10 20 30 40 50 60 70 80 2EMJ - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER TRANSCRIPTION 28-MAR-07 2EMJ
TITLE SOLUTION STRUCTURE OF THE C2H2 TYPE ZINC FINGER (REGION 612- TITLE 2 644) OF HUMAN ZINC FINGER PROTEIN 28 HOMOLOG
COMPND MOL_ID: 1; COMPND 2 MOLECULE: ZINC FINGER PROTEIN 28 HOMOLOG; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: ZF-C2H2 DOMAIN; COMPND 5 SYNONYM: ZFP-28, KRUEPPEL-LIKE ZINC FINGER FACTOR X6; COMPND 6 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ZFP28; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P061225-33; SOURCE 8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS
KEYWDS ZF-C2H2, NMR, STRUCTURAL GENOMICS, NPPSFA, NATIONAL PROJECT KEYWDS 2 ON PROTEIN STRUCTURAL AND FUNCTIONAL ANALYSES, RIKEN KEYWDS 3 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI, KEYWDS 4 TRANSCRIPTION
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR T.TOMIZAWA,N.TOCHIO,H.ABE,K.SAITO,H.LI,M.SATO,S.KOSHIBA, AUTHOR 2 N.KOBAYASHI,T.KIGAWA,S.YOKOYAMA,RIKEN STRUCTURAL AUTHOR 3 GENOMICS/PROTEOMICS INITIATIVE (RSGI)
REVDAT 2 24-FEB-09 2EMJ 1 VERSN REVDAT 1 02-OCT-07 2EMJ 0
JRNL AUTH N.TOCHIO,T.TOMIZAWA,H.ABE,K.SAITO,H.LI,M.SATO, JRNL AUTH 2 S.KOSHIBA,N.KOBAYASHI,T.KIGAWA,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE C2H2 TYPE ZINC FINGER JRNL TITL 2 (REGION 612-644) OF HUMAN ZINC FINGER PROTEIN 28 JRNL TITL 3 HOMOLOG JRNL REF TO BE PUBLISHED JRNL REFN
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 2.0.17 REMARK 3 AUTHORS : GUNTERT, P. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 2EMJ COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 29-MAY-07. REMARK 100 THE RCSB ID CODE IS RCSB026848.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : ABOUT 1.0MM SAMPLE U-15N, REMARK 210 13C; 20MM D-TRIS-HCL; 100MM REMARK 210 NACL; 0.05MM ZNCL2; 1MM IDA; REMARK 210 1MM D-DTT; 0.02% NAN3; 90% REMARK 210 H2O, 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY, 3D_ REMARK 210 15N-SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 900 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE II REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : TOPSPIN 1.3, NMRPIPE REMARK 210 20030801, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.9820, CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS, TARGET REMARK 210 FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 GLN A 32 -25.73 -39.58 REMARK 500 2 THR A 36 141.00 -34.12 REMARK 500 2 SER A 44 114.24 -167.51 REMARK 500 3 SER A 5 114.52 -171.13 REMARK 500 3 ALA A 16 42.81 -108.64 REMARK 500 3 GLU A 17 -58.16 -129.88 REMARK 500 3 PRO A 43 -173.27 -69.76 REMARK 500 4 SER A 5 43.21 35.08 REMARK 500 4 THR A 8 36.48 -93.34 REMARK 500 4 GLU A 17 -58.05 -125.26 REMARK 500 5 SER A 2 126.30 -39.57 REMARK 500 5 SER A 5 117.77 -166.45 REMARK 500 5 SER A 6 42.28 -105.45 REMARK 500 5 ALA A 16 35.60 -99.69 REMARK 500 5 GLU A 17 -50.23 -123.18 REMARK 500 5 HIS A 31 -62.79 -92.14 REMARK 500 5 GLU A 38 69.04 -114.48 REMARK 500 5 PRO A 43 2.61 -69.80 REMARK 500 6 ALA A 16 40.30 -99.30 REMARK 500 6 HIS A 31 -65.64 -92.03 REMARK 500 6 LYS A 39 140.54 -173.65 REMARK 500 6 PRO A 40 90.09 -69.77 REMARK 500 6 SER A 44 151.24 -45.62 REMARK 500 7 ALA A 16 34.74 -98.91 REMARK 500 7 GLU A 17 -50.99 -124.00 REMARK 500 7 THR A 36 42.82 -97.21 REMARK 500 7 PRO A 40 92.47 -69.67 REMARK 500 7 SER A 45 42.01 -106.24 REMARK 500 8 SER A 5 41.94 38.03 REMARK 500 8 ALA A 16 35.91 -98.10 REMARK 500 8 GLU A 17 -60.96 -125.55 REMARK 500 8 GLN A 32 -29.03 -37.06 REMARK 500 8 THR A 36 36.75 -90.79 REMARK 