10 20 30 40 50 60 70 80 2EEI - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER METAL BINDING PROTEIN 15-FEB-07 2EEI
TITLE SOLUTION STRUCTURE OF SECOND PDZ DOMAIN OF PDZ DOMAIN TITLE 2 CONTAINING PROTEIN 1
COMPND MOL_ID: 1; COMPND 2 MOLECULE: PDZ DOMAIN-CONTAINING PROTEIN 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: PDZ DOMAIN; COMPND 5 SYNONYM: CFTR-ASSOCIATED PROTEIN OF 70 KDA, NA/PI COMPND 6 COTRANSPORTER C-TERMINAL-ASSOCIATED PROTEIN, NAPI-CAP1, COMPND 7 NA(+)/H(+) EXCHANGER REGULATORY FACTOR 3, SODIUM-HYDROGEN COMPND 8 EXCHANGER REGULATORY FACTOR 3; COMPND 9 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PDZK1; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P050905-17; SOURCE 8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS
KEYWDS PDZ DOMAIN, REGULATORY FACTOR, STRUCTURAL GENOMICS, NPPSFA, KEYWDS 2 NATIONAL PROJECT ON PROTEIN STRUCTURAL AND FUNCTIONAL KEYWDS 3 ANALYSES, RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, KEYWDS 4 RSGI, METAL BINDING PROTEIN
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR T.N.NIRAULA,T.TOMIZAWA,K.KOSHIBA,M.INOUE,T.KIGAWA, AUTHOR 2 S.YOKOYAMA,RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE AUTHOR 3 (RSGI)
REVDAT 2 24-FEB-09 2EEI 1 VERSN REVDAT 1 26-FEB-08 2EEI 0
JRNL AUTH T.N.NIRAULA,T.TOMIZAWA,K.KOSHIBA,M.INOUE,T.KIGAWA, JRNL AUTH 2 S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF SECOND PDZ DOMAIN OF PDZ JRNL TITL 2 DOMAIN CONTAINING PROTEIN 1 JRNL REF TO BE PUBLISHED JRNL REFN
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 2.0.17 REMARK 3 AUTHORS : GUNTERT, P. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 2EEI COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 27-FEB-07. REMARK 100 THE RCSB ID CODE IS RCSB026565.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 3.36MM PDZ DOMAIN U-13C,15N; REMARK 210 20MM D-TRIS-HCL(PH 7.0); 100MM REMARK 210 NACL; 1MM D-DTT; 0.02% NAN3; REMARK 210 10% D20, 90% H2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY, 3D_ REMARK 210 13C-SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR 3.5, NMRPIPE REMARK 210 20031121, NMR VIEW 5.0.4, REMARK 210 KUJIRA 0.9820, CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS, TARGET REMARK 210 FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 GLU A 17 -56.97 -131.80 REMARK 500 1 TYR A 21 176.48 -50.21 REMARK 500 1 GLN A 42 43.64 34.41 REMARK 500 1 GLU A 58 