10 20 30 40 50 60 70 80 2EDX - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER SIGNALING PROTEIN 15-FEB-07 2EDX
TITLE SOLUTION STRUCTURES OF THE FN3 DOMAIN OF HUMAN RECEPTOR- TITLE 2 TYPE TYROSINE-PROTEIN PHOSPHATASE F
COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN TYROSINE PHOSPHATASE, RECEPTOR TYPE, F; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: FIBRONECTIN TYPE III DOMAIN; COMPND 5 SYNONYM: RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE F; COMPND 6 EC: 3.1.3.48; COMPND 7 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PTPRF; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P051003-06; SOURCE 8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS
KEYWDS EC 3.1.3.48, LAR PROTEIN, LEUKOCYTE ANTIGEN RELATED, KEYWDS 2 STRUCTURAL GENOMICS, NPPSFA, NATIONAL PROJECT ON PROTEIN KEYWDS 3 STRUCTURAL AND FUNCTIONAL ANALYSES, RIKEN STRUCTURAL KEYWDS 4 GENOMICS/PROTEOMICS INITIATIVE, RSGI, SIGNALING PROTEIN
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR M.SATO,S.KOSHIBA,M.INOUE,T.KIGAWA,S.YOKOYAMA,RIKEN AUTHOR 2 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI)
REVDAT 2 24-FEB-09 2EDX 1 VERSN REVDAT 1 21-AUG-07 2EDX 0
JRNL AUTH M.SATO,S.KOSHIBA,M.INOUE,T.KIGAWA,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURES OF THE FN3 DOMAIN OF HUMAN JRNL TITL 2 RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE F JRNL REF TO BE PUBLISHED JRNL REFN
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 2.0.17 REMARK 3 AUTHORS : GUNTERT, P. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 2EDX COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 22-FEB-07. REMARK 100 THE RCSB ID CODE IS RCSB026544.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.7MM FN3 DOMAIN U-15N, 13C; REMARK 210 20MM D-TRIS HCL; 100MM NACL; REMARK 210 1MM D-DTT; 0.02% NAN3; 90% REMARK 210 H2O, 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY, 3D_ REMARK 210 15N-SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 700 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR 3.5, NMRPIPE REMARK 210 20031121, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.932, CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS, TARGET REMARK 210 FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 2 114.53 -161.53 REMARK 500 1 ALA A 14 145.14 -36.13 REMARK 500 1 GLN A 15 -62.39 -107.71 REMARK 500 1 SER A 46 57.73 -117.61 REMARK 500 1 ASP A 116 159.41 -49.14 REMARK 500 1 PRO A 120 3.36 -69.81 REMARK 500 1 GLU A 128 143.77 -173.72 REMARK 500 1 PRO A 131 -174.12 -69.74 REMARK 500 2 GLU A 10 132.25 -170.07 REMARK 500 2 LYS A 24 44.53 34.21 REMARK 