10 20 30 40 50 60 70 80 2EDY - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER SIGNALING PROTEIN 15-FEB-07 2EDY
TITLE SOLUTION STRUCTURES OF THE FN3 DOMAIN OF HUMAN RECEPTOR- TITLE 2 TYPE TYROSINE-PROTEIN PHOSPHATASE F
COMPND MOL_ID: 1; COMPND 2 MOLECULE: RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE F; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: FIBRONECTIN TYPE III DOMAIN; COMPND 5 SYNONYM: LAR PROTEIN, LEUKOCYTE ANTIGEN RELATED; COMPND 6 EC: 3.1.3.48; COMPND 7 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PTPRF; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P060123-21; SOURCE 8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS
KEYWDS EC 3.1.3.48, LAR PROTEIN, LEUKOCYTE ANTIGEN RELATED, KEYWDS 2 STRUCTURAL GENOMICS, NPPSFA, NATIONAL PROJECT ON PROTEIN KEYWDS 3 STRUCTURAL AND FUNCTIONAL ANALYSES, RIKEN STRUCTURAL KEYWDS 4 GENOMICS/PROTEOMICS INITIATIVE, RSGI, SIGNALING PROTEIN
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR M.SATO,S.KOSHIBA,S.WATANABE,T.HARADA,T.KIGAWA,S.YOKOYAMA, AUTHOR 2 RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI)
REVDAT 2 24-FEB-09 2EDY 1 VERSN REVDAT 1 21-AUG-07 2EDY 0
JRNL AUTH M.SATO,S.KOSHIBA,S.WATANABE,T.HARADA,T.KIGAWA, JRNL AUTH 2 S.YOKOYAMA JRNL TITL SOLUTION STRUCTURES OF THE FN3 DOMAIN OF HUMAN JRNL TITL 2 RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE F JRNL REF TO BE PUBLISHED JRNL REFN
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 2.0.17 REMARK 3 AUTHORS : GUNTERT, P. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 2EDY COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 22-FEB-07. REMARK 100 THE RCSB ID CODE IS RCSB026545.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1MM FN3 DOMAIN U-15N, 13C; REMARK 210 20MM D-TRIS HCL; 100MM NACL; REMARK 210 1MM D-DTT; 0.02% NAN3; 90% REMARK 210 H2O, 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY, 3D_ REMARK 210 15N-SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 700 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR 3.5, NMRPIPE REMARK 210 20031121, NMRVIEW 2.0.17, REMARK 210 KUJIRA 0.932, CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS, TARGET REMARK 210 FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ALA A 28 107.92 -167.05 REMARK 500 1 ASN A 38 39.59 -89.37 REMARK 500 1 ILE A 42 -34.70 -130.99 REMARK 500 1 ASP A 78 98.39 -68.02 REMARK 500 1 SER A 95 152.35 -48.92 REMARK 500 1 THR A 100 154.89 -44.45 REMARK 500 2 PRO A 12 -179.16 -69.72 REMARK 500 2 ALA A 28 110.46 -167.70 REMARK 500 2 ARG A 37 100.09 -35.63 REMARK 500 2 ASP A 78 98.19 -66.16 REMARK 500 2 THR A 100 152.09 -42.92 REMARK 500 2 PRO A 102 91.83 -69.74 REMARK 500 3 SER A 5 110.92 -163.28 REMARK 500 3 ALA A 28 109.64 -164.75 REMARK 500 3 ARG A 37 168.95 -44.75 REMARK 500 3 ASP A 78 97.53 -66.75 REMARK 500 3 SER A 95 150.25 -46.18 REMARK 500 3 PRO A 102 98.78 -69.73 REMARK 500 4 ALA A 28 107.16 -169.36 REMARK 500 4 GLU A 36 47.99 -101.48 REMARK 