10 20 30 40 50 60 70 80 2ENO - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER ENDOCYTOSIS 28-MAR-07 2ENO
TITLE SOLUTION STRUCTURE OF THE PDZ DOMAIN FROM HUMAN TITLE 2 SYNAPTOJANIN 2 BINDING PROTEIN
COMPND MOL_ID: 1; COMPND 2 MOLECULE: SYNAPTOJANIN-2-BINDING PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: PDZ DOMAIN; COMPND 5 SYNONYM: MITOCHONDRIAL OUTER MEMBRANE PROTEIN 25; COMPND 6 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SYNJ2BP; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P050509-14; SOURCE 8 OTHER_DETAILS: CELL FREE PROTEIN SYNTHESIS
KEYWDS MITOCHONDRIAL OUTER MEMBRANE PROTEIN 25, STRUCTURAL KEYWDS 2 GENOMICS, NPPSFA, NATIONAL PROJECT ON PROTEIN STRUCTURAL KEYWDS 3 AND FUNCTIONAL ANALYSES, RIKEN STRUCTURAL KEYWDS 4 GENOMICS/PROTEOMICS INITIATIVE, RSGI, ENDOCYTOSIS
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR H.ENDO,M.YOSHIDA,F.HAYASHI,S.YOKOYAMA,RIKEN STRUCTURAL AUTHOR 2 GENOMICS/PROTEOMICS INITIATIVE (RSGI)
REVDAT 2 24-FEB-09 2ENO 1 VERSN REVDAT 1 02-OCT-07 2ENO 0
JRNL AUTH H.ENDO,M.YOSHIDA,F.HAYASHI,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE PDZ DOMAIN FROM HUMAN JRNL TITL 2 SYNAPTOJANIN 2 BINDING PROTEIN JRNL REF TO BE PUBLISHED JRNL REFN
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 2.0.17 REMARK 3 AUTHORS : GUNTERT, P. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 2ENO COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 31-MAY-07. REMARK 100 THE RCSB ID CODE IS RCSB026883.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.22MM 13C, 15N-LABELED REMARK 210 PROTEIN; 20MM D-TRIS-HCL(PH REMARK 210 7.0), 100MM NACL; 1MM D-DTT; REMARK 210 0.02% NAN3, 10% D2O; 90% H2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY, 3D_ REMARK 210 15N-SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : VNMR 6.1C, NMRPIPE 20060702, REMARK 210 NMRVIEW 5.0.4, KUJIRA 0.9820, REMARK 210 CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS, TARGET REMARK 210 FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 PHE A 32 144.78 -172.88 REMARK 500 1 GLN A 41 100.89 -37.46 REMARK 500 1 TYR A 42 -25.47 -39.78 REMARK 500 1 ARG A 65 -73.53 -39.60 REMARK 500 1 ILE A 72 95.95 -62.69 REMARK 500 1 ALA A 95 -73.77 -37.04 REMARK 500 1 GLN A 110 84.13 -67.02 REMARK 500 2 VAL A 12 51.07 -98.10 REMARK 500 2 TYR A 14 126.04 -39.16 REMARK 500 2 LEU A 30 -72.05 -127.89 REMARK 500 2 GLN A 41 109.16 -42.86 REMARK 500 2 TYR A 42 -18.62 -49.43 REMARK 500 2 ASN A 57 43.62 -107.16 REMARK 500 2 ARG A 65 -62.04 -92.54 REMARK 500 2 GLU A 68 161.37 -43.25 REMARK 500 2 ASN A 82 43.04 34.41 REMARK 500 2 TYR A 97 -70.47 -39.20 REMARK 500 2 ASN A 111 109.44 -162.16 REMARK 500 3 SER A 6 135.32 -39.68 REMARK 500 3 VAL A 12 40.32 37.79 REMARK 500 3 SER A 28 -55.34 -125.39 REMARK 500 3 TYR A 42 -36.16 -39.73 REMARK 500 3 ASP A 46 76.92 -117.66 REMARK 500 3 TYR A 97 -72.17 -37.65 REMARK 500 4 SER A 3 166.10 -49.31 REMARK 500 4 TYR A 14 131.95 -172.91 REMARK 500 4 TYR A 42 -28.97 -37.95 REMARK 500 4 ASP A 46 72.06 -102.47 REMARK 500 4 LYS A 55 152.20 -48.97 REMARK 500 4 