10 20 30 40 50 60 70 80 2EDE - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER APOPTOSIS 14-FEB-07 2EDE
TITLE SOLUTION STRUCTURE OF THE SIXTH FIBRONECTIN TYPE III DOMAIN TITLE 2 OF HUMAN NETRIN RECEPTOR DCC
COMPND MOL_ID: 1; COMPND 2 MOLECULE: NETRIN RECEPTOR DCC; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: SIXTH FN3 DOMAIN; COMPND 5 SYNONYM: TUMOR SUPPRESSOR PROTEIN DCC, COLORECTAL CANCER COMPND 6 SUPPRESSOR; COMPND 7 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: DCC; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P050905-24; SOURCE 8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS
KEYWDS TUMOR SUPPRESSOR PROTEIN DCC, COLORECTAL CANCER SUPPRESSOR, KEYWDS 2 STRUCTURAL GENOMICS, NPPSFA, NATIONAL PROJECT ON PROTEIN KEYWDS 3 STRUCTURAL AND FUNCTIONAL ANALYSES, RIKEN STRUCTURAL KEYWDS 4 GENOMICS/PROTEOMICS INITIATIVE, RSGI, APOPTOSIS
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR N.TOCHIO,S.KOSHIBA,T.TOMIZAWA,M.YONEYAMA,T.KIGAWA, AUTHOR 2 S.YOKOYAMA,RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE AUTHOR 3 (RSGI)
REVDAT 2 24-FEB-09 2EDE 1 VERSN REVDAT 1 04-MAR-08 2EDE 0
JRNL AUTH N.TOCHIO,S.KOSHIBA,T.TOMIZAWA,M.YONEYAMA,T.KIGAWA, JRNL AUTH 2 S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE SIXTH FIBRONECTIN TYPE JRNL TITL 2 III DOMAIN OF HUMAN NETRIN RECEPTOR DCC JRNL REF TO BE PUBLISHED JRNL REFN
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 2.0.17 REMARK 3 AUTHORS : GUNTERT, P. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 2EDE COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 20-FEB-07. REMARK 100 THE RCSB ID CODE IS RCSB026525.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 296 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.3MM SAMPLE U-15N,13C; 20MM REMARK 210 D-TRIS-HCL; 100MM NACL; 1MM D- REMARK 210 DTT; 0.02% NAN3; 90% H2O, 10% REMARK 210 D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY, 3D_ REMARK 210 15N-SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR 3.5, NMRPIPE REMARK 210 20031121, NMNMRVIEW 5.0.4, REMARK 210 KUJIRA 0.955, CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS, TARGET REMARK 210 FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 3 40.87 -99.55 REMARK 500 1 SER A 6 -60.16 -104.32 REMARK 500 1 LEU A 15 97.63 -69.27 REMARK 500 1 LYS A 40 137.29 -33.79 REMARK 500 1 ILE A 56 -26.62 -38.23 REMARK 500 1 TRP A 59 172.46 -57.82 REMARK 500 1 ASP A 75 52.64 72.76 REMARK 500 1 LYS A 92 -71.58 -81.59 REMARK 500 1 PRO A 96 -177.42 -69.76 REMARK 500 1 LEU A 106 167.59 -46.65 REMARK 500 1 PRO A 111 2.68 -69.76 REMARK 500 1 SER A 112 48.60 74.51 