2 (REGION 631-663) OF HUMAN ZINC FINGER PROTEIN 484 JRNL REF TO BE PUBLISHED JRNL REFN
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 2.0.17 REMARK 3 AUTHORS : GUNTERT, P. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 2EP3 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 08-JUN-06. REMARK 100 THE RCSB ID CODE IS RCSB026932.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 296 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : ABOUT 1.0MM SAMPLE U-15N,13C; REMARK 210 20MM D-TRIS-HCL; 100MM NACL; REMARK 210 0.05MM ZNCL2; 1MM IDA; 1MM D- REMARK 210 DTT; 0.02% NAN3; 90% H2O, 10% REMARK 210 D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY, 3D_ REMARK 210 15N-SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR 3.5, NMRPIPE REMARK 210 20030801, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.9820, CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS, TARGET REMARK 210 FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 2 44.21 -83.23 REMARK 500 1 THR A 36 48.19 -86.08 REMARK 500 1 SER A 44 46.55 35.23 REMARK 500 2 SER A 5 42.22 34.52 REMARK 500 2 ALA A 16 30.73 -84.12 REMARK 500 2 HIS A 35 -67.76 -90.48 REMARK 500 2 PRO A 43 2.80 -69.75 REMARK 500 3 THR A 8 40.47 -98.80 REMARK 500 3 HIS A 35 31.47 -93.55 REMARK 500 3 THR A 36 136.12 -174.02 REMARK 500 3 LYS A 39 78.50 -116.26 REMARK 500 3 SER A 41 43.24 -85.05 REMARK 500 3 SER A 45 108.86 -40.25 REMARK 500 4 SER A 5 175.68 -58.16 REMARK 500 4 HIS A 35 -74.98 -80.56 REMARK 500 6 THR A 36 45.51 -85.49 REMARK 500 6 PRO A 43 87.02 -69.81 REMARK 500 7 SER A 5 42.23 -91.73 REMARK 500 7 SER A 6 42.28 -102.13 REMARK 500 7 ALA A 16 31.24 -84.00 REMARK 500 7 GLN A 32 -30.65 -35.95 REMARK 500 7 GLU A 38 43.89 34.89 REMARK 500 7 PRO A 40 -174.31 -69.78 REMARK 500 7 PRO A 43 86.61 -69.75 REMARK 500 7 SER A 45 144.45 -174.08 REMARK 500 8 ALA A 16 30.13 -89.54 REMARK 500 8 GLU A 17 -51.08 -129.82 REMARK 500 8 SER A 41 43.45 34.55 REMARK 500 8 PRO A 43 -172.18 -69.75 REMARK 500 8 SER A 45 145.30 -36.86 REMARK 500 9 GLN A 32 -18.11 -49.80 REMARK 500 9 PRO A 40 89.62 -69.68 REMARK 500 9 PRO A 43 85.78 -69.74 REMARK 500 10 SER A 5 43.18 39.58 REMARK 500 10 HIS A 35 -65.52 -96.93 REMARK 500 10 THR A 36 42.10 34.05 REMARK 500 10 SER A 41 114.29 -37.14 REMARK 500 11 THR A 36 91.96 -58.48 REMARK 500 11 SER A 44 44.32 -109.08 REMARK 500 12 GLU A 10 67.81 -106.47 REMARK 500 12 THR A 36 39.29 33.83 REMARK 500 12 PRO A 40 84.85 -69.74 REMARK 500 12 SER A 41 43.41 -107.94 REMARK 500 13 GLN A 32 -26.55 -38.57 REMARK 500 13 GLU A 38 40.65 -103.82 REMARK 500 14 SER A 5 41.54 -87.84 REMARK 500 14 SER A 6 104.98 -35.15 REMARK 500 14 ALA A 16 30.43 -84.10 REMARK 500 14 GLU A 17 -51.09 -126.76 REMARK 500 15 GLU