500 4 ASN A 38 49.20 -81.89 REMARK 500 4 PRO A 91 -176.87 -69.79 REMARK 500 4 SER A 95 156.45 -45.47 REMARK 500 4 THR A 100 158.62 -40.06 REMARK 500 5 HIS A 16 -176.20 -171.27 REMARK 500 5 ALA A 28 105.00 -167.15 REMARK 500 5 ASP A 78 96.21 -64.88 REMARK 500 5 THR A 100 155.67 -42.54 REMARK 500 6 SER A 2 42.31 -81.56 REMARK 500 6 SER A 6 -66.05 -102.32 REMARK 500 6 ALA A 28 107.35 -167.49 REMARK 500 6 GLU A 36 50.69 -110.07 REMARK 500 6 SER A 95 155.28 -42.90 REMARK 500 6 THR A 100 151.19 -41.82 REMARK 500 7 SER A 2 102.27 -49.84 REMARK 500 7 ALA A 28 109.22 -166.02 REMARK 500 7 ILE A 42 -33.64 -131.50 REMARK 500 7 ASP A 78 96.67 -66.83 REMARK 500 7 THR A 100 151.89 -43.65 REMARK 500 8 SER A 5 43.62 34.82 REMARK 500 8 ALA A 28 107.37 -167.07 REMARK 500 8 GLU A 36 54.91 -111.90 REMARK 500 8 SER A 43 -179.60 -172.59 REMARK 500 8 ASP A 78 96.84 -67.02 REMARK 500 8 SER A 86 -27.11 -38.55 REMARK 500 8 PRO A 91 -178.67 -69.80 REMARK 500 8 THR A 100 156.49 -43.49 REMARK 500 8 PRO A 102 96.88 -69.74 REMARK 500 9 ALA A 28 110.74 -168.06 REMARK 500 9 ASN A 38 43.70 -109.14 REMARK 500 9 ASP A 78 94.54 -66.75 REMARK 500 9 THR A 100 164.76 -45.03 REMARK 500 9 PRO A 102 97.40 -69.77 REMARK 500 10 ALA A 28 112.03 -163.29 REMARK 500 10 VAL A 33 134.73 -36.13 REMARK 500 10 ASP A 78 98.12 -66.17 REMARK 500 10 PRO A 91 -174.01 -69.71 REMARK 500 10 PRO A 102 99.83 -69.69 REMARK 500 11 SER A 3 39.93 -88.15 REMARK 500 11 ALA A 28 109.29 -164.18 REMARK 500 11 LEU A 34 -33.95 -37.59 REMARK 500 11 ASN A 38 35.83 -88.98 REMARK 500 11 LEU A 68 176.55 -55.64 REMARK 500 11 ASP A 78 92.92 -64.60 REMARK 500 11 PRO A 91 -179.72 -69.76 REMARK 500 11 SER A 95 155.78 -47.23 REMARK 500 11 THR A 100 154.01 -42.52 REMARK 500 11 PRO A 102 95.09 -69.71 REMARK 500 12 SER A 3 43.48 -84.15 REMARK 500 12 SER A 9 46.73 -109.82 REMARK 500 12 ALA A 28 108.18 -168.68 REMARK 500 12 LEU A 34 -32.94 -34.27 REMARK 500 12 ASP A 78 97.91 -61.36 REMARK 500 12 THR A 100 160.43 -40.38 REMARK 500 12 PRO A 102 88.23 -69.74 REMARK 500 13 SER A 5 42.01 -107.84 REMARK 500 13 ALA A 28 106.06 -167.05 REMARK 500 13 VAL A 33 127.00 -34.37 REMARK 500 13 GLU A 36 73.59 -100.55 REMARK 500 13 ASN A 38 -36.19 -38.74 REMARK 500 13 PRO A 91 -178.65 -69.76 REMARK 500 13 SER A 95 154.01 -48.36 REMARK 500 13 THR A 100 152.23 -45.40 REMARK 500 13 PRO A 102 93.02 -69.76 REMARK 500 14 ALA A 28 106.10 -171.82 REMARK 500 14 ASN A 38 32.75 -91.12 REMARK 500 14 ASP A 78 94.44 -65.99 REMARK 500 14 THR A 100 155.57 -40.16 REMARK 500 14 PRO A 102 98.39 -69.72 REMARK 500 15 ALA A 28 107.31 -164.72 REMARK 500 15 VAL A 33 136.83 -34.81 REMARK 500 15 LEU A 34 -28.30 -39.84 REMARK 500 15 ALA A 35 -73.17 -63.45 REMARK 500 15 GLU A 36 95.75 -67.46 REMARK 500 15 ARG A 37 108.94 -162.32 REMARK 500 15 ASN A 38 35.78 -92.08 REMARK 500 15 ASP A 78 97.09 -63.99 REMARK 500 15 THR A 100 152.28 -41.56 REMARK 500 15 PRO A 102 96.82 -69.77 REMARK 500 16 HIS A 16 -177.87 -171.01 REMARK 500 16 ALA A 28 106.31 -166.43 REMARK 500 16 ARG A 37 108.49 -35.24 REMARK 500 16 ASP A 78 98.41 -64.43 REMARK 500 16 PRO A 91 -179.90 -69.75 REMARK 500 16 SER A 95 152.06 -48.84 REMARK 500 16 THR A 100 156.47 -42.52 REMARK 500 17 SER A 6 -55.26 -125.25 REMARK 500 17 ALA A 28 110.38 -169.06 REMARK 500 17 GLU A 36 61.67 -112.86 REMARK 500 17 ILE A 42 -32.61 -131.53 REMARK 500 17 ASP A 78 97.63 -66.79 REMARK 500 17 THR A 100 166.98 -43.41 REMARK 500 17 PRO A 102 98.86 -69.72 REMARK 500 18 SER A 2 158.16 -43.08 REMARK 500 18 SER A 3 150.54 -43.03 REMARK 500 18 ALA A 28 105.24 -167.01 REMARK 500 18 LEU A 34 -33.15 -36.23 REMARK 500 18 ASN A 38 32.32 -90.95 REMARK 500 18 ASP A 78 98.93 -60.99 REMARK 500 18 PRO A 91 -177.59 -69.78 REMARK 500 18 THR A 100 154.91 -43.16 REMARK 500 18 PRO A 102 99.29 -69.78 REMARK 500 19 ALA A 28 105.07 -166.03 REMARK 500 19 GLU A 36 -73.64 -55.99 REMARK 500 19 ARG A 37 103.54 -37.41 REMARK 500 19 ASP A 78 97.52 -67.04 REMARK 500 19 PRO A 91 -179.71 -69.71 REMARK 500 19 SER A 93 154.72 -47.49 REMARK 500 19 SER A 95 150.41 -49.81 REMARK 500 19 THR A 100 154.13 -45.35 REMARK 500 19 PRO A 102 98.32 -69.75 REMARK 500 20 HIS A 16 -178.98 -170.30 REMARK 500 20 ALA A 28 105.51 -169.75 REMARK 500 20 ARG A 37 115.91 -39.46 REMARK 500 20 ILE A 51 -9.90 -59.86 REMARK 500 20 ASP A 78 98.78 -66.78 REMARK 500 20 SER A 95 163.78 -43.66 REMARK 500 20 THR A 100 154.56 -41.47 REMARK 500 20 PRO A 102 98.03 -69.79 REMARK 500 REMARK 500 REMARK: NULL
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSK003001516.3 RELATED DB: TARGETDB
DBREF 2EDY A 8 103 UNP P10586 PTPRF_HUMAN 905 1000
SEQADV 2EDY GLY A 1 UNP P10586 EXPRESSION TAG SEQADV 2EDY SER A 2 UNP P10586 EXPRESSION TAG SEQADV 2EDY SER A 3 UNP P10586 EXPRESSION TAG SEQADV 2EDY GLY A 4 UNP P10586 EXPRESSION TAG SEQADV 2EDY SER A 5 UNP P10586 EXPRESSION TAG SEQADV 2EDY SER A 6 UNP P10586 EXPRESSION TAG SEQADV 2EDY GLY A 7 UNP P10586 EXPRESSION TAG
SEQRES 1 A 103 GLY SER SER GLY SER SER GLY PRO SER GLY PHE PRO GLN SEQRES 2 A 103 ASN LEU HIS VAL THR GLY LEU THR THR SER THR THR GLU SEQRES 3 A 103 LEU ALA TRP ASP PRO PRO VAL LEU ALA GLU ARG ASN GLY SEQRES 4 A 103 ARG ILE ILE SER TYR THR VAL VAL PHE ARG ASP ILE ASN SEQRES 5 A 103 SER GLN GLN GLU LEU GLN ASN ILE THR THR ASP THR ARG SEQRES 6 A 103 PHE THR LEU THR GLY LEU LYS PRO ASP THR THR TYR ASP SEQRES 7 A 103 ILE LYS VAL ARG ALA TRP THR SER LYS GLY SER GLY PRO SEQRES 8 A 103 LEU SER PRO SER ILE GLN SER ARG THR MET PRO VAL
SHEET 1 A 2 GLN A 13 HIS A 16 0 SHEET 2 A 2 ALA A 28 ASP A 30 -1 O ASP A 30 N GLN A 13 SHEET 1 B 2 THR A 25 GLU A 26 0 SHEET 2 B 2 THR A 67 LEU A 68 -1 O LEU A 68 N THR A 25 SHEET 1 C 3 GLU A 56 THR A 61 0 SHEET 2 C 3 SER A 43 ASP A 50 -1 N PHE A 48 O LEU A 57 SHEET 3 C 3 TYR A 77 LYS A 80 -1 O ASP A 78 N ARG A 49 SHEET 1 D 3 GLU A 56 THR A 61 0 SHEET 2 D 3 SER A 43 ASP A 50 -1 N PHE A 48 O LEU A 57 SHEET 3 D 3 ALA A 83 TRP A 84 -1 O TRP A 84 N SER A 43
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000