REMARK 500 2 SER A 5 124.63 -39.49 REMARK 500 2 GLU A 36 44.62 -87.25 REMARK 500 2 ASN A 38 29.66 41.23 REMARK 500 2 ILE A 56 -25.12 -39.89 REMARK 500 2 TRP A 59 -179.75 -57.58 REMARK 500 2 ASP A 75 49.81 70.99 REMARK 500 2 SER A 91 -31.46 -38.62 REMARK 500 2 PRO A 96 -163.22 -69.79 REMARK 500 2 PRO A 111 86.87 -69.76 REMARK 500 3 GLU A 36 32.21 -84.34 REMARK 500 3 ASN A 38 25.75 49.75 REMARK 500 3 LYS A 40 109.40 -34.98 REMARK 500 3 ILE A 56 -25.69 -38.94 REMARK 500 3 TRP A 59 179.82 -58.07 REMARK 500 3 ASP A 75 52.84 72.28 REMARK 500 3 SER A 91 -29.84 -39.93 REMARK 500 3 PRO A 96 -163.20 -69.72 REMARK 500 3 LEU A 106 165.88 -49.87 REMARK 500 4 GLU A 36 40.05 -84.95 REMARK 500 4 ASN A 38 48.15 35.52 REMARK 500 4 ILE A 56 -27.76 -39.80 REMARK 500 4 TRP A 59 176.56 -54.20 REMARK 500 4 SER A 91 -32.20 -37.93 REMARK 500 4 PRO A 96 -170.00 -69.79 REMARK 500 4 THR A 105 171.87 -59.42 REMARK 500 4 PRO A 111 86.82 -69.69 REMARK 500 4 SER A 112 42.21 -84.47 REMARK 500 5 LEU A 15 98.26 -69.84 REMARK 500 5 TRP A 31 -177.78 -174.76 REMARK 500 5 GLU A 36 30.03 -84.41 REMARK 500 5 ILE A 56 -26.96 -39.80 REMARK 500 5 TRP A 59 174.47 -56.63 REMARK 500 5 ASP A 75 51.26 73.25 REMARK 500 5 SER A 91 -32.86 -38.17 REMARK 500 5 THR A 105 171.68 -56.15 REMARK 500 6 GLU A 36 41.08 -91.13 REMARK 500 6 ILE A 56 -26.69 -38.24 REMARK 500 6 TRP A 59 174.71 -56.70 REMARK 500 6 SER A 91 -29.93 -38.48 REMARK 500 6 LYS A 92 -70.18 -73.97 REMARK 500 6 PRO A 96 -168.93 -69.77 REMARK 500 6 LEU A 106 -179.83 -53.72 REMARK 500 7 TRP A 31 -175.10 -174.65 REMARK 500 7 ASN A 38 41.88 36.49 REMARK 500 7 LYS A 40 137.43 -34.14 REMARK 500 7 ASN A 53 -28.69 -38.22 REMARK 500 7 ILE A 56 -26.24 -38.52 REMARK 500 7 TRP A 59 174.82 -57.45 REMARK 500 7 ASP A 75 49.83 72.22 REMARK 500 7 ASP A 79 35.74 38.30 REMARK 500 7 SER A 91 -31.26 -38.79 REMARK 500 7 LYS A 92 -70.85 -74.87 REMARK 500 7 VAL A 108 45.27 -82.72 REMARK 500 8 TRP A 31 -176.48 -175.45 REMARK 500 8 GLU A 36 40.69 -83.68 REMARK 500 8 LYS A 40 115.65 -34.22 REMARK 500 8 ILE A 56 -26.30 -38.31 REMARK 500 8 TRP A 59 176.34 -57.74 REMARK 500 8 LYS A 92 -75.16 -83.02 REMARK 500 8 PRO A 96 -173.10 -69.74 REMARK 500 8 LEU A 106 173.96 -57.92 REMARK 500 8 PRO A 111 88.54 -69.73 REMARK 500 9 SER A 6 145.96 -33.22 REMARK 500 9 GLU A 36 39.52 -82.36 REMARK 500 9 LYS A 40 108.79 -40.90 REMARK 500 9 TRP A 59 175.80 -53.28 REMARK 500 9 SER A 91 -19.41 -47.44 REMARK 500 9 LYS A 92 -74.90 -88.15 REMARK 500 9 PRO A 96 -177.31 -69.71 REMARK 500 10 SER A 3 94.24 -68.13 REMARK 500 10 SER A 6 -70.39 -133.94 REMARK 500 10 GLU A 36 47.13 -81.39 REMARK 500 10 ASN A 38 39.86 39.27 