10 20 30 40 50 60 70 80 2EE7 - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER STRUCTURAL PROTEIN 15-FEB-07 2EE7
TITLE SOLUTION STRUCTURE OF THE CH DOMAIN FROM HUMAN SPERM TITLE 2 FLAGELLAR PROTEIN 1
COMPND MOL_ID: 1; COMPND 2 MOLECULE: SPERM FLAGELLAR PROTEIN 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: CH DOMAIN; COMPND 5 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SPEF1; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P060522-17; SOURCE 8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS
KEYWDS ALL ALPHA PROTEIN, CH DOMAIN, STRUCTURAL GENOMICS, NPPSFA, KEYWDS 2 NATIONAL PROJECT ON PROTEIN STRUCTURAL AND FUNCTIONAL KEYWDS 3 ANALYSES, RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, KEYWDS 4 RSGI, STRUCTURAL PROTEIN
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR T.TOMIZAWA,S.KOSHIBA,S.WATANABE,T.HARADA,T.KIGAWA, AUTHOR 2 S.YOKOYAMA,RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE AUTHOR 3 (RSGI)
REVDAT 2 24-FEB-09 2EE7 1 VERSN REVDAT 1 21-AUG-07 2EE7 0
JRNL AUTH T.TOMIZAWA,S.KOSHIBA,S.WATANABE,T.HARADA,T.KIGAWA, JRNL AUTH 2 S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE CH DOMAIN FROM HUMAN JRNL TITL 2 SPERM FLAGELLAR PROTEIN 1 JRNL REF TO BE PUBLISHED JRNL REFN
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 2.0.17 REMARK 3 AUTHORS : GUNTERT, P. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 2EE7 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 22-FEB-07. REMARK 100 THE RCSB ID CODE IS RCSB026554.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 296 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.22MM CH DOMAIN U-15N,13C; REMARK 210 20MM D-TRIS-HCL(PH 7.0); 100MM REMARK 210 NACL; 1MM D-DTT; 0.02% NAN3; REMARK 210 90% H2O, 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY, 3D_ REMARK 210 15N-SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 900 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE II REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : TOPSPIN 1.3, NMRPIPE REMARK 210 20060524, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.9823, CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS, REMARK 210 RESTRAINTED MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS, REMARK 210 STRUCTURES WITH THE LOWEST REMARK 210 ENERGY, TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 3 93.81 -67.75 REMARK 500 1 PRO A 28 94.64 -69.81 REMARK 500 1 SER A 30 72.91 -69.48 REMARK 500 1 PRO A 32 -165.82 -69.79 REMARK 500 1 ASN A 88 25.78 40.82 REMARK 500 2 ASP A 13 174.27 -52.80 REMARK 500 2 GLN A 19 -39.56 -39.73 REMARK 500 2 PRO A 28 92.73 -69.77 REMARK 500 2 ARG A 31 145.64 -174.94 REMARK 500 2 ARG A 34 138.50 -38.76 REMARK 500 2 ASN A 35 139.50 -36.76 REMARK 500 2 SER A 41 -30.76 -36.21 REMARK 500 2 VAL A 83 -68.79 -130.92 REMARK 