500 2 PRO A 43 87.23 -69.73 REMARK 500 2 ASP A 45 107.20 -56.63 REMARK 500 2 ARG A 47 -175.35 -55.08 REMARK 500 2 THR A 115 162.67 -49.45 REMARK 500 2 PRO A 120 3.32 -69.69 REMARK 500 2 PRO A 131 -176.21 -69.77 REMARK 500 3 ALA A 14 -177.22 -54.39 REMARK 500 3 PRO A 120 3.58 -69.70 REMARK 500 3 PRO A 124 -176.41 -69.77 REMARK 500 3 PRO A 131 -178.27 -69.78 REMARK 500 3 SER A 132 -62.25 -96.44 REMARK 500 4 ALA A 14 -176.80 -58.49 REMARK 500 4 SER A 19 -62.20 -98.93 REMARK 500 4 PRO A 43 -168.68 -69.73 REMARK 500 4 SER A 46 47.70 -102.51 REMARK 500 4 PRO A 120 3.09 -69.81 REMARK 500 4 ARG A 125 145.83 -35.49 REMARK 500 4 LYS A 126 148.50 -36.12 REMARK 500 4 GLU A 128 151.77 -47.76 REMARK 500 4 SER A 129 107.87 -42.11 REMARK 500 4 SER A 133 152.78 -43.37 REMARK 500 5 ILE A 9 105.39 -54.01 REMARK 500 5 ARG A 12 117.66 -174.41 REMARK 500 5 PRO A 43 -176.24 -69.80 REMARK 500 5 THR A 115 162.72 -49.74 REMARK 500 5 PRO A 120 3.30 -69.72 REMARK 500 5 PRO A 131 -178.30 -69.75 REMARK 500 6 THR A 8 160.64 -47.93 REMARK 500 6 PRO A 104 -179.42 -69.75 REMARK 500 6 PRO A 120 3.68 -69.74 REMARK 500 6 LYS A 126 87.34 -49.79 REMARK 500 7 SER A 19 -61.73 -103.07 REMARK 500 7 VAL A 25 107.63 -59.53 REMARK 500 7 ARG A 47 179.06 -57.29 REMARK 500 7 ILE A 51 92.76 -62.47 REMARK 500 7 ASP A 116 154.50 -38.49 REMARK 500 7 PRO A 120 2.26 -69.80 REMARK 500 8 THR A 8 139.99 -38.01 REMARK 500 8 THR A 13 59.60 -94.35 REMARK 500 8 LYS A 24 46.37 31.69 REMARK 500 8 THR A 115 165.91 -48.19 REMARK 500 8 PRO A 120 3.33 -69.75 REMARK 500 8 SER A 121 165.83 -42.82 REMARK 500 8 PRO A 124 -171.76 -69.79 REMARK 500 8 VAL A 127 43.18 -96.02 REMARK 500 9 SER A 2 50.84 34.94 REMARK 500 9 SER A 5 -53.72 -127.77 REMARK 500 9 ALA A 14 175.26 -48.39 REMARK 500 9 PRO A 104 -170.68 -69.74 REMARK 500 9 ASP A 116 151.20 -48.70 REMARK 500 9 PRO A 120 3.40 -69.75 REMARK 500 9 SER A 132 135.19 -37.01 REMARK 500 10 SER A 3 149.84 -35.14 REMARK 500 10 SER A 6 119.40 -36.42 REMARK 500 10 ILE A 9 148.37 -37.49 REMARK 500 10 SER A 19 -61.96 -106.48 REMARK 500 10 LYS A 24 36.59 38.12 REMARK 500 10 VAL A 40 136.81 -39.09 REMARK 500 10 PRO A 120 3.77 -69.74 REMARK 500 10 ARG A 125 91.71 -56.70 REMARK 500 10 GLU A 128 39.88 34.59 REMARK 500 10 SER A 129 -179.53 -174.26 REMARK 500 10 PRO A 131 1.95 -69.72 REMARK 500 10 SER A 132 119.32 -38.37 REMARK 500 11 ILE A 9 -175.66 -51.37 REMARK 500 11 PRO A 120 3.31 -69.70 REMARK 500 11 SER A 121 126.82 -35.38 REMARK 500 11 PRO A 131 94.36 -69.76 REMARK 500 12 THR A 13 -63.98 -127.11 REMARK 500 12 GLN A 15 -74.19 -90.41 REMARK 500 12 LYS A 24 50.86 36.72 REMARK 500 12 PRO A 106 -165.58 -69.81 