145.07 -173.84 REMARK 500 1 ASN A 60 29.17 47.51 REMARK 500 1 SER A 79 -39.11 -36.22 REMARK 500 1 HIS A 96 95.99 -64.33 REMARK 500 1 GLN A 99 88.92 -51.26 REMARK 500 2 GLU A 17 -57.21 -121.69 REMARK 500 2 TYR A 21 -73.15 -42.92 REMARK 500 2 PHE A 23 176.11 -56.55 REMARK 500 2 GLN A 29 41.87 -82.05 REMARK 500 2 THR A 40 127.52 -37.86 REMARK 500 2 ASP A 53 28.06 39.86 REMARK 500 2 LYS A 94 41.33 -82.12 REMARK 500 2 SER A 105 -52.54 -127.17 REMARK 500 3 LYS A 16 104.17 -49.51 REMARK 500 3 GLU A 17 -63.33 -101.70 REMARK 500 3 TYR A 21 167.08 -48.96 REMARK 500 3 HIS A 55 102.61 -54.67 REMARK 500 3 VAL A 73 -31.28 -39.69 REMARK 500 3 ARG A 95 95.17 -69.48 REMARK 500 4 LYS A 16 85.81 -62.47 REMARK 500 4 SER A 20 -68.77 -105.93 REMARK 500 4 THR A 40 135.93 -33.74 REMARK 500 4 GLN A 42 40.50 33.85 REMARK 500 4 ASN A 63 105.43 -55.77 REMARK 500 4 SER A 81 -52.07 -121.28 REMARK 500 4 ASP A 93 118.31 -35.28 REMARK 500 5 SER A 6 -63.09 -95.51 REMARK 500 5 PRO A 9 -168.90 -69.83 REMARK 500 5 TYR A 21 174.16 -52.14 REMARK 500 5 LYS A 31 -177.03 -68.85 REMARK 500 5 ASP A 53 31.28 38.89 REMARK 500 5 HIS A 55 108.73 -52.13 REMARK 500 5 ASN A 63 101.39 -54.18 REMARK 500 5 VAL A 73 -34.86 -37.01 REMARK 500 5 ARG A 95 91.25 -65.94 REMARK 500 5 SER A 105 -61.66 -97.03 REMARK 500 6 PRO A 9 -168.49 -69.76 REMARK 500 6 LYS A 16 106.66 -44.35 REMARK 500 6 GLU A 17 -62.07 -103.25 REMARK 500 6 TYR A 21 -175.69 -53.92 REMARK 500 6 ALA A 45 -72.99 -71.39 REMARK 500 6 ASP A 53 29.24 47.24 REMARK 500 6 VAL A 73 -35.64 -35.16 REMARK 500 6 ARG A 95 130.94 -174.82 REMARK 500 6 HIS A 96 45.77 -81.20 REMARK 500 6 SER A 101 98.68 -34.65 REMARK 500 6 PRO A 103 2.76 -69.74 REMARK 500 6 SER A 104 40.94 72.45 REMARK 500 7 LYS A 16 99.13 -61.92 REMARK 500 7 GLU A 17 -60.78 -99.76 REMARK 500 7 TYR A 21 -72.17 -66.14 REMARK 500 7 THR A 40 137.69 -38.44 REMARK 500 7 GLN A 42 37.29 36.07 REMARK 500 7 HIS A 55 100.76 -52.60 REMARK 500 7 SER A 81 -37.34 -132.50 REMARK 500 7 LYS A 94 89.66 -58.95 REMARK 500 7 HIS A 96 101.38 -47.39 REMARK 500 7 VAL A 97 125.25 -36.19 REMARK 500 8 PRO A 9 -176.74 -69.73 REMARK 500 8 GLU A 17 -64.18 -122.03 REMARK 500 8 TYR A 21 -71.97 -68.26 REMARK 500 8 GLN A 42 46.73 34.15 REMARK 500 8 GLU A 58 144.53 -173.30 REMARK 500 8 ASN A 60 34.77 38.05 REMARK 500 8 VAL A 73 -35.09 -38.43 REMARK 500 8 LYS A 94 105.97 -41.74 REMARK 500 8 SER A 101 -62.58 -102.67 REMARK 500 8 SER A 104 