10 20 30 40 50 60 70 80 2ELZ - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER TRANSCRIPTION 28-MAR-07 2ELZ
TITLE SOLUTION STRUCTURE OF THE 17TH ZF-C2H2 DOMAIN FROM HUMAN TITLE 2 ZINC FINGER PROTEIN 224
COMPND MOL_ID: 1; COMPND 2 MOLECULE: ZINC FINGER PROTEIN 224; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: ZF-C2H2 DOMAIN; COMPND 5 SYNONYM: ZINC FINGER PROTEIN 27, ZINC FINGER PROTEIN 233, COMPND 6 ZINC FINGER PROTEIN 255, BONE MARROW ZINC FINGER 2, BMZF-2, COMPND 7 ZINC FINGER PROTEIN KOX22; COMPND 8 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ZNF224; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P061225-44; SOURCE 8 OTHER_DETAILS: CELL FREE PROTEIN SYNTHESIS
KEYWDS DNA-BINDING, METAL-BINDING, NUCLEAR PROTEIN, KEYWDS 2 PHOSPHORYLATION, POLYMORPHISM, REPEAT, REPRESSOR, KEYWDS 3 TRANSCRIPTION, TRANSCRIPTION REGULATION, ZINC, ZINC-FINGER, KEYWDS 4 STRUCTURAL GENOMICS, NPPSFA, NATIONAL PROJECT ON PROTEIN KEYWDS 5 STRUCTURAL AND FUNCTIONAL ANALYSES, RIKEN STRUCTURAL KEYWDS 6 GENOMICS/PROTEOMICS INITIATIVE, RSGI
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR C.KUROSAKI,M.YOSHIDA,F.HAYASHI,S.YOKOYAMA,RIKEN STRUCTURAL AUTHOR 2 GENOMICS/PROTEOMICS INITIATIVE (RSGI)
REVDAT 2 24-FEB-09 2ELZ 1 VERSN REVDAT 1 02-OCT-07 2ELZ 0
JRNL AUTH C.KUROSAKI,M.YOSHIDA,F.HAYASHI,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE 17TH ZF-C2H2 DOMAIN FROM JRNL TITL 2 HUMAN ZINC FINGER PROTEIN 224 JRNL REF TO BE PUBLISHED JRNL REFN
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 2.0.17 REMARK 3 AUTHORS : GUNTERT, P. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 2ELZ COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 28-MAY-07. REMARK 100 THE RCSB ID CODE IS RCSB026829.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.16MM 13C, 15N-LABELED REMARK 210 PROTEIN; 20MM D-TRIS-HCL(PH REMARK 210 7.0); 100MM NACL; 1MM D-DTT; REMARK 210 0.02% NAN3; 50UM ZNCL2; 1MM REMARK 210 IDA, 90% H2O; 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY, 3D_ REMARK 210 15N-SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 700 MHZ REMARK 210 SPECTROMETER MODEL : ECA REMARK 210 SPECTROMETER MANUFACTURER : JEOL REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : DELTA NMR 4.3.2, NMRPIPE REMARK 210 20031121, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.9817, CYANA 2.0.17 REMARK 210 METHOD USED : NULL REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS, REMARK 210 STRUCTURES WITH THE LOWEST REMARK 210 ENERGY, TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 6 158.20 -43.52 REMARK 500 1 PRO A 12 0.72 -69.79 REMARK 500 1 GLN A 32 -34.48 -34.49 REMARK 500 1 HIS A 35 45.40 -86.10 REMARK 500 1 PRO A 43 88.83 -69.68 REMARK 500 2 SER A 6 98.10 -51.53 REMARK 500 2 ARG A 24 119.70 -161.01 REMARK 500 2 MET A 36 106.11 -35.98 REMARK 500 2 THR A 40 97.25 -62.91 REMARK 500 2 PRO A 43 -177.88 -69.76 REMARK 500 3 SER A 5 -63.38 -129.39 REMARK 500 3 SER A 8 -33.88 -131.34 REMARK 500 3 CYS A 18 -51.77 -134.79 REMARK 500 3 LYS A 39 49.01 35.93 REMARK 500 3 THR A 40 153.60 -43.95 REMARK 500 4 VAL A 34 -38.76 -35.50 REMARK 500 4 HIS A 35 49.27 -88.36 REMARK 500 5 CYS A 18 -41.76 -130.16 REMARK 500 5 LYS A 20 159.76 -44.38 REMARK 500 5 HIS A 35 33.30 -94.17 REMARK 500 5 LYS A 39 41.64 36.22 REMARK 500 6 SER A 2 112.38 -164.58 REMARK 500 6 VAL A 9 154.09 -36.97 REMARK 500 7 ARG A 25 -63.96 -92.84 REMARK 500 7 MET