TYR A 97 -71.00 -48.29 REMARK 500 4 GLN A 108 139.63 -36.28 REMARK 500 5 MET A 8 163.94 -42.43 REMARK 500 5 ILE A 72 93.13 -62.31 REMARK 500 5 ASN A 82 54.96 39.17 REMARK 500 5 SER A 115 112.20 -173.97 REMARK 500 5 SER A 118 110.34 -35.34 REMARK 500 6 TYR A 14 119.74 -34.65 REMARK 500 6 LEU A 30 -64.61 -128.58 REMARK 500 6 PHE A 32 142.43 -172.21 REMARK 500 6 THR A 38 -29.36 -38.03 REMARK 500 6 ASN A 57 41.86 -108.63 REMARK 500 6 ILE A 72 96.84 -66.80 REMARK 500 7 ASN A 9 50.85 34.80 REMARK 500 7 LEU A 30 -179.96 -62.78 REMARK 500 7 PHE A 32 141.27 -170.72 REMARK 500 7 GLN A 41 105.42 -34.39 REMARK 500 7 ILE A 72 95.96 -58.85 REMARK 500 7 SER A 119 116.60 -169.39 REMARK 500 8 SER A 6 101.69 -43.43 REMARK 500 8 LEU A 30 -178.48 -54.69 REMARK 500 8 PHE A 32 146.04 -172.45 REMARK 500 8 ILE A 72 99.64 -62.14 REMARK 500 8 GLN A 108 158.45 -44.08 REMARK 500 8 SER A 119 109.18 -35.77 REMARK 500 9 VAL A 12 42.55 -94.62 REMARK 500 9 ALA A 95 -72.52 -42.53 REMARK 500 10 PHE A 32 148.40 -173.02 REMARK 500 10 TYR A 42 -36.92 -39.28 REMARK 500 10 SER A 47 45.33 -98.28 REMARK 500 10 ASN A 57 41.13 -102.73 REMARK 500 10 GLU A 68 157.21 -47.95 REMARK 500 10 ILE A 72 91.86 -59.30 REMARK 500 10 GLN A 110 -63.11 -92.27 REMARK 500 10 PRO A 113 2.02 -69.75 REMARK 500 10 ILE A 114 149.50 -34.03 REMARK 500 10 SER A 115 131.10 -34.52 REMARK 500 11 VAL A 12 42.99 -109.36 REMARK 500 11 LEU A 30 -68.50 -124.91 REMARK 500 11 PHE A 32 142.95 -171.29 REMARK 500 11 LYS A 55 163.07 -49.25 REMARK 500 11 ILE A 72 95.26 -65.64 REMARK 500 12 LYS A 55 105.78 -48.61 REMARK 500 12 ASN A 57 53.87 -113.90 REMARK 500 12 GLN A 78 -173.58 -67.42 REMARK 500 12 ALA A 95 -72.87 -36.53 REMARK 500 12 GLN A 108 154.26 -43.59 REMARK 500 13 VAL A 12 76.50 -61.82 REMARK 500 13 LEU A 30 -72.40 -112.49 REMARK 500 13 PHE A 32 146.46 -170.98 REMARK 500 13 GLN A 41 119.45 -36.91 REMARK 500 13 ASN A 57 37.21 -94.84 REMARK 500 13 ILE A 72 95.80 -67.56 REMARK 500 13 ASN A 111 -70.26 -83.09 REMARK 500 13 PRO A 117 95.05 -69.72 REMARK 500 14 SER A 2 42.45 -93.94 REMARK 500 14 THR A 38 -25.99 -38.79 REMARK 500 14 ARG A 65 -33.10 -34.36 REMARK 500 14 ILE A 72 94.80 -68.07 REMARK 500 14 PRO A 113 1.20 -69.78 REMARK 500 14 ILE A 114 144.37 -34.09 REMARK 500 14 SER A 118 52.19 34.75 REMARK 500 15 MET A 8 44.58 -83.03 REMARK 500 15 ASN A 9 175.13 -58.89 REMARK 500 15 ARG A 11 173.79 -47.89 REMARK 500 15 SER A 47 40.47 -94.88 REMARK 500 15 GLU A 68 150.45 -44.06 REMARK 500 15 ILE A 72 89.78 -60.55 REMARK 500 15 ASN A 76 26.51 46.49 REMARK 500 15 GLN A 78 99.53 -68.90 REMARK 500 15 GLN A 110 56.91 -108.41 REMARK 500 15 ASN A 111 48.34 -94.37 REMARK 500 16 SER A 6 -68.51 -91.04 REMARK 500 16 PHE A 32 142.78 -172.86 REMARK 500 16 GLN A 41 107.69 -37.86 REMARK 500 16 TYR A 42 -39.41 -36.47 REMARK 500 16 LYS A 55 165.21 -49.90 REMARK 500 16 GLU A 68 162.55 -41.57 REMARK 500 16 ILE A 72 97.09 -69.36 REMARK 500 16 LYS A 81 134.69 -171.67 REMARK 500 16 ASN A 82 44.39 70.65 REMARK 500 16 TYR A 97 -70.19 -46.44 REMARK 500 17 MET A 8 36.76 36.88 REMARK 500 17 VAL A 12 34.47 39.94 REMARK 