10 20 30 40 50 60 70 80 2EKH - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER SIGNALING PROTEIN 23-MAR-07 2EKH
TITLE SOLUTION STRUCTURES OF THE SH3 DOMAIN OF HUMAN KIAA0418
COMPND MOL_ID: 1; COMPND 2 MOLECULE: SH3 AND PX DOMAIN-CONTAINING PROTEIN 2A; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: SH3 DOMAIN; COMPND 5 SYNONYM: KIAA0418 PROTEIN, SH3 MULTIPLE DOMAINS PROTEIN 1, COMPND 6 FIVE SH3 DOMAIN-CONTAINING PROTEIN, ADAPTOR PROTEIN TKS5; COMPND 7 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: KIAA0418; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P050919-08; SOURCE 8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS
KEYWDS SH3 DOMAIN, STRUCTURAL GENOMICS, NPPSFA, NATIONAL PROJECT KEYWDS 2 ON PROTEIN STRUCTURAL AND FUNCTIONAL ANALYSES, RIKEN KEYWDS 3 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI, SIGNALING KEYWDS 4 PROTEIN
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR M.SATO,N.TOCHIO,S.KOSHIBA,M.INOUE,T.KIGAWA,S.YOKOYAMA,RIKEN AUTHOR 2 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI)
REVDAT 2 24-FEB-09 2EKH 1 VERSN REVDAT 1 25-SEP-07 2EKH 0
JRNL AUTH M.SATO,N.TOCHIO,S.KOSHIBA,M.INOUE,T.KIGAWA, JRNL AUTH 2 S.YOKOYAMA JRNL TITL SOLUTION STRUCTURES OF THE SH3 DOMAIN OF HUMAN JRNL TITL 2 KIAA0418 JRNL REF TO BE PUBLISHED JRNL REFN
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 2.0.17 REMARK 3 AUTHORS : GUNTERT, P. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 2EKH COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 25-APR-07. REMARK 100 THE RCSB ID CODE IS RCSB026775.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 296 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1MM SH3 DOMAIN U-15N, 13C; REMARK 210 20MM D-TRIS HCL; 100MM NACL; REMARK 210 1MM D-DTT; 0.02% NAN3; 90% REMARK 210 H2O, 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY, 3D_ REMARK 210 15N-SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR 3.5, NMRPIPE REMARK 210 20031121, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.9827, CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS, TARGET REMARK 210 FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 6 32.14 -89.43 REMARK 500 1 PRO A 68 85.63 -69.77 REMARK 500 1 GLU A 74 -38.65 -39.90 REMARK 500 1 PRO A 77 83.51 -69.75 REMARK 500 1 SER A 78 -176.45 -54.32 REMARK 500 2 ALA A 8 -176.24 -62.11 REMARK 500 2 ASP A 63 32.68 34.84 REMARK 500 3 SER A 5 -59.94 -128.07 REMARK 500 3 ASP A 63 37.98 -89.93 REMARK 500 3 ASN A 65 120.45 -37.28 REMARK 500 3 PRO A 68 85.28 -69.74 REMARK 500 4 GLU A 64 82.86 -69.13 REMARK 500 4 GLU A 66 115.84 -171.28 REMARK 500 4 GLN A 67 152.44 -43.15 REMARK 500 4 PRO A 68 88.78 -69.82 REMARK 500 4 PRO A 77 89.34 -69.82 REMARK 500 5 ASP A 63 33.56 34.09 REMARK 500 5 GLN A 67 144.02 -38.36 REMARK 500 6 SER A 3 -55.09 -131.86 REMARK 500 6 GLU A 40 -37.99 -39.71 REMARK 500 6 GLU A 66 114.29 -167.69 REMARK 500 6 PRO A 68 80.43 -69.79 REMARK 500 6 ASP A 69 52.23 35.19 REMARK 500 6 SER A 71 135.74 -171.92 REMARK 500 6 SER A 75 109.19 -168.51 REMARK 500 6 SER A 78 114.14 -36.57 REMARK 500 7 SER A 6 43.18 36.79 REMARK 500 7 ASP A 63 25.90 39.15 REMARK 500 7 GLU A 64 54.30 -105.35 REMARK 500 7 GLN A 67 146.76 -37.14 REMARK 500 7 GLU A 74 92.66 -65.64 REMARK 500 7 PRO A 77 86.83 -69.79 REMARK 500 8 GLU A 50 30.10 -87.39 REMARK 500 8 PRO A 70 