10 20 30 40 50 60 70 80 2EBU - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER REPLICATION 09-FEB-07 2EBU
TITLE SOLUTION STRUCTURE OF THE BRCT DOMAIN FROM HