2ED8 - Header Asymmetric Unit

HEADER APOPTOSIS 14-FEB-07 2ED8

TITLE SOLUTION STRUCTURE OF THE SECOND FIBRONECTIN TYPE III TITLE 2 DOMAIN OF HUMAN NETRIN RECEPTOR DCC

COMPND MOL_ID: 1; COMPND 2 MOLECULE: NETRIN RECEPTOR DCC; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: SECOND FN3 DOMAIN, FIBRONECTIN TYPE-III 2; COMPND 5 SYNONYM: TUMOR SUPPRESSOR PROTEIN DCC, COLORECTAL CANCER COMPND 6 SUPPRESSOR; COMPND 7 ENGINEERED: YES

SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: DCC; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P050905-21; SOURCE 8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS

KEYWDS TUMOR SUPPRESSOR PROTEIN DCC, COLORECTAL CANCER SUPPRESSOR, KEYWDS 2 STRUCTURAL GENOMICS, NPPSFA, NATIONAL PROJECT ON PROTEIN KEYWDS 3 STRUCTURAL AND FUNCTIONAL ANALYSES, RIKEN STRUCTURAL KEYWDS 4 GENOMICS/PROTEOMICS INITIATIVE, RSGI, APOPTOSIS

EXPDTA SOLUTION NMR

NUMMDL 20

AUTHOR N.TOCHIO,S.KOSHIBA,T.TOMIZAWA,T.KIGAWA,S.YOKOYAMA,RIKEN AUTHOR 2 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI)

REVDAT 2 24-FEB-09 2ED8 1 VERSN REVDAT 1 26-FEB-08 2ED8 0

JRNL AUTH N.TOCHIO,S.KOSHIBA,T.TOMIZAWA,T.KIGAWA,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE SECOND FIBRONECTIN TYPE JRNL TITL 2 III DOMAIN OF HUMAN NETRIN RECEPTOR DCC JRNL REF TO BE PUBLISHED JRNL REFN

REMARK 1

REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.

REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 2.0.17 REMARK 3 AUTHORS : GUNTERT, P. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL

REMARK 4 REMARK 4 2ED8 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08

REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 26-FEB-07. REMARK 100 THE RCSB ID CODE IS RCSB026521.

REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 296 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.2MM SAMPLE U-15N,13C; 20MM REMARK 210 D-TRIS-HCL; 100MM NACL; 1MM D- REMARK 210 DTT; 0.02% NAN3; 10% D2O, 90% REMARK 210 H2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY, 3D_ REMARK 210 15N-SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR 3.5, NMRPIPE REMARK 210 20031121, NMNMRVIEW 5.0.4, REMARK 210 KUJIRA 0.955, CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS, TARGET REMARK 210 FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL

REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.

REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 VAL A 11 170.11 -44.59 REMARK 500 1 ASN A 13 45.72 34.79 REMARK 500 1 ILE A 24 104.97 -162.09 REMARK 500 1 PRO A 37 -171.87 -69.72 REMARK 500 1 SER A 62 120.07 -174.64 REMARK 500 1 LYS A 70 -72.62 -27.14 REMARK 500 1 GLU A 73 102.15 -57.41 REMARK 500 1 ASP A 92 110.91 -39.05 REMARK 500 1 LEU A 98 -174.00 -57.44 REMARK 500 1 PRO A 103 82.62 -69.71 REMARK 500 2 VAL A 11 168.18 -49.69 REMARK 500 2 ASN A 13 47.50 37.77 REMARK 500 2 ILE A 24 104.96 -162.12 REMARK 500 2 TYR A 33 44.98 -85.43 REMARK 500 2 PRO A 37 -179.23 -69.78 REMARK 500 2 SER A 62 123.35 -175.38 REMARK 500 2 LYS A 70 -72.11 -29.75 REMARK 500 2 GLU A 73 104.24 -59.44 REMARK 500 2 LEU A 98 -174.37 -61.87 REMARK 500 2 PRO A 103 3.18 -69.77 REMARK 500 3 SER A 2 47.29 -83.51 REMARK 500 3 SER A 5 106.68 -162.81 REMARK 500 3 VAL A 11 164.61 -41.92 REMARK 500 3 ILE A 24 105.02 -161.66 REMARK 500 3 TYR A 33 57.71 -92.83 REMARK 500 3 PRO A 37 -177.39 -69.72 REMARK 500 3 LYS A 70 -72.07 -30.69 REMARK 500 3 LEU A 98 -174.11 -58.85 REMARK 500 4 VAL A 11 176.41 -48.42 REMARK 500 4 ASN A 13 46.60 37.06 REMARK 500 4 ILE A 24 104.96 -162.45 REMARK 500 4 TYR A 33 46.17 -83.10 REMARK 500 4 PRO A 37 -178.83 -69.76 REMARK 500 4 GLU A 47 98.12 -65.91 REMARK 500 4 SER A 62 132.88 -175.13 REMARK 500 4 LYS A 70 -71.97 -33.55 REMARK 500 4 GLU A 73 104.51 -53.75 REMARK 500 4 ASP A 92 124.35 -33.85 REMARK 500 4 LEU A 98 -175.08 -59.08 REMARK 500 4 ASP A 100 80.76 -63.68 REMARK 500 4 SER A 101 41.66 33.83 REMARK 500 5 ILE A 24 104.92 -162.11 REMARK 500 5 TYR A 33 59.26 -100.33 REMARK 500 5 PRO A 37 -174.98 -69.79 REMARK 500 5 LYS A 70 -71.28 -32.30 REMARK 500 5 GLU A 73 106.95 -57.60 REMARK 500 5 ASP A 92 112.24 -35.92 REMARK 500 5 LEU A 98 -174.44 -56.66 REMARK 500 5 ASP A 100 99.88 -53.87 REMARK 500 6 SER A 5 150.70 -35.12 REMARK 500 6 VAL A 11 -178.40 -62.83 REMARK 500 6 ASN A 13 47.87 38.79 REMARK 500 6 ILE A 24 104.97 -162.52 REMARK 500 6 TYR A 33 43.27 -88.64 REMARK 500 6 ASN A 35 94.44 -65.86 REMARK 500 6 PRO A 37 -176.51 -69.81 REMARK 500 6 LYS A 70 -70.77 -32.35 REMARK 500 6 ARG A 83 -37.22 -36.51 REMARK 500 6 THR A 90 167.17 -47.63 REMARK 500 6 ASP A 92 118.39 -32.37 REMARK 500 6 THR A 97 154.30 -45.31 REMARK 500 6 LEU A 98 -175.12 -59.46 REMARK 500 6 SER A 101 143.24 -34.57 REMARK 500 7 PRO A 8 -178.95 -69.75 REMARK 500 7 VAL A 11 172.44 -47.75 REMARK 500 7 ILE A 24 105.04 -162.46 REMARK 500 7 TYR A 33 56.70 -99.71 REMARK 500 7 PRO A 37 -176.97 -69.76 REMARK 500 7 SER A 62 120.81 -174.77 REMARK 500 7 LYS A 70 -71.41 -28.78 REMARK 500 7 GLU A 73 102.94 -55.16 REMARK 500 7 LEU A 98 -174.48 -59.51 REMARK 500 8 SER A 2 42.03 71.97 REMARK 500 8 VAL A 11 164.87 -47.14 REMARK 500 8 ILE A 24 104.96 -162.77 REMARK 500 8 TYR A 33 44.36 -100.41 REMARK 500 8 PRO A 37 -174.47 -69.78 REMARK 500 8 LYS A 70 -71.64 -32.49 REMARK 500 8 ARG A 83 -36.93 -34.13 REMARK 500 8 ASP A 92 117.14 -34.37 REMARK 500 8 LEU A 98 -174.17 -64.27 REMARK 500 8 ASP A 100 97.54 -60.09 REMARK 500 8 PRO A 103 2.14 -69.76 REMARK 500 9 VAL A 11 167.62 -43.28 REMARK 500 9 ASN A 13 45.49 39.32 REMARK 500 9 ILE A 24 105.02 -162.42 REMARK 500 9 TYR A 33 46.05 -96.97 REMARK 500 9 GLN A 39 -38.11 -38.88 REMARK 500 9 SER A 62 132.13 -175.27 REMARK 500 9 LYS A 70 -71.07 -32.28 REMARK 500 9 GLU A 73 103.44 -58.96 REMARK 500 9 ASP A 92 105.68 -55.51 REMARK 500 9 LEU A 98 -174.94 -62.09 REMARK 500 10 PRO A 8 -173.43 -69.76 REMARK 500 10 VAL A 11 166.84 -47.83 REMARK 500 10 ASN A 13 46.08 34.85 REMARK 500 10 ILE A 24 105.34 -162.75 REMARK 500 10 TYR A 33 43.63 -92.03 REMARK 500 10 PRO A 37 -176.03 -69.77 REMARK 500 10 SER A 62 122.50 -174.83 REMARK 500 10 LYS A 70 -71.60 -32.63 REMARK 500 10 GLU A 73 108.04 -55.00 REMARK 500 10 LEU A 98 -175.11 -57.46 REMARK 500 11 VAL A 11 165.38 -44.73 REMARK 500 11 ILE A 24 105.06 -162.68 REMARK 500 11 TYR A 33 42.28 -97.63 REMARK 500 11 LYS A 70 -72.32 -35.01 REMARK 500 11 ARG A 83 -34.40 -38.17 REMARK 500 11 LEU A 98 -173.60 -57.04 REMARK 500 11 ASP A 100 48.03 -80.33 REMARK 500 11 SER A 101 108.50 -48.28 REMARK 500 12 SER A 2 41.92 39.40 REMARK 500 12 PRO A 8 -174.25 -69.76 REMARK 500 12 ILE A 24 105.09 -162.62 REMARK 500 12 PRO A 37 -172.29 -69.84 REMARK 500 12 SER A 62 135.24 -174.20 REMARK 500 12 LYS A 70 -72.32 -30.72 REMARK 500 12 GLU A 73 109.21 -54.38 REMARK 500 12 ASP A 92 115.58 -33.78 REMARK 500 12 LEU A 98 -174.55 -57.46 REMARK 500 12 SER A 105 44.38 -80.60 REMARK 500 13 PRO A 8 -178.66 -69.73 REMARK 500 13 VAL A 11 163.31 -46.92 REMARK 500 13 ILE A 24 105.06 -161.67 REMARK 500 13 TYR A 33 40.39 -102.89 REMARK 500 13 SER A 62 134.57 -174.04 REMARK 500 13 LYS A 70 -75.21 -34.85 REMARK 500 13 GLU A 73 105.99 -54.93 REMARK 500 13 LEU A 98 -173.67 -54.72 REMARK 500 14 SER A 2 42.18 -101.71 REMARK 500 14 SER A 5 109.66 -41.30 REMARK 500 14 VAL A 11 164.79 -41.80 REMARK 500 14 ILE A 24 105.00 -162.26 REMARK 500 14 TYR A 33 40.11 -84.10 REMARK 500 14 LYS A 70 -71.74 -32.64 REMARK 500 14 ASP A 92 102.70 -44.78 REMARK 500 14 LEU A 98 -175.04 -59.89 REMARK 500 15 SER A 2 119.82 -165.35 REMARK 500 15 SER A 3 95.47 -62.04 REMARK 500 15 ASN A 13 48.27 37.85 REMARK 500 15 ILE A 24 104.97 -162.56 REMARK 500 15 PRO A 37 -176.30 -69.74 REMARK 500 15 SER A 62 126.66 -175.02 REMARK 500 15 LYS A 70 -71.28 -31.56 REMARK 500 15 GLU A 73 107.15 -52.73 REMARK 500 15 ARG A 83 -34.34 -39.62 REMARK 500 15 ASP A 92 111.93 -39.87 REMARK 500 15 LEU A 98 -174.80 -55.52 REMARK 500 15 PRO A 103 10.23 -69.73 REMARK 500 15 SER A 104 133.05 -31.84 REMARK 500 15 SER A 105 177.10 -48.69 REMARK 500 16 VAL A 11 175.62 -48.20 REMARK 500 16 ASN A 13 43.76 34.86 REMARK 500 16 ILE A 24 105.30 -162.14 REMARK 500 16 PRO A 37 -176.98 -69.71 REMARK 500 16 SER A 62 123.60 -175.15 REMARK 500 16 LYS A 70 -71.55 -28.92 REMARK 500 16 GLU A 73 106.38 -55.89 REMARK 500 16 ASP A 92 125.89 -34.18 REMARK 500 16 LEU A 98 -173.80 -60.12 REMARK 500 16 SER A 105 82.93 -64.56 REMARK 500 17 VAL A 11 -179.04 -69.16 REMARK 500 17 ASN A 13 43.56 33.43 REMARK 500 17 ILE A 24 105.02 -162.76 REMARK 500 17 TYR A 33 43.06 -87.14 REMARK 500 17 LYS A 70 -71.70 -31.63 REMARK 500 17 GLU A 73 105.32 -59.38 REMARK 500 17 ARG A 83 -34.20 -36.56 REMARK 500 17 THR A 90 161.20 -44.75 REMARK 500 17 ASP A 92 103.36 -43.88 REMARK 500 17 LEU A 98 -174.01 -59.03 REMARK 500 18 SER A 2 -44.32 -134.69 REMARK 500 18 VAL A 11 165.16 -44.14 REMARK 500 18 ASN A 13 47.32 39.77 REMARK 500 18 ILE A 24 105.04 -162.70 REMARK 500 18 TYR A 33 64.97 -101.01 REMARK 500 18 ASN A 35 88.21 -69.53 REMARK 500 18 PRO A 37 -172.60 -69.70 REMARK 500 18 SER A 62 131.79 -175.05 REMARK 500 18 LYS A 70 -73.27 -27.16 REMARK 500 18 GLU A 73 102.15 -54.79 REMARK 500 18 ARG A 83 -39.79 -34.65 REMARK 500 18 ASP A 92 115.49 -37.75 REMARK 500 18 LEU A 98 -173.53 -59.71 REMARK 500 18 SER A 105 148.36 -170.05 REMARK 500 19 ILE A 24 105.05 -161.87 REMARK 500 19 ASN A 35 79.89 -68.83 REMARK 500 19 PRO A 37 -173.22 -69.77 REMARK 500 19 SER A 62 123.34 -175.12 REMARK 500 19 LYS A 70 -72.25 -28.53 REMARK 500 19 GLU A 73 99.55 -58.08 REMARK 500 19 THR A 97 152.20 -48.87 REMARK 500 19 LEU A 98 -174.34 -61.07 REMARK 500 20 SER A 6 -73.25 -117.65 REMARK 500 20 VAL A 11 173.99 -46.54 REMARK 500 20 ASN A 13 42.75 37.97 REMARK 500 20 ILE A 24 106.23 -161.78 REMARK 500 20 ASN A 35 96.15 -69.98 REMARK 500 20 PRO A 37 -172.24 -69.75 REMARK 500 20 SER A 62 125.35 -175.03 REMARK 500 20 LYS A 70 -73.03 -26.17 REMARK 500 20 ASP A 92 117.88 -34.51 REMARK 500 20 LEU A 98 -174.18 -64.34 REMARK 500 REMARK 500 REMARK: NULL

REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSO002001052.2 RELATED DB: TARGETDB

DBREF 2ED8 A 8 100 UNP P43146 DCC_HUMAN 528 620

SEQADV 2ED8 GLY A 1 UNP P43146 EXPRESSION TAG SEQADV 2ED8 SER A 2 UNP P43146 EXPRESSION TAG SEQADV 2ED8 SER A 3 UNP P43146 EXPRESSION TAG SEQADV 2ED8 GLY A 4 UNP P43146 EXPRESSION TAG SEQADV 2ED8 SER A 5 UNP P43146 EXPRESSION TAG SEQADV 2ED8 SER A 6 UNP P43146 EXPRESSION TAG SEQADV 2ED8 GLY A 7 UNP P43146 EXPRESSION TAG SEQADV 2ED8 SER A 101 UNP P43146 EXPRESSION TAG SEQADV 2ED8 GLY A 102 UNP P43146 EXPRESSION TAG SEQADV 2ED8 PRO A 103 UNP P43146 EXPRESSION TAG SEQADV 2ED8 SER A 104 UNP P43146 EXPRESSION TAG SEQADV 2ED8 SER A 105 UNP P43146 EXPRESSION TAG SEQADV 2ED8 GLY A 106 UNP P43146 EXPRESSION TAG

SEQRES 1 A 106 GLY SER SER GLY SER SER GLY PRO GLY PRO VAL GLU ASN SEQRES 2 A 106 LEU GLN ALA VAL SER THR SER PRO THR SER ILE LEU ILE SEQRES 3 A 106 THR TRP GLU PRO PRO ALA TYR ALA ASN GLY PRO VAL GLN SEQRES 4 A 106 GLY TYR ARG LEU PHE CYS THR GLU VAL SER THR GLY LYS SEQRES 5 A 106 GLU GLN ASN ILE GLU VAL ASP GLY LEU SER TYR LYS LEU SEQRES 6 A 106 GLU GLY LEU LYS LYS PHE THR GLU TYR SER LEU ARG PHE SEQRES 7 A 106 LEU ALA TYR ASN ARG TYR GLY PRO GLY VAL SER THR ASP SEQRES 8 A 106 ASP ILE THR VAL VAL THR LEU SER ASP SER GLY PRO SER SEQRES 9 A 106 SER GLY

SHEET 1 A 3 GLU A 12 VAL A 17 0 SHEET 2 A 3 SER A 23 GLU A 29 -1 O THR A 27 N GLN A 15 SHEET 3 A 3 TYR A 63 GLU A 66 -1 O LEU A 65 N ILE A 24 SHEET 1 B 4 GLU A 53 VAL A 58 0 SHEET 2 B 4 GLY A 40 GLU A 47 -1 N LEU A 43 O ILE A 56 SHEET 3 B 4 GLU A 73 TYR A 81 -1 O SER A 75 N THR A 46 SHEET 4 B 4 PRO A 86 SER A 89 -1 O GLY A 87 N ALA A 80 SHEET 1 C 4 GLU A 53 VAL A 58 0 SHEET 2 C 4 GLY A 40 GLU A 47 -1 N LEU A 43 O ILE A 56 SHEET 3 C 4 GLU A 73 TYR A 81 -1 O SER A 75 N THR A 46 SHEET 4 C 4 ILE A 93 VAL A 96 -1 O ILE A 93 N LEU A 76

CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1

ORIGX1 1.000000 0.000000 0.000000 0.00000

ORIGX2 0.000000 1.000000 0.000000 0.00000

ORIGX3 0.000000 0.000000 1.000000 0.00000

SCALE1 1.000000 0.000000 0.000000 0.00000

SCALE2 0.000000 1.000000 0.000000 0.00000

SCALE3 0.000000 0.000000 1.000000 0.00000