99.06 -58.25 REMARK 500 9 LYS A 16 95.35 -51.43 REMARK 500 9 TYR A 21 -70.13 -38.57 REMARK 500 9 GLN A 42 35.75 70.30 REMARK 500 9 GLU A 58 142.42 -170.12 REMARK 500 9 ASN A 63 122.59 -35.45 REMARK 500 9 SER A 79 -38.40 -35.11 REMARK 500 9 GLN A 99 177.11 -53.26 REMARK 500 10 SER A 3 116.56 -35.08 REMARK 500 10 PRO A 9 -179.17 -69.78 REMARK 500 10 LYS A 16 105.03 -47.62 REMARK 500 10 TYR A 21 172.98 -47.58 REMARK 500 10 HIS A 55 103.23 -51.62 REMARK 500 10 HIS A 96 87.75 -67.30 REMARK 500 10 PRO A 103 1.79 -69.70 REMARK 500 10 SER A 104 121.12 -35.86 REMARK 500 11 SER A 2 48.16 -85.93 REMARK 500 11 SER A 5 40.51 -93.03 REMARK 500 11 LYS A 16 105.72 -45.29 REMARK 500 11 THR A 40 131.84 -34.33 REMARK 500 11 ASP A 53 26.44 47.57 REMARK 500 11 SER A 105 47.02 37.90 REMARK 500 12 ASN A 63 107.11 -50.37 REMARK 500 12 SER A 104 -57.53 -120.58 REMARK 500 12 SER A 105 107.64 -59.22 REMARK 500 13 TYR A 21 -74.03 -44.05 REMARK 500 13 LYS A 31 -177.43 -58.47 REMARK 500 13 GLN A 42 50.67 71.22 REMARK 500 13 ALA A 45 -70.03 -73.08 REMARK 500 13 ASN A 63 109.45 -58.75 REMARK 500 14 PRO A 9 -175.15 -69.74 REMARK 500 14 LYS A 16 93.35 -59.17 REMARK 500 14 HIS A 55 100.49 -50.59 REMARK 500 14 ASN A 63 109.30 -58.80 REMARK 500 14 VAL A 73 -38.10 -38.90 REMARK 500 14 GLN A 99 139.66 -171.56 REMARK 500 14 SER A 105 43.09 34.36 REMARK 500 15 GLU A 17 -73.48 -123.46 REMARK 500 15 TYR A 21 -174.56 -66.88 REMARK 500 15 THR A 37 -50.67 -120.13 REMARK 500 15 THR A 40 137.26 -34.17 REMARK 500 15 HIS A 55 109.35 -57.97 REMARK 500 15 ASN A 63 105.98 -47.33 REMARK 500 15 SER A 104 108.91 -36.43 REMARK 500 16 SER A 3 123.58 -34.77 REMARK 500 16 PRO A 9 -170.60 -69.79 REMARK 500 16 TYR A 21 -175.49 -68.89 REMARK 500 16 VAL A 44 -71.19 -54.16 REMARK 500 16 ASN A 60 30.29 36.94 REMARK 500 16 ASP A 66 40.04 -108.89 REMARK 500 17 SER A 3 144.82 -171.17 REMARK 500 17 GLU A 17 -60.55 -120.64 REMARK 500 17 SER A 79 -38.78 -35.12 REMARK 500 17 ASP A 93 128.52 -34.58 REMARK 500 17 SER A 101 106.53 -53.70 REMARK 500 18 SER A 3 106.04 -52.92 REMARK 500 18 PRO A 9 -179.56 -69.79 REMARK 500 18 LYS A 16 100.09 -56.59 REMARK 500 18 TYR A 21 173.20 -46.64 REMARK 500 18 GLU A 58 142.58 -175.57 REMARK 500 18 GLN A 99 28.48 42.43 REMARK 500 19 PRO A 9 -171.37 -69.76 REMARK 500 19 LYS A 16 106.58 -44.18 REMARK 500 19 TYR A 21 172.26 -51.35 REMARK 500 19 LYS A 31 -179.12 -60.80 REMARK 500 19 ALA A 52 158.98 -46.77 