REMARK 500 12 PRO A 120 3.54 -69.74 REMARK 500 12 PRO A 124 91.11 -69.71 REMARK 500 12 VAL A 127 108.96 -38.05 REMARK 500 13 ALA A 14 -177.85 -174.09 REMARK 500 13 LYS A 24 39.84 38.88 REMARK 500 13 ALA A 44 45.09 -79.58 REMARK 500 13 THR A 115 160.05 -44.17 REMARK 500 13 PRO A 120 3.24 -69.73 REMARK 500 13 LYS A 126 53.64 73.55 REMARK 500 14 THR A 8 119.91 -34.11 REMARK 500 14 ILE A 9 164.38 -45.42 REMARK 500 14 SER A 19 -61.81 -103.15 REMARK 500 14 PRO A 43 -165.43 -69.71 REMARK 500 14 ASP A 45 -74.84 -133.51 REMARK 500 14 ASN A 48 34.44 33.60 REMARK 500 14 GLU A 107 -178.12 -57.54 REMARK 500 14 THR A 115 155.32 -46.94 REMARK 500 14 PRO A 120 4.92 -69.83 REMARK 500 14 SER A 121 -39.46 -31.49 REMARK 500 14 PRO A 124 -176.56 -69.81 REMARK 500 15 SER A 5 111.45 -169.73 REMARK 500 15 SER A 6 89.04 -68.00 REMARK 500 15 SER A 19 -69.45 -120.02 REMARK 500 15 LYS A 24 43.71 36.62 REMARK 500 15 PRO A 43 -171.44 -69.71 REMARK 500 15 SER A 46 57.19 -111.23 REMARK 500 15 GLU A 107 -178.28 -69.74 REMARK 500 15 SER A 109 109.91 -59.43 REMARK 500 15 PRO A 120 3.29 -69.74 REMARK 500 15 VAL A 127 155.24 -40.24 REMARK 500 16 SER A 5 92.19 -67.66 REMARK 500 16 SER A 16 -74.95 -115.75 REMARK 500 16 SER A 19 -70.27 -102.40 REMARK 500 16 PRO A 43 -171.21 -69.85 REMARK 500 16 SER A 46 54.05 34.08 REMARK 500 16 PRO A 106 -179.19 -69.74 REMARK 500 16 PRO A 120 3.25 -69.74 REMARK 500 17 THR A 8 74.46 -103.74 REMARK 500 17 THR A 13 98.22 -34.24 REMARK 500 17 ALA A 14 159.57 -47.58 REMARK 500 17 THR A 17 151.91 -44.99 REMARK 500 17 SER A 19 -67.87 -106.71 REMARK 500 17 VAL A 25 109.82 -59.36 REMARK 500 17 ALA A 44 -36.66 -38.27 REMARK 500 17 ILE A 51 91.45 -41.25 REMARK 500 17 PRO A 120 3.18 -69.71 REMARK 500 17 VAL A 127 108.25 -53.12 REMARK 500 18 SER A 19 -64.29 -102.95 REMARK 500 18 VAL A 25 107.89 -59.74 REMARK 500 18 PRO A 43 0.96 -69.69 REMARK 500 18 ALA A 44 36.93 71.41 REMARK 500 18 ARG A 47 146.40 -39.13 REMARK 500 18 PRO A 120 3.84 -69.77 REMARK 500 18 PRO A 124 14.00 -69.79 REMARK 500 18 ARG A 125 172.16 -53.51 REMARK 500 19 ARG A 12 131.75 -39.45 REMARK 500 19 GLN A 15 -61.13 -96.05 REMARK 500 19 PRO A 104 -169.58 -69.79 REMARK 500 19 PRO A 120 4.22 -69.84 REMARK 500 19 PRO A 124 13.50 -69.76 REMARK 500 20 ALA A 11 96.88 -65.98 REMARK 500 20 THR A 13 132.45 -36.57 REMARK 500 20 GLN A 15 -32.21 -131.35 REMARK 500 20 SER A 16 -50.49 -132.02 REMARK 500 20 SER A 19 -69.10 -108.11 REMARK 500 20 ARG A 47 136.85 -172.32 REMARK 500 20 GLN A 53 149.09 -174.83 REMARK 500 20 PRO A 120 3.32 -69.69 REMARK 500 20 ARG A 125 156.12 -46.08 REMARK 500 20 SER A 133 42.01 -100.93 REMARK 500 REMARK 500 REMARK: NULL
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSK003001516.2 RELATED DB: TARGETDB
DBREF 2EDX A 8 128 UNP Q5T022 Q5T022_HUMAN 596 716
SEQADV 2EDX GLY A 1 UNP Q5T022 CLONING ARTIFACT SEQADV 2EDX SER A 2 UNP Q5T022 CLONING ARTIFACT SEQADV 2EDX SER A 3 UNP Q5T022 CLONING ARTIFACT SEQADV 2EDX GLY A 4 UNP Q5T022 CLONING ARTIFACT SEQADV 2EDX SER A 5 UNP Q5T022 CLONING ARTIFACT SEQADV 2EDX SER A 6 UNP Q5T022 CLONING ARTIFACT SEQADV 2EDX GLY A 7 UNP Q5T022 CLONING ARTIFACT SEQADV 2EDX SER A 129 UNP Q5T022 CLONING ARTIFACT SEQADV 2EDX GLY A 130 UNP Q5T022 CLONING ARTIFACT SEQADV 2EDX PRO A 131 UNP Q5T022 CLONING ARTIFACT SEQADV 2EDX SER A 132 UNP Q5T022 CLONING ARTIFACT SEQADV 2EDX SER A 133 UNP Q5T022 CLONING ARTIFACT SEQADV 2EDX GLY A 134 UNP Q5T022 CLONING ARTIFACT
SEQRES 1 A 134 GLY SER SER GLY SER SER GLY THR ILE GLU ALA ARG THR SEQRES 2 A 134 ALA GLN SER THR PRO SER ALA PRO PRO GLN LYS VAL MET SEQRES 3 A 134 CYS VAL SER MET GLY SER THR THR VAL ARG VAL SER TRP SEQRES 4 A 134 VAL PRO PRO PRO ALA ASP SER ARG ASN GLY VAL ILE THR SEQRES 5 A 134 GLN TYR SER VAL ALA TYR GLU ALA VAL ASP GLY GLU ASP SEQRES 6 A 134 ARG GLY ARG HIS VAL VAL ASP GLY ILE SER ARG GLU HIS SEQRES 7 A 134 SER SER TRP ASP LEU VAL GLY LEU GLU LYS TRP THR GLU SEQRES 8 A 134 TYR ARG VAL TRP VAL ARG ALA HIS THR ASP VAL GLY PRO SEQRES 9 A 134 GLY PRO GLU SER SER PRO VAL LEU VAL ARG THR ASP GLU SEQRES 10 A 134 ASP VAL PRO SER GLY PRO PRO ARG LYS VAL GLU SER GLY SEQRES 11 A 134 PRO SER SER GLY
SHEET 1 A 3 GLN A 23 VAL A 28 0 SHEET 2 A 3 THR A 34 VAL A 40 -1 O ARG A 36 N VAL A 28 SHEET 3 A 3 SER A 80 VAL A 84 -1 O LEU A 83 N VAL A 35 SHEET 1 B 4 HIS A 69 VAL A 71 0 SHEET 2 B 4 ILE A 51 ALA A 60 -1 N VAL A 56 O VAL A 71 SHEET 3 B 4 GLU A 91 THR A 100 -1 O TRP A 95 N ALA A 57 SHEET 4 B 4 VAL A 111 ARG A 114 -1 O VAL A 113 N TYR A 92
CISPEP 1 PRO A 21 PRO A 22 1 -0.01 CISPEP 2 PRO A 21 PRO A 22 2 -0.06 CISPEP 3 PRO A 21 PRO A 22 3 -0.08 CISPEP 4 PRO A 21 PRO A 22 4 -0.10 CISPEP 5 PRO A 21 PRO A 22 5 -0.09 CISPEP 6 PRO A 21 PRO A 22 6 -0.11 CISPEP 7 PRO A 21 PRO A 22 7 -0.03 CISPEP 8 PRO A 21 PRO A 22 8 -0.14 CISPEP 9 PRO A 21 PRO A 22 9 -0.05 CISPEP 10 PRO A 21 PRO A 22 10 -0.10 CISPEP 11 PRO A 21 PRO A 22 11 -0.03 CISPEP 12 PRO A 21 PRO A 22 12 -0.06 CISPEP 13 PRO A 21 PRO A 22 13 -0.03 CISPEP 14 PRO A 21 PRO A 22 14 0.00 CISPEP 15 PRO A 21 PRO A 22 15 -0.07 CISPEP 16 PRO A 21 PRO A 22 16 -0.11 CISPEP 17 PRO A 21 PRO A 22 17 -0.01 CISPEP 18 PRO A 21 PRO A 22 18 -0.08 CISPEP 19 PRO A 21 PRO A 22 19 -0.04 CISPEP 20 PRO A 21 PRO A 22 20 -0.13
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000