10 20 30 40 50 60 70 80 2ECC - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER DNA BINDING PROTEIN 13-FEB-07 2ECC
TITLE SOLUTION STRUCTURE OF THE SECOND HOMEOBOX DOMAIN OF HUMAN TITLE 2 HOMEODOMAIN LEUCINE ZIPPER-ENCODING GENE (HOMEZ)
COMPND MOL_ID: 1; COMPND 2 MOLECULE: HOMEOBOX AND LEUCINE ZIPPER PROTEIN HOMEZ; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: HOMEOBOX DOMAIN; COMPND 5 SYNONYM: HOMEODOMAIN LEUCINE ZIPPER- CONTAINING FACTOR; COMPND 6 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: HOMEZ, KIAA1443; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P040126-87; SOURCE 8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS
KEYWDS HOMEOBOX DOMAIN, TRANSCRIPTION FACTOR, HOMEZ, LEUCINE KEYWDS 2 ZIPPER- CONTAINING FACTOR, STRUCTURAL GENOMICS, NPPSFA, KEYWDS 3 NATIONAL PROJECT ON PROTEIN STRUCTURAL AND FUNCTIONAL KEYWDS 4 ANALYSES, RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, KEYWDS 5 RSGI, DNA BINDING PROTEIN
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR S.OHNISHI,Y.O.KAMATARI,N.TOCHIO,N.NAMEKI,K.MIYAMOTO,H.LI, AUTHOR 2 N.KOBAYASHI,S.KOSHIBA,M.INOUE,T.KIGAWA,S.YOKOYAMA,RIKEN AUTHOR 3 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI)
REVDAT 2 24-FEB-09 2ECC 1 VERSN REVDAT 1 27-FEB-07 2ECC 0
SPRSDE 27-FEB-07 2ECC 1WJH
JRNL AUTH S.OHNISHI,Y.O.KAMATARI,N.TOCHIO,N.KOBAYASHI, JRNL AUTH 2 S.KOSHIBA,M.INOUE,T.KIGAWA,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE SECOND HOMEOBOX DOMAIN JRNL TITL 2 OF HUMAN HOMEODOMAIN LEUCINE ZIPPER-ENCODING GENE JRNL TITL 3 (HOMEZ) JRNL REF TO BE PUBLISHED JRNL REFN
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 2.0.17 REMARK 3 AUTHORS : GUNTERT, P. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 2ECC COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 14-FEB-07. REMARK 100 THE RCSB ID CODE IS RCSB026492.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.14MM HOMEOBOX DOMAIN U-15N, REMARK 210 13C; 20MM D-TRIS-HCL; 100MM REMARK 210 NACL; 1MM D-DTT; 0.02% NAN3; REMARK 210 90% H2O, 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY, 3D_ REMARK 210 15N-SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR 2.6, NMRPIPE REMARK 210 20030801, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.8998, CYANA 2.0.17 REMARK 210 METHOD USED : TORTION ANGLE DYNAMICS, REMARK 210 RESTRAINED SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS, REMARK 210 STRUCTURES WITH THE LOWEST REMARK 210 ENERGY, TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 3 170.57 -47.11 REMARK 500 1 CYS A 25 105.95 -160.40 REMARK 500 1 ARG A 67 42.05 36.03 REMARK 500 1 ASN A 69 160.37 -46.76 REMARK 500 2 SER A 75 50.45 34.75 REMARK 500 3 LEU A 63 109.27 -47.54 REMARK 500 3 ASN A 69 115.62 -35.31 REMARK 500 4 SER A 6 107.26 -52.66 REMARK 500 4 LEU A 63 107.18 -44.78 REMARK 500 4 ARG A 67 174.88 -52.96 REMARK 500 4 ALA A 70 78.22 -66.52 REMARK 500 5 ASN A 69 42.45 -88.22 REMARK 500 6 LYS A 8 102.99 -57.16 REMARK 500 6 SER A 75 108.56 -41.43 REMARK 500 7 SER A 5 41.54 39.15 REMARK 500 7 LYS A 8 134.76 -36.49 REMARK 500 7 ARG A 9 133.25 -175.01 REMARK 500 7 ASP A 68 106.46 -35.24 REMARK 500 7 ASN A 69 45.76 -102.61 REMARK 500 8 LEU A 63 109.14 -50.51 REMARK 500 8 ALA A 70 41.50 -81.19 REMARK 500 9 SER A 2 41.86 -91.08 REMARK 500 9 LYS A 8 -36.51 -134.01 REMARK 500 9 ARG A 9 47.56 34.07 REMARK 500 9 LYS A 12 -39.38 -34.23 REMARK 500 10 SER A 2 38.52 -90.35 REMARK 500 10 LYS A 10 166.67 -42.87 REMARK 500 10 ARG A 67 40.24 70.18 REMARK 500 11 SER A 2 153.57 -43.82 REMARK 500 11 LEU A 63 105.80 -49.76 REMARK 500 11 ALA A 70 43.20 -108.55 REMARK 500 12 LYS A 8 149.22 -174.90 REMARK 500 12 ARG A 67 46.69 33.42 REMARK 500 12 ASN A 69 42.81 39.62 REMARK 500 12 ALA A 70 41.98 34.19 REMARK 500 13 LYS A 59 -39.18 -39.33 REMARK 500 14 LYS A 10 163.17 -44.11 REMARK 500 14 CYS A 25 119.86 -162.80 REMARK 500 14 ARG A 67 127.11 -34.26 REMARK 500 14 ASN A 69 130.81 -37.67 REMARK 500 14 SER A 71 100.07 -34.52 REMARK 500 14 PRO A 73 1.11 -69.75 REMARK 500 14 SER A 75 152.09 -36.80 REMARK 500 16 SER A 2 -60.97 -125.03 REMARK 500 16 SER A 5 99.94 -46.31 REMARK 500 16 LYS A 59 -36.80 -39.97 REMARK 500 16 LEU A 63 109.05 -51.43 REMARK 500 16 ARG A 67 141.66 -38.52 REMARK 500 17 SER A 5 41.97 39.41 REMARK 500 17 ALA A 70 39.23 70.56 REMARK 500 18 LEU A 63 109.98 -52.38 REMARK 500 18 ARG A 67 102.10 -43.12 REMARK 500 18 ALA A 70 35.69 -83.50 REMARK 500 18 PRO A 73 99.35 -69.69 REMARK 500 19 LYS A 8 86.33 -63.78 REMARK 500 19 LYS A 12 -37.93 -34.26 REMARK 500 19 ASN A 69 103.41 -45.65 REMARK 500 20 CYS A 25 114.38 -160.55 REMARK 500 20 PRO A 73 96.45 -69.79 REMARK 500 20 SER A 75 129.60 -174.08 REMARK 500 REMARK 500 REMARK: NULL
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSK002001415.1 RELATED DB: TARGETDB
DBREF 2ECC A 8 70 UNP Q8IX15 HOMEZ_HUMAN 337 399
SEQADV 2ECC GLY A 1 UNP Q8IX15 CLONING ARTIFACT SEQADV 2ECC SER A 2 UNP Q8IX15 CLONING ARTIFACT SEQADV 2ECC SER A 3 UNP Q8IX15 CLONING ARTIFACT SEQADV 2ECC GLY A 4 UNP Q8IX15 CLONING ARTIFACT SEQADV 2ECC SER A 5 UNP Q8IX15 CLONING ARTIFACT SEQADV 2ECC SER A 6 UNP Q8IX15 CLONING ARTIFACT SEQADV 2ECC GLY A 7 UNP Q8IX15 CLONING ARTIFACT SEQADV 2ECC SER A 71 UNP Q8IX15 CLONING ARTIFACT SEQADV 2ECC GLY A 72 UNP Q8IX15 CLONING ARTIFACT SEQADV 2ECC PRO A 73 UNP Q8IX15 CLONING ARTIFACT SEQADV 2ECC SER A 74 UNP Q8IX15 CLONING ARTIFACT SEQADV 2ECC SER A 75 UNP Q8IX15 CLONING ARTIFACT SEQADV 2ECC GLY A 76 UNP Q8IX15 CLONING ARTIFACT
SEQRES 1 A 76 GLY SER SER GLY SER SER GLY LYS ARG LYS THR LYS GLU SEQRES 2 A 76 GLN LEU ALA ILE LEU LYS SER PHE PHE LEU GLN CYS GLN SEQRES 3 A 76 TRP ALA ARG ARG GLU ASP TYR GLN LYS LEU GLU GLN ILE SEQRES 4 A 76 THR GLY LEU PRO ARG PRO GLU ILE ILE GLN TRP PHE GLY SEQRES 5 A 76 ASP THR ARG TYR ALA LEU LYS HIS GLY GLN LEU LYS TRP SEQRES 6 A 76 PHE ARG ASP ASN ALA SER GLY PRO SER SER GLY
HELIX 1 1 THR A 11 CYS A 25 1 15 HELIX 2 2 ARG A 29 THR A 40 1 12 HELIX 3 3 PRO A 43 GLY A 61 1 19
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000