500 2 ASN A 88 36.73 36.09 REMARK 500 2 PRO A 92 -175.01 -69.74 REMARK 500 2 CYS A 102 52.82 36.99 REMARK 500 2 VAL A 106 -58.48 -134.41 REMARK 500 2 ARG A 124 128.61 -39.26 REMARK 500 3 SER A 3 162.71 -41.86 REMARK 500 3 ARG A 31 158.81 -46.80 REMARK 500 3 PRO A 32 -167.87 -69.77 REMARK 500 3 ASN A 35 104.04 -39.90 REMARK 500 3 SER A 41 -34.71 -35.54 REMARK 500 3 MET A 57 -33.21 -38.54 REMARK 500 3 HIS A 61 -35.22 -38.65 REMARK 500 3 ASN A 67 -67.70 -94.58 REMARK 500 3 VAL A 83 -70.02 -107.76 REMARK 500 3 LEU A 87 31.85 -87.17 REMARK 500 4 PRO A 28 8.12 -69.74 REMARK 500 4 LEU A 29 133.72 -30.32 REMARK 500 4 SER A 30 48.77 -78.22 REMARK 500 4 PRO A 32 -167.93 -69.80 REMARK 500 4 ARG A 34 174.52 -54.87 REMARK 500 4 SER A 41 -39.15 -35.14 REMARK 500 4 HIS A 61 -37.68 -131.68 REMARK 500 4 SER A 68 160.73 -43.04 REMARK 500 4 VAL A 83 -71.42 -121.38 REMARK 500 4 LEU A 87 33.16 -94.04 REMARK 500 4 ASN A 88 29.49 43.16 REMARK 500 4 GLN A 101 31.66 -92.44 REMARK 500 4 CYS A 102 44.49 35.79 REMARK 500 4 VAL A 106 -61.71 -131.01 REMARK 500 4 GLN A 116 -38.92 -34.40 REMARK 500 5 PRO A 32 -166.34 -69.75 REMARK 500 5 ASN A 35 93.04 -42.34 REMARK 500 5 SER A 41 -33.25 -37.73 REMARK 500 5 HIS A 61 -33.57 -130.53 REMARK 500 5 SER A 68 171.79 -59.17 REMARK 500 5 VAL A 83 -74.44 -117.16 REMARK 500 5 VAL A 106 -72.19 -47.23 REMARK 500 6 SER A 3 127.95 -170.84 REMARK 500 6 ALA A 9 93.93 -54.32 REMARK 500 6 SER A 11 170.04 -52.79 REMARK 500 6 ARG A 31 96.14 -32.78 REMARK 500 6 ASP A 39 -63.86 -93.78 REMARK 500 6 HIS A 61 -31.14 -38.76 REMARK 500 6 VAL A 106 -73.20 -33.72 REMARK 500 7 SER A 6 102.89 -54.71 REMARK 500 7 VAL A 12 36.78 -84.98 REMARK 500 7 ASP A 13 172.50 -45.98 REMARK 500 7 PRO A 28 10.99 -69.77 REMARK 500 7 LEU A 29 95.50 -29.09 REMARK 500 7 ARG A 34 -53.75 -132.24 REMARK 500 7 SER A 37 -31.43 -39.83 REMARK 500 7 ARG A 38 -67.91 -90.76 REMARK 500 7 TYR A 53 -67.21 -96.46 REMARK 500 7 MET A 60 48.37 -89.38 REMARK 500 7 VAL A 83 -74.38 -116.75 REMARK 500 7 VAL A 106 -59.24 -134.04 REMARK 500 8 SER A 6 126.45 -173.98 REMARK 500 8 ASP A 13 175.38 -51.71 REMARK 500 8 PRO A 28 93.04 -69.83 REMARK 500 8 LEU A 29 77.94 -104.33 REMARK 500 8 LYS A 33 39.27 30.40 REMARK 500 8 ASN A 35 141.16 -32.94 REMARK 500 8 PHE A 40 -31.71 -35.24 REMARK 500 8 MET A 57 -36.85 -36.74 REMARK 500 8 MET A 60 55.60 -95.18 REMARK 500 8 VAL A 83 -74.68 -117.86 REMARK 500 8 VAL A 106 -72.63 -79.58 REMARK 500 8 GLN A 122 -74.65 -63.36 REMARK 500 9 MET A 8 155.86 -49.98 REMARK 500 9 SER A 11 160.24 -39.80 REMARK 500 9 SER A 30 87.64 -56.97 REMARK 500 9 LYS A 33 53.10 -99.66 REMARK 500 9 ASN A 35 139.99 -34.13 REMARK 500 9 VAL A 83 -74.73 -112.06 REMARK 500 10 SER A 2 43.29 -82.10 REMARK 500 10 SER A 5 153.87 -37.22 REMARK 500 10 PRO A 28 96.15 -69.78 REMARK 500 10 LEU A 29 -54.74 -127.15 REMARK 500 10 SER A 30 25.75 39.42 REMARK 500 10 ARG A 34 -70.34 -126.22 REMARK 500 10 PRO A 65 97.42 -69.71 REMARK 500 10 VAL A 83 -76.50 -112.67 REMARK 500 11 SER A 30 38.44 33.99 REMARK 500 11 PRO A 32 -175.95 -69.74 REMARK 500 11 LYS A 33 -70.31 -86.47 REMARK 500 11 ARG A 34 149.76 -33.81 REMARK 500 11 SER A 41 -31.71 -35.56 REMARK 500 11 MET A 57 -39.25 -36.20 REMARK 500 11 HIS A 61 -34.38 -36.26 REMARK 500 11 LEU A 69 -38.29 -38.07 REMARK 500 11 VAL A 83 -69.29 -128.99 REMARK 500 11 LEU A 87 33.01 -92.86 REMARK 500 11 ASN A 88 36.40 37.09 REMARK 500 11 GLN A 101 33.53 -86.78 REMARK 500 11 CYS A 102 38.37 34.69 REMARK 500 11 VAL A 106 -54.50 -134.83 REMARK 500 12 PRO A 28 86.16 -69.79 REMARK 500 12 SER A 30 49.85 -76.79 REMARK 500 12 PRO A 32 97.75 -69.78 REMARK 500 12 LYS A 33 -29.26 -37.39 REMARK 500 12 VAL A 83 -71.90 -112.30 REMARK 500 12 LEU A 87 31.77 -86.43 REMARK 500 12 ASN A 88 38.60 36.22 REMARK 500 13 ASP A 13 175.90 -53.85 REMARK 500 13 LEU A 17 -71.32 -68.39 REMARK 500 13 PRO A 28 99.43 -69.74 REMARK 500 13 SER A 30 98.68 -55.24 REMARK 500 13 PRO A 32 -165.07 -69.74 REMARK 500 13 VAL A 58 -71.85 -53.98 REMARK 500 13 MET A 60 48.82 -78.89 REMARK 500 13 PRO A 65 96.09 -69.80 REMARK 500 13 SER A 68 -178.83 -63.37 REMARK 500 13 VAL A 83 -72.83 -127.16 REMARK 500 13 GLN A 101 36.20 -99.05 REMARK 500 14 TRP A 23 -37.24 -39.98 REMARK 500 14 PRO A 32 -164.25 -69.74 REMARK 500 14 ARG A 34 -178.36 -175.16 REMARK 500 14 ASP A 39 -63.13 -93.80 REMARK 500 14 MET A 57 -26.67 -38.37 REMARK 500 14 MET A 60 31.31 -89.93 REMARK 500 14 LEU A 69 -72.90 -48.09 REMARK 500 14 VAL A 83 -74.38 -108.26 REMARK 500 14 ASN A 88 34.75 38.88 REMARK 500 14 CYS A 102 49.16 39.01 REMARK 500 14 VAL A 106 -74.27 -69.14 REMARK 500 15 SER A 6 42.15 -94.21 REMARK 500 15 SER A 11 173.49 -51.15 REMARK 500 15 ASP A 25 -39.90 -38.72 REMARK 500 15 PRO A 28 82.36 -69.73 REMARK 500 15 PRO A 32 -165.78 -69.75 REMARK 500 15 ASN A 35 173.23 -50.28 REMARK 500 15 ASP A 39 -63.48 -90.86 REMARK 500 15 HIS A 61 -27.81 -38.02 REMARK 500 15 ASN A 62 -64.40 -103.50 REMARK 500 15 VAL A 83 -74.40 -117.92 REMARK 500 15 VAL A 106 -66.08 -106.33 REMARK 500 15 GLN A 122 -73.11 -60.54 REMARK 500 16 GLU A 14 -36.26 -37.12 REMARK 500 16 PRO A 28 8.73 -69.79 REMARK 500 16 LEU A 29 101.41 -29.61 REMARK 500 16 ARG A 31 136.53 -35.44 REMARK 500 16 PRO A 32 -167.49 -69.77 REMARK 500 16 ASN A 35 115.25 -34.95 REMARK 500 16 SER A 41 -37.70 -34.40 REMARK 500 16 VAL A 58 -71.91 -34.59 REMARK 500 16 VAL A 83 -72.27 -109.42 REMARK 500 16 ASN A 88 28.40 44.57 REMARK 500 17 SER A 11 169.35 -45.41 REMARK 500 17 TRP A 23 -38.11 -39.94 REMARK 500 17 LYS A 33 53.36 -94.61 REMARK 500 17 SER A 41 -38.69 -34.30 REMARK 500 17 VAL A 83 -70.01 -123.00 REMARK 500 17 LEU A 87 31.31 -98.20 REMARK 500 17 GLN