95.24 -69.79 REMARK 500 8 SER A 75 158.26 -48.79 REMARK 500 8 PRO A 77 -173.69 -69.81 REMARK 500 9 ASP A 63 33.45 34.18 REMARK 500 9 PRO A 68 96.18 -69.80 REMARK 500 9 PRO A 70 91.77 -69.74 REMARK 500 9 SER A 71 166.12 -45.35 REMARK 500 10 ASP A 63 80.81 -64.06 REMARK 500 10 GLU A 66 79.44 -106.96 REMARK 500 10 PRO A 68 -170.69 -69.78 REMARK 500 10 ASP A 69 77.47 -111.94 REMARK 500 10 SER A 75 90.53 -65.65 REMARK 500 11 SER A 3 85.84 -60.65 REMARK 500 11 SER A 5 36.10 -84.07 REMARK 500 11 GLU A 40 -38.65 -39.05 REMARK 500 11 ASP A 63 33.31 35.08 REMARK 500 11 ASN A 65 102.21 -37.15 REMARK 500 11 GLN A 67 144.43 -39.80 REMARK 500 11 SER A 78 34.91 73.34 REMARK 500 11 SER A 79 135.63 -38.87 REMARK 500 12 GLU A 40 -38.16 -34.65 REMARK 500 12 ASP A 63 37.22 -83.39 REMARK 500 12 PRO A 70 96.11 -69.71 REMARK 500 13 ALA A 8 170.52 -51.34 REMARK 500 13 ASP A 63 33.76 34.15 REMARK 500 13 ASN A 65 50.62 35.51 REMARK 500 13 GLU A 66 71.69 -119.86 REMARK 500 13 SER A 71 84.14 -62.63 REMARK 500 14 ALA A 8 -175.37 -61.74 REMARK 500 14 GLU A 50 31.08 -90.63 REMARK 500 14 ASP A 63 31.58 -87.19 REMARK 500 14 GLU A 64 -35.13 -35.81 REMARK 500 14 SER A 79 137.66 -36.82 REMARK 500 16 SER A 6 40.02 -84.88 REMARK 500 16 ASP A 22 -34.52 -39.55 REMARK 500 16 GLU A 40 -38.41 -37.67 REMARK 500 16 ASN A 65 99.15 -46.62 REMARK 500 17 ASP A 69 96.22 -32.84 REMARK 500 17 PRO A 70 -165.63 -69.79 REMARK 500 17 SER A 79 94.14 -67.88 REMARK 500 18 SER A 2 -60.11 -91.57 REMARK 500 18 PRO A 70 -177.04 -69.76 REMARK 500 18 SER A 78 130.21 -34.58 REMARK 500 19 SER A 3 55.18 -94.34 REMARK 500 19 SER A 41 -72.78 -56.13 REMARK 500 19 PRO A 68 94.21 -69.85 REMARK 500 19 SER A 71 151.47 -48.03 REMARK 500 20 SER A 5 110.05 -173.75 REMARK 500 20 ASP A 63 27.21 39.69 REMARK 500 20 ASN A 65 47.43 72.30 REMARK 500 20 LYS A 73 155.84 -39.97 REMARK 500 REMARK 500 REMARK: NULL
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSK002100407.3 RELATED DB: TARGETDB
DBREF 2EKH A 8 74 UNP Q5TCZ1 SPD2A_HUMAN 842 908
SEQADV 2EKH GLY A 1 UNP Q5TCZ1 EXPRESSION TAG SEQADV 2EKH SER A 2 UNP Q5TCZ1 EXPRESSION TAG SEQADV 2EKH SER A 3 UNP Q5TCZ1 EXPRESSION TAG SEQADV 2EKH GLY A 4 UNP Q5TCZ1 EXPRESSION TAG SEQADV 2EKH SER A 5 UNP Q5TCZ1 EXPRESSION TAG SEQADV 2EKH SER A 6 UNP Q5TCZ1 EXPRESSION TAG SEQADV 2EKH GLY A 7 UNP Q5TCZ1 EXPRESSION TAG SEQADV 2EKH SER A 75 UNP Q5TCZ1 EXPRESSION TAG SEQADV 2EKH GLY A 76 UNP Q5TCZ1 EXPRESSION TAG SEQADV 2EKH PRO A 77 UNP Q5TCZ1 EXPRESSION TAG SEQADV 2EKH SER A 78 UNP Q5TCZ1 EXPRESSION TAG SEQADV 2EKH SER A 79 UNP Q5TCZ1 EXPRESSION TAG SEQADV 2EKH GLY A 80 UNP Q5TCZ1 EXPRESSION TAG
SEQRES 1 A 80 GLY SER SER GLY SER SER GLY ALA THR SER TYR MET THR SEQRES 2 A 80 CYS SER ALA TYR GLN LYS VAL GLN ASP SER GLU ILE SER SEQRES 3 A 80 PHE PRO ALA GLY VAL GLU VAL GLN VAL LEU GLU LYS GLN SEQRES 4 A 80 GLU SER GLY TRP TRP TYR VAL ARG PHE GLY GLU LEU GLU SEQRES 5 A 80 GLY TRP ALA PRO SER HIS TYR LEU VAL LEU ASP GLU ASN SEQRES 6 A 80 GLU GLN PRO ASP PRO SER GLY LYS GLU SER GLY PRO SER SEQRES 7 A 80 SER GLY
SHEET 1 A 5 LEU A 51 PRO A 56 0 SHEET 2 A 5 TRP A 43 PHE A 48 -1 N VAL A 46 O GLY A 53 SHEET 3 A 5 GLU A 32 LYS A 38 -1 N LEU A 36 O TYR A 45 SHEET 4 A 5 THR A 9 THR A 13 -1 N TYR A 11 O VAL A 33 SHEET 5 A 5 LEU A 60 VAL A 61 -1 O VAL A 61 N MET A 12
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000