500 17 LEU A 30 -74.96 -87.70 REMARK 500 17 GLN A 41 115.41 -34.43 REMARK 500 17 ASN A 57 43.38 -109.43 REMARK 500 17 ARG A 65 -70.48 -70.92 REMARK 500 17 ILE A 72 90.78 -63.80 REMARK 500 17 PRO A 113 -172.59 -69.76 REMARK 500 18 SER A 3 100.51 -49.81 REMARK 500 18 SER A 5 112.91 -35.41 REMARK 500 18 ASN A 9 117.73 -166.38 REMARK 500 18 TYR A 14 135.60 -172.75 REMARK 500 18 PHE A 32 144.21 -170.78 REMARK 500 18 LYS A 55 151.10 -49.92 REMARK 500 18 ILE A 72 94.91 -63.39 REMARK 500 18 PRO A 117 92.24 -69.79 REMARK 500 19 TYR A 14 130.05 -35.06 REMARK 500 19 LEU A 30 -73.19 -105.27 REMARK 500 19 THR A 38 -31.52 -39.66 REMARK 500 19 GLN A 41 104.89 -56.61 REMARK 500 19 ASN A 57 41.59 -99.04 REMARK 500 19 ARG A 65 -73.46 -60.32 REMARK 500 19 ILE A 72 98.59 -67.98 REMARK 500 19 GLN A 78 -174.17 -51.79 REMARK 500 19 SER A 118 140.41 -36.53 REMARK 500 19 SER A 119 -175.06 -57.57 REMARK 500 20 SER A 6 162.26 -49.44 REMARK 500 20 VAL A 12 100.33 -38.32 REMARK 500 20 LEU A 30 -74.11 -95.25 REMARK 500 20 ILE A 72 96.72 -62.43 REMARK 500 20 VAL A 109 143.43 -34.68 REMARK 500 REMARK 500 REMARK: NULL
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSI002006307.1 RELATED DB: TARGETDB
DBREF 2ENO A 8 114 UNP P57105 SYJ2B_HUMAN 1 107
SEQADV 2ENO GLY A 1 UNP P57105 EXPRESSION TAG SEQADV 2ENO SER A 2 UNP P57105 EXPRESSION TAG SEQADV 2ENO SER A 3 UNP P57105 EXPRESSION TAG SEQADV 2ENO GLY A 4 UNP P57105 EXPRESSION TAG SEQADV 2ENO SER A 5 UNP P57105 EXPRESSION TAG SEQADV 2ENO SER A 6 UNP P57105 EXPRESSION TAG SEQADV 2ENO GLY A 7 UNP P57105 EXPRESSION TAG SEQADV 2ENO SER A 115 UNP P57105 EXPRESSION TAG SEQADV 2ENO GLY A 116 UNP P57105 EXPRESSION TAG SEQADV 2ENO PRO A 117 UNP P57105 EXPRESSION TAG SEQADV 2ENO SER A 118 UNP P57105 EXPRESSION TAG SEQADV 2ENO SER A 119 UNP P57105 EXPRESSION TAG SEQADV 2ENO GLY A 120 UNP P57105 EXPRESSION TAG
SEQRES 1 A 120 GLY SER SER GLY SER SER GLY MET ASN GLY ARG VAL ASP SEQRES 2 A 120 TYR LEU VAL THR GLU GLU GLU ILE ASN LEU THR ARG GLY SEQRES 3 A 120 PRO SER GLY LEU GLY PHE ASN ILE VAL GLY GLY THR ASP SEQRES 4 A 120 GLN GLN TYR VAL SER ASN ASP SER GLY ILE TYR VAL SER SEQRES 5 A 120 ARG ILE LYS GLU ASN GLY ALA ALA ALA LEU ASP GLY ARG SEQRES 6 A 120 LEU GLN GLU GLY ASP LYS ILE LEU SER VAL ASN GLY GLN SEQRES 7 A 120 ASP LEU LYS ASN LEU LEU HIS GLN ASP ALA VAL ASP LEU SEQRES 8 A 120 PHE ARG ASN ALA GLY TYR ALA VAL SER LEU ARG VAL GLN SEQRES 9 A 120 HIS ARG LEU GLN VAL GLN ASN GLY PRO ILE SER GLY PRO SEQRES 10 A 120 SER SER GLY
HELIX 1 1 GLY A 58 ASP A 63 1 6 HELIX 2 2 LEU A 84 ALA A 95 1 12
SHEET 1 A 5 TYR A 14 THR A 24 0 SHEET 2 A 5 ALA A 98 GLN A 108 -1 O LEU A 101 N ILE A 21 SHEET 3 A 5 LYS A 71 VAL A 75 -1 N SER A 74 O ARG A 102 SHEET 4 A 5 ILE A 49 ILE A 54 -1 N ILE A 49 O ILE A 72 SHEET 5 A 5 PHE A 32 VAL A 35 -1 N VAL A 35 O TYR A 50 SHEET 1 B 4 TYR A 14 THR A 24 0 SHEET 2 B 4 ALA A 98 GLN A 108 -1 O LEU A 101 N ILE A 21 SHEET 3 B 4 LYS A 71 VAL A 75 -1 N SER A 74 O ARG A 102 SHEET 4 B 4 GLN A 78 ASP A 79 -1 O GLN A 78 N VAL A 75
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000