A 101 32.41 -85.65 REMARK 500 17 CYS A 102 50.26 35.35 REMARK 500 17 LEU A 114 -70.76 -55.01 REMARK 500 17 ARG A 123 174.49 -53.67 REMARK 500 18 SER A 30 91.37 -65.76 REMARK 500 18 ARG A 31 143.98 -173.43 REMARK 500 18 PRO A 32 3.86 -69.71 REMARK 500 18 LYS A 33 39.40 30.27 REMARK 500 18 SER A 41 -39.49 -34.41 REMARK 500 18 GLU A 59 55.96 -104.27 REMARK 500 18 MET A 60 -174.18 -57.62 REMARK 500 18 ASN A 62 -38.17 -133.10 REMARK 500 18 SER A 68 177.26 -53.23 REMARK 500 18 VAL A 83 -75.19 -113.07 REMARK 500 18 LEU A 87 30.14 -84.32 REMARK 500 18 ASN A 88 38.64 37.03 REMARK 500 18 GLN A 101 31.37 -87.28 REMARK 500 18 CYS A 102 41.82 34.43 REMARK 500 18 VAL A 106 -64.43 -132.55 REMARK 500 19 SER A 6 168.94 -48.49 REMARK 500 19 MET A 8 138.80 -174.64 REMARK 500 19 ALA A 9 147.96 -34.67 REMARK 500 19 SER A 30 77.73 -63.10 REMARK 500 19 PRO A 32 -167.33 -69.74 REMARK 500 19 SER A 68 -176.24 -66.49 REMARK 500 19 LEU A 69 -69.28 -92.88 REMARK 500 19 VAL A 83 -74.97 -112.02 REMARK 500 19 PRO A 92 -175.16 -69.75 REMARK 500 19 VAL A 106 -73.27 -83.99 REMARK 500 20 ASP A 13 173.84 -46.67 REMARK 500 20 PRO A 28 -91.59 -69.72 REMARK 500 20 PRO A 32 -169.39 -69.77 REMARK 500 20 ASN A 35 95.34 -68.34 REMARK 500 20 VAL A 44 -66.38 -120.17 REMARK 500 20 VAL A 83 -73.35 -115.22 REMARK 500 20 ASN A 88 25.87 42.74 REMARK 500 20 ARG A 124 90.90 -62.64 REMARK 500 REMARK 500 REMARK: NULL
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSI002011253.1 RELATED DB: TARGETDB
DBREF 2EE7 A 8 127 UNP Q9Y4P9 SPEF1_HUMAN 1 120
SEQADV 2EE7 GLY A 1 UNP Q9Y4P9 EXPRESSION TAG SEQADV 2EE7 SER A 2 UNP Q9Y4P9 EXPRESSION TAG SEQADV 2EE7 SER A 3 UNP Q9Y4P9 EXPRESSION TAG SEQADV 2EE7 GLY A 4 UNP Q9Y4P9 EXPRESSION TAG SEQADV 2EE7 SER A 5 UNP Q9Y4P9 EXPRESSION TAG SEQADV 2EE7 SER A 6 UNP Q9Y4P9 EXPRESSION TAG SEQADV 2EE7 GLY A 7 UNP Q9Y4P9 EXPRESSION TAG
SEQRES 1 A 127 GLY SER SER GLY SER SER GLY MET ALA SER SER VAL ASP SEQRES 2 A 127 GLU GLU ALA LEU HIS GLN LEU TYR LEU TRP VAL ASP ASN SEQRES 3 A 127 ILE PRO LEU SER ARG PRO LYS ARG ASN LEU SER ARG ASP SEQRES 4 A 127 PHE SER ASP GLY VAL LEU VAL ALA GLU VAL ILE LYS PHE SEQRES 5 A 127 TYR PHE PRO LYS MET VAL GLU MET HIS ASN TYR VAL PRO SEQRES 6 A 127 ALA ASN SER LEU GLN GLN LYS LEU SER ASN TRP GLY HIS SEQRES 7 A 127 LEU ASN ARG LYS VAL LEU LYS ARG LEU ASN PHE SER VAL SEQRES 8 A 127 PRO ASP ASP VAL MET ARG LYS ILE ALA GLN CYS ALA PRO SEQRES 9 A 127 GLY VAL VAL GLU LEU VAL LEU ILE PRO LEU ARG GLN ARG SEQRES 10 A 127 LEU GLU GLU ARG GLN ARG ARG ARG LYS GLN
HELIX 1 1 ASP A 13 ILE A 27 1 15 HELIX 2 2 ASN A 35 SER A 41 1 7 HELIX 3 3 GLY A 43 PHE A 54 1 12 HELIX 4 4 SER A 68 VAL A 83 1 16 HELIX 5 5 LEU A 84 ASN A 88 5 5 HELIX 6 6 PRO A 92 GLN A 101 1 10 HELIX 7 7 VAL A 107 ARG A 124 1 18
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000