A 17 -53.97 -125.19 REMARK 500 15 THR A 36 47.94 -91.74 REMARK 500 15 SER A 41 163.43 -43.31 REMARK 500 16 GLU A 17 -64.46 -90.41 REMARK 500 16 GLN A 32 -26.16 -38.86 REMARK 500 16 HIS A 35 -73.39 -95.87 REMARK 500 16 PRO A 40 84.94 -69.72 REMARK 500 17 HIS A 35 -75.03 -83.06 REMARK 500 17 GLU A 38 78.60 -112.04 REMARK 500 17 SER A 41 125.91 -174.04 REMARK 500 18 SER A 5 82.79 -67.39 REMARK 500 18 LYS A 11 138.98 -37.99 REMARK 500 18 ASP A 24 136.16 -172.27 REMARK 500 18 THR A 36 79.84 -102.10 REMARK 500 18 SER A 41 43.87 -90.55 REMARK 500 18 SER A 45 41.63 70.65 REMARK 500 19 SER A 5 43.79 -96.07 REMARK 500 19 SER A 6 41.99 -107.02 REMARK 500 19 GLN A 32 -29.59 -36.59 REMARK 500 19 GLU A 38 179.05 -52.96 REMARK 500 19 PRO A 40 0.70 -69.75 REMARK 500 19 PRO A 43 0.18 -69.66 REMARK 500 19 SER A 44 122.15 -35.37 REMARK 500 20 SER A 2 -60.41 -94.43 REMARK 500 20 SER A 5 102.86 -52.16 REMARK 500 20 GLN A 32 -19.86 -46.88 REMARK 500 20 PRO A 40 87.88 -69.76 REMARK 500 20 SER A 41 110.84 -167.23 REMARK 500 20 SER A 44 137.53 -34.85 REMARK 500 REMARK 500 REMARK: NULL
REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 1 ZN A 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 15 SG REMARK 620 2 CYS A 18 SG 116.3 REMARK 620 3 HIS A 31 NE2 112.4 109.0 REMARK 620 4 HIS A 35 NE2 109.4 110.6 97.4 REMARK 620 N 1 2 3
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSO003006001.8 RELATED DB: TARGETDB
DBREF 2EP3 A 8 40 UNP Q5JVG2 ZN484_HUMAN 631 663
SEQADV 2EP3 GLY A 1 UNP Q5JVG2 EXPRESSION TAG SEQADV 2EP3 SER A 2 UNP Q5JVG2 EXPRESSION TAG SEQADV 2EP3 SER A 3 UNP Q5JVG2 EXPRESSION TAG SEQADV 2EP3 GLY A 4 UNP Q5JVG2 EXPRESSION TAG SEQADV 2EP3 SER A 5 UNP Q5JVG2 EXPRESSION TAG SEQADV 2EP3 SER A 6 UNP Q5JVG2 EXPRESSION TAG SEQADV 2EP3 GLY A 7 UNP Q5JVG2 EXPRESSION TAG SEQADV 2EP3 SER A 41 UNP Q5JVG2 EXPRESSION TAG SEQADV 2EP3 GLY A 42 UNP Q5JVG2 EXPRESSION TAG SEQADV 2EP3 PRO A 43 UNP Q5JVG2 EXPRESSION TAG SEQADV 2EP3 SER A 44 UNP Q5JVG2 EXPRESSION TAG SEQADV 2EP3 SER A 45 UNP Q5JVG2 EXPRESSION TAG SEQADV 2EP3 GLY A 46 UNP Q5JVG2 EXPRESSION TAG
SEQRES 1 A 46 GLY SER SER GLY SER SER GLY THR GLY GLU LYS PRO TYR SEQRES 2 A 46 ARG CYS ALA GLU CYS GLY LYS ALA PHE THR ASP ARG SER SEQRES 3 A 46 ASN LEU PHE THR HIS GLN LYS ILE HIS THR GLY GLU LYS SEQRES 4 A 46 PRO SER GLY PRO SER SER GLY
HET ZN A 201 1
HETNAM ZN ZINC ION
FORMUL 2 ZN ZN 2+
HELIX 1 1 ASP A 24 LYS A 33 1 10
SHEET 1 A 2 TYR A 13 ARG A 14 0 SHEET 2 A 2 ALA A 21 PHE A 22 -1 O PHE A 22 N TYR A 13
LINK SG CYS A 15 ZN ZN A 201 1555 1555 2.38 LINK SG CYS A 18 ZN ZN A 201 1555 1555 2.20 LINK NE2 HIS A 31 ZN ZN A 201 1555 1555 2.07 LINK NE2 HIS A 35 ZN ZN A 201 1555 1555 2.10
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000