REMARK 500 19 HIS A 55 108.92 -53.49 REMARK 500 20 SER A 5 125.46 -170.88 REMARK 500 20 TYR A 21 -73.86 -51.37 REMARK 500 20 ALA A 45 -71.67 -63.75 REMARK 500 20 ASP A 53 44.56 73.65 REMARK 500 20 ASN A 60 27.51 48.48 REMARK 500 20 GLU A 62 114.99 -162.86 REMARK 500 20 ASP A 93 39.16 -81.93 REMARK 500 20 LYS A 94 45.48 33.51 REMARK 500 20 PRO A 103 2.72 -69.78 REMARK 500 20 SER A 104 99.99 -34.53 REMARK 500 REMARK 500 REMARK: NULL
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2EEJ RELATED DB: PDB REMARK 900 DIFFERENT DOMAIN OF THE SAME PROTEIN REMARK 900 RELATED ID: HSS001001614.1 RELATED DB: TARGETDB
DBREF 2EEI A 8 100 UNP Q5T2W1 PDZD1_HUMAN 132 224
SEQADV 2EEI GLY A 1 UNP Q5T2W1 EXPRESSION TAG SEQADV 2EEI SER A 2 UNP Q5T2W1 EXPRESSION TAG SEQADV 2EEI SER A 3 UNP Q5T2W1 EXPRESSION TAG SEQADV 2EEI GLY A 4 UNP Q5T2W1 EXPRESSION TAG SEQADV 2EEI SER A 5 UNP Q5T2W1 EXPRESSION TAG SEQADV 2EEI SER A 6 UNP Q5T2W1 EXPRESSION TAG SEQADV 2EEI GLY A 7 UNP Q5T2W1 EXPRESSION TAG SEQADV 2EEI SER A 101 UNP Q5T2W1 EXPRESSION TAG SEQADV 2EEI GLY A 102 UNP Q5T2W1 EXPRESSION TAG SEQADV 2EEI PRO A 103 UNP Q5T2W1 EXPRESSION TAG SEQADV 2EEI SER A 104 UNP Q5T2W1 EXPRESSION TAG SEQADV 2EEI SER A 105 UNP Q5T2W1 EXPRESSION TAG SEQADV 2EEI GLY A 106 UNP Q5T2W1 EXPRESSION TAG
SEQRES 1 A 106 GLY SER SER GLY SER SER GLY GLN PRO ARG LEU CYS TYR SEQRES 2 A 106 LEU VAL LYS GLU GLY GLY SER TYR GLY PHE SER LEU LYS SEQRES 3 A 106 THR VAL GLN GLY LYS LYS GLY VAL TYR MET THR ASP ILE SEQRES 4 A 106 THR PRO GLN GLY VAL ALA MET ARG ALA GLY VAL LEU ALA SEQRES 5 A 106 ASP ASP HIS LEU ILE GLU VAL ASN GLY GLU ASN VAL GLU SEQRES 6 A 106 ASP ALA SER HIS GLU GLU VAL VAL GLU LYS VAL LYS LYS SEQRES 7 A 106 SER GLY SER ARG VAL MET PHE LEU LEU VAL ASP LYS GLU SEQRES 8 A 106 THR ASP LYS ARG HIS VAL GLU GLN LYS SER GLY PRO SER SEQRES 9 A 106 SER GLY
HELIX 1 1 GLY A 43 GLY A 49 1 7 HELIX 2 2 SER A 68 GLY A 80 1 13
SHEET 1 A 5 ARG A 10 VAL A 15 0 SHEET 2 A 5 ARG A 82 LEU A 87 -1 O PHE A 85 N CYS A 12 SHEET 3 A 5 ASP A 54 VAL A 59 -1 N ILE A 57 O LEU A 86 SHEET 4 A 5 TYR A 35 MET A 36 -1 N MET A 36 O ASP A 54 SHEET 5 A 5 LEU A 25 LYS A 26 -1 N LYS A 26 O TYR A 35 SHEET 1 B 4 ARG A 10 VAL A 15 0 SHEET 2 B 4 ARG A 82 LEU A 87 -1 O PHE A 85 N CYS A 12 SHEET 3 B 4 ASP A 54 VAL A 59 -1 N ILE A 57 O LEU A 86 SHEET 4 B 4 GLU A 62 ASN A 63 -1 O GLU A 62 N VAL A 59
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000