A 36 95.16 -58.12 REMARK 500 8 HIS A 35 46.71 -94.62 REMARK 500 8 LYS A 39 47.93 36.67 REMARK 500 9 SER A 5 -39.60 -39.88 REMARK 500 9 LYS A 14 133.23 -172.32 REMARK 500 9 GLU A 38 -44.16 -132.56 REMARK 500 9 SER A 45 -52.05 -130.08 REMARK 500 10 SER A 8 52.20 -90.66 REMARK 500 10 LYS A 20 141.69 -39.48 REMARK 500 10 VAL A 34 -32.19 -37.93 REMARK 500 10 HIS A 35 40.83 -95.68 REMARK 500 11 VAL A 34 -35.73 -35.94 REMARK 500 11 HIS A 35 41.96 -88.02 REMARK 500 11 LYS A 39 -51.90 -132.65 REMARK 500 12 SER A 3 153.79 -39.88 REMARK 500 12 LYS A 11 143.93 -34.81 REMARK 500 12 ASP A 17 -54.64 -124.14 REMARK 500 12 MET A 36 97.39 -47.78 REMARK 500 13 SER A 3 95.39 -51.09 REMARK 500 13 SER A 6 -52.93 -133.58 REMARK 500 13 CYS A 18 -51.27 -122.99 REMARK 500 13 VAL A 34 -29.59 -36.44 REMARK 500 13 MET A 36 114.16 -38.39 REMARK 500 14 SER A 5 115.79 -161.49 REMARK 500 14 VAL A 34 -36.80 -35.11 REMARK 500 14 MET A 36 48.89 -75.72 REMARK 500 14 THR A 40 140.47 -35.11 REMARK 500 15 SER A 5 130.12 -36.26 REMARK 500 15 SER A 6 41.65 -86.58 REMARK 500 15 SER A 41 134.42 -39.53 REMARK 500 15 PRO A 43 -172.82 -69.73 REMARK 500 16 SER A 3 41.69 36.17 REMARK 500 16 VAL A 9 149.57 -39.34 REMARK 500 16 MET A 36 103.40 -43.65 REMARK 500 17 SER A 8 41.31 36.88 REMARK 500 17 LYS A 14 142.54 -172.27 REMARK 500 18 GLN A 32 -38.29 -35.85 REMARK 500 18 SER A 41 49.21 -107.33 REMARK 500 18 SER A 45 44.53 -105.83 REMARK 500 19 GLN A 32 -35.81 -39.16 REMARK 500 19 VAL A 34 -31.18 -35.41 REMARK 500 19 HIS A 35 48.51 -95.64 REMARK 500 19 THR A 40 132.37 -34.53 REMARK 500 20 VAL A 9 120.06 -38.16 REMARK 500 20 ARG A 25 -61.80 -90.64 REMARK 500 20 VAL A 34 -38.20 -37.22 REMARK 500 20 PRO A 43 84.44 -69.73 REMARK 500 20 SER A 44 42.66 34.26 REMARK 500 20 SER A 45 160.94 -49.50 REMARK 500 REMARK 500 REMARK: NULL
REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 1 ZN A 200 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 15 SG REMARK 620 2 CYS A 18 SG 103.5 REMARK 620 3 HIS A 31 NE2 109.2 109.3 REMARK 620 4 HIS A 35 NE2 106.5 110.4 117.0 REMARK 620 N 1 2 3
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSO003012948.10 RELATED DB: TARGETDB
DBREF 2ELZ A 8 40 UNP Q9NZL3 ZN224_HUMAN 647 679
SEQADV 2ELZ GLY A 1 UNP Q9NZL3 EXPRESSION TAG SEQADV 2ELZ SER A 2 UNP Q9NZL3 EXPRESSION TAG SEQADV 2ELZ SER A 3 UNP Q9NZL3 EXPRESSION TAG SEQADV 2ELZ GLY A 4 UNP Q9NZL3 EXPRESSION TAG SEQADV 2ELZ SER A 5 UNP Q9NZL3 EXPRESSION TAG SEQADV 2ELZ SER A 6 UNP Q9NZL3 EXPRESSION TAG SEQADV 2ELZ GLY A 7 UNP Q9NZL3 EXPRESSION TAG SEQADV 2ELZ SER A 41 UNP Q9NZL3 EXPRESSION TAG SEQADV 2ELZ GLY A 42 UNP Q9NZL3 EXPRESSION TAG SEQADV 2ELZ PRO A 43 UNP Q9NZL3 EXPRESSION TAG SEQADV 2ELZ SER A 44 UNP Q9NZL3 EXPRESSION TAG SEQADV 2ELZ SER A 45 UNP Q9NZL3 EXPRESSION TAG SEQADV 2ELZ GLY A 46 UNP Q9NZL3 EXPRESSION TAG
SEQRES 1 A 46 GLY SER SER GLY SER SER GLY SER VAL GLU LYS PRO TYR SEQRES 2 A 46 LYS CYS GLU ASP CYS GLY LYS GLY TYR ASN ARG ARG LEU SEQRES 3 A 46 ASN LEU ASP MET HIS GLN ARG VAL HIS MET GLY GLU LYS SEQRES 4 A 46 THR SER GLY PRO SER SER GLY
HET ZN A 200 1
HETNAM ZN ZINC ION
FORMUL 2 ZN ZN 2+
HELIX 1 1 ARG A 24 GLN A 32 1 9 HELIX 2 2 ARG A 33 GLY A 37 5 5
LINK SG CYS A 15 ZN ZN A 200 1555 1555 2.34 LINK SG CYS A 18 ZN ZN A 200 1555 1555 2.33 LINK NE2 HIS A 31 ZN ZN A 200 1555 1555 1.95 LINK NE2 HIS A 35 ZN ZN A 200 1555 1555 2.05
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000