REMARK 500 10 LYS A 52 -26.28 -37.67 REMARK 500 10 ILE A 56 -25.84 -38.60 REMARK 500 10 TRP A 59 173.00 -55.29 REMARK 500 10 PRO A 96 -163.15 -69.75 REMARK 500 10 VAL A 108 47.88 -80.43 REMARK 500 11 SER A 2 42.39 -84.88 REMARK 500 11 ARG A 20 109.48 -52.43 REMARK 500 11 GLU A 36 40.20 -82.65 REMARK 500 11 ILE A 41 150.42 -47.27 REMARK 500 11 ILE A 56 -26.65 -38.08 REMARK 500 11 TRP A 59 -174.55 -54.36 REMARK 500 11 ASP A 75 54.37 71.55 REMARK 500 11 ASP A 79 34.10 73.19 REMARK 500 11 SER A 91 -32.20 -37.85 REMARK 500 11 LYS A 92 -71.26 -75.01 REMARK 500 11 PRO A 100 85.76 -69.74 REMARK 500 11 SER A 112 93.64 -68.03 REMARK 500 12 GLU A 36 45.73 -79.60 REMARK 500 12 ASN A 38 29.86 46.41 REMARK 500 12 ILE A 56 -26.88 -39.58 REMARK 500 12 TRP A 59 -177.92 -57.08 REMARK 500 12 SER A 91 -17.67 -49.59 REMARK 500 12 LYS A 92 -70.67 -88.97 REMARK 500 12 PRO A 96 -163.23 -69.79 REMARK 500 12 SER A 112 122.05 -38.38 REMARK 500 13 TRP A 31 -176.81 -175.06 REMARK 500 13 LYS A 52 -25.73 -38.52 REMARK 500 13 TRP A 59 170.54 -53.61 REMARK 500 13 ASP A 75 51.93 70.86 REMARK 500 13 SER A 91 -25.92 -39.34 REMARK 500 13 PRO A 96 -179.36 -69.69 REMARK 500 13 PRO A 100 96.68 -69.70 REMARK 500 13 PRO A 111 86.53 -69.74 REMARK 500 14 SER A 5 106.29 -42.04 REMARK 500 14 SER A 6 -61.78 -107.59 REMARK 500 14 TRP A 31 -176.11 -175.18 REMARK 500 14 ILE A 56 -28.11 -37.08 REMARK 500 14 TRP A 59 170.27 -57.37 REMARK 500 14 ASP A 75 53.66 70.00 REMARK 500 14 SER A 91 -30.70 -38.26 REMARK 500 14 LYS A 92 -71.63 -76.14 REMARK 500 14 PRO A 96 -178.53 -69.75 REMARK 500 14 VAL A 108 47.48 -81.32 REMARK 500 14 SER A 112 106.29 -48.38 REMARK 500 15 GLU A 36 45.75 -90.37 REMARK 500 15 ILE A 56 -28.39 -37.21 REMARK 500 15 TRP A 59 177.34 -55.94 REMARK 500 15 ASN A 77 162.71 -48.13 REMARK 500 15 PRO A 96 -169.69 -69.73 REMARK 500 15 SER A 109 -60.17 -95.90 REMARK 500 15 SER A 113 106.36 -37.56 REMARK 500 16 SER A 3 44.74 -88.42 REMARK 500 16 TRP A 31 -176.82 -175.31 REMARK 500 16 GLU A 36 43.66 -94.27 REMARK 500 16 ILE A 56 -27.55 -37.65 REMARK 500 16 TRP A 59 -176.70 -57.56 REMARK 500 16 ASN A 77 150.02 -45.65 REMARK 500 16 PRO A 96 -171.55 -69.79 REMARK 500 16 VAL A 108 49.86 -78.49 REMARK 500 17 ARG A 20 124.11 -34.24 REMARK 500 17 GLU A 36 40.40 -91.18 REMARK 500 17 LYS A 40 115.72 -35.23 REMARK 500 17 ILE A 56 -25.78 -39.03 REMARK 500 17 SER A 65 172.39 -49.56 REMARK 500 17 ASP A 79 29.55 45.90 REMARK 500 17 SER A 91 -33.59 -37.76 REMARK 500 17 SER A 109 73.72 -106.76 REMARK 500 17 SER A 112 44.34 38.19 REMARK 500 18 TRP A 31 -175.57 -173.37 REMARK 500 18 ASN A 38 41.90 34.06 REMARK 500 18 LYS A 40 110.62 -34.01 REMARK 500 18 ILE A 56 -26.31 -38.30 REMARK 500 18 TRP A 59 176.39 -58.18 REMARK 500 18 SER A 91 -29.80 -37.71 REMARK 500 18 PRO A 96 -163.12 -69.72 REMARK 500 19 TRP A 31 -175.50 -175.19 REMARK 500 19 ALA A 37 -25.99 -39.72 REMARK 500 19 LYS A 40 124.72 -33.92 REMARK 500 19 TRP A 59 -177.47 -53.38 REMARK 500 19 ASP A 75 46.25 71.34 REMARK 500 19 ASN A 77 177.69 -55.93 REMARK 500 19 PRO A 96 -170.17 -69.70 REMARK 500 19 VAL A 108 30.34 -96.78 REMARK 500 19 SER A 113 42.14 38.97 REMARK 500 20 GLU A 36 42.97 -86.76 REMARK 500 20 LYS A 52 -26.06 -37.94 REMARK 500 20 TRP A 59 175.52 -50.83 REMARK 500 20 SER A 91 -31.28 -38.37 REMARK 500 20 PRO A 96 -179.42 -69.75 REMARK 500 20 LEU A 106 170.03 -54.16 REMARK 500 20 SER A 112 -175.02 -63.69 REMARK 500 20 SER A 113 41.37 36.22 REMARK 500 REMARK 500 REMARK: NULL
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSO002001052.6 RELATED DB: TARGETDB
DBREF 2EDE A 8 108 UNP P43146 DCC_HUMAN 944 1044
SEQADV 2EDE GLY A 1 UNP P43146 EXPRESSION TAG SEQADV 2EDE SER A 2 UNP P43146 EXPRESSION TAG SEQADV 2EDE SER A 3 UNP P43146 EXPRESSION TAG SEQADV 2EDE GLY A 4 UNP P43146 EXPRESSION TAG SEQADV 2EDE SER A 5 UNP P43146 EXPRESSION TAG SEQADV 2EDE SER A 6 UNP P43146 EXPRESSION TAG SEQADV 2EDE GLY A 7 UNP P43146 EXPRESSION TAG SEQADV 2EDE LEU A 15 UNP P43146 PHE 951 ENGINEERED SEQADV 2EDE SER A 109 UNP P43146 EXPRESSION TAG SEQADV 2EDE GLY A 110 UNP P43146 EXPRESSION TAG SEQADV 2EDE PRO A 111 UNP P43146 EXPRESSION TAG SEQADV 2EDE SER A 112 UNP P43146 EXPRESSION TAG SEQADV 2EDE SER A 113 UNP P43146 EXPRESSION TAG SEQADV 2EDE GLY A 114 UNP P43146 EXPRESSION TAG
SEQRES 1 A 114 GLY SER SER GLY SER SER GLY PRO THR SER ALA PRO LYS SEQRES 2 A 114 ASP LEU THR VAL ILE THR ARG GLU GLY LYS PRO ARG ALA SEQRES 3 A 114 VAL ILE VAL SER TRP GLN PRO PRO LEU GLU ALA ASN GLY SEQRES 4 A 114 LYS ILE THR ALA TYR ILE LEU PHE TYR THR LEU ASP LYS SEQRES 5 A 114 ASN ILE PRO ILE ASP ASP TRP ILE MET GLU THR ILE SER SEQRES 6 A 114 GLY ASP ARG LEU THR HIS GLN ILE MET ASP LEU ASN LEU SEQRES 7 A 114 ASP THR MET TYR TYR PHE ARG ILE GLN ALA ARG ASN SER SEQRES 8 A 114 LYS GLY VAL GLY PRO LEU SER ASP PRO ILE LEU PHE ARG SEQRES 9 A 114 THR LEU LYS VAL SER GLY PRO SER SER GLY
SHEET 1 A 3 LYS A 13 THR A 19 0 SHEET 2 A 3 VAL A 27 GLN A 32 -1 O ILE A 28 N ILE A 18 SHEET 3 A 3 THR A 70 ILE A 73 -1 O HIS A 71 N VAL A 29 SHEET 1 B 4 ILE A 60 SER A 65 0 SHEET 2 B 4 ALA A 43 THR A 49 -1 N LEU A 46 O GLU A 62 SHEET 3 B 4 MET A 81 ARG A 89 -1 O ARG A 85 N PHE A 47 SHEET 4 B 4 ILE A 101 ARG A 104 -1 O ILE A 101 N PHE A 84
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000