500 9 SER A 6 -50.88 -128.59 REMARK 500 9 THR A 8 39.27 -86.02 REMARK 500 9 GLN A 32 -26.58 -38.34 REMARK 500 9 GLU A 38 38.68 -84.19 REMARK 500 9 PRO A 40 91.44 -69.72 REMARK 500 9 PRO A 43 -172.39 -69.73 REMARK 500 10 SER A 3 -60.55 -128.35 REMARK 500 10 THR A 36 50.03 -99.18 REMARK 500 10 PRO A 43 -176.50 -69.74 REMARK 500 11 GLU A 10 78.30 -115.04 REMARK 500 11 ALA A 16 40.04 -100.34 REMARK 500 11 GLU A 17 -54.67 -127.02 REMARK 500 11 THR A 36 128.15 -33.86 REMARK 500 11 GLU A 38 136.84 -36.84 REMARK 500 11 PRO A 40 98.03 -69.72 REMARK 500 11 PRO A 43 -171.69 -69.75 REMARK 500 12 SER A 2 42.20 38.70 REMARK 500 12 SER A 26 -36.42 -32.94 REMARK 500 12 THR A 30 -19.09 -49.25 REMARK 500 12 HIS A 31 -65.59 -91.98 REMARK 500 13 PRO A 40 2.32 -69.80 REMARK 500 14 LYS A 39 141.85 -170.87 REMARK 500 15 GLU A 17 -61.17 -123.97 REMARK 500 15 SER A 26 -39.58 -37.74 REMARK 500 15 GLU A 38 77.23 -103.19 REMARK 500 15 LYS A 39 142.55 -173.89 REMARK 500 16 ALA A 16 38.50 -98.55 REMARK 500 16 GLU A 17 -55.06 -124.66 REMARK 500 16 GLN A 32 -18.84 -49.13 REMARK 500 16 GLU A 38 68.21 -100.74 REMARK 500 16 SER A 41 105.85 -35.46 REMARK 500 17 GLU A 17 -57.79 -125.72 REMARK 500 17 PRO A 43 -173.90 -69.78 REMARK 500 18 ALA A 16 33.67 -98.58 REMARK 500 18 GLU A 17 -58.99 -122.18 REMARK 500 18 LYS A 39 76.11 -109.51 REMARK 500 18 SER A 44 90.00 -69.08 REMARK 500 18 SER A 45 -60.46 -95.78 REMARK 500 19 THR A 8 39.71 -97.04 REMARK 500 19 GLU A 17 -55.69 -120.84 REMARK 500 19 GLN A 32 -19.01 -48.57 REMARK 500 19 PRO A 40 -174.53 -69.86 REMARK 500 20 SER A 3 176.98 -56.32 REMARK 500 20 LYS A 11 96.84 -33.60 REMARK 500 20 ALA A 16 38.71 -92.17 REMARK 500 20 GLU A 17 -60.35 -128.26 REMARK 500 20 THR A 36 30.16 -99.52 REMARK 500 20 SER A 44 103.34 -45.37 REMARK 500 REMARK 500 REMARK: NULL
REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 1 ZN A 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 15 SG REMARK 620 2 CYS A 18 SG 114.5 REMARK 620 3 HIS A 31 NE2 117.0 107.8 REMARK 620 4 HIS A 35 NE2 104.5 112.8 99.2 REMARK 620 N 1 2 3
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 201
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSO003011815.7 RELATED DB: TARGETDB
DBREF 2EMJ A 8 40 UNP Q8NHY6 ZFP28_HUMAN 612 644
SEQADV 2EMJ GLY A 1 UNP Q8NHY6 EXPRESSION TAG SEQADV 2EMJ SER A 2 UNP Q8NHY6 EXPRESSION TAG SEQADV 2EMJ SER A 3 UNP Q8NHY6 EXPRESSION TAG SEQADV 2EMJ GLY A 4 UNP Q8NHY6 EXPRESSION TAG SEQADV 2EMJ SER A 5 UNP Q8NHY6 EXPRESSION TAG SEQADV 2EMJ SER A 6 UNP Q8NHY6 EXPRESSION TAG SEQADV 2EMJ GLY A 7 UNP Q8NHY6 EXPRESSION TAG SEQADV 2EMJ SER A 41 UNP Q8NHY6 EXPRESSION TAG SEQADV 2EMJ GLY A 42 UNP Q8NHY6 EXPRESSION TAG SEQADV 2EMJ PRO A 43 UNP Q8NHY6 EXPRESSION TAG SEQADV 2EMJ SER A 44 UNP Q8NHY6 EXPRESSION TAG SEQADV 2EMJ SER A 45 UNP Q8NHY6 EXPRESSION TAG SEQADV 2EMJ GLY A 46 UNP Q8NHY6 EXPRESSION TAG
SEQRES 1 A 46 GLY SER SER GLY SER SER GLY THR GLY GLU LYS PRO PHE SEQRES 2 A 46 GLU CYS ALA GLU CYS GLY LYS SER PHE SER ILE SER SER SEQRES 3 A 46 GLN LEU ALA THR HIS GLN ARG ILE HIS THR GLY GLU LYS SEQRES 4 A 46 PRO SER GLY PRO SER SER GLY
HET ZN A 201 1
HETNAM ZN ZINC ION
FORMUL 2 ZN ZN 2+
HELIX 1 1 ILE A 24 THR A 36 1 13
SHEET 1 A 2 PHE A 13 GLU A 14 0 SHEET 2 A 2 SER A 21 PHE A 22 -1 O PHE A 22 N PHE A 13
LINK SG CYS A 15 ZN ZN A 201 1555 1555 2.22 LINK SG CYS A 18 ZN ZN A 201 1555 1555 2.31 LINK NE2 HIS A 31 ZN ZN A 201 1555 1555 2.10 LINK NE2 HIS A 35 ZN ZN A 201 1555 1555 2.09
SITE 1 AC1 4 CYS A 15 CYS A 18 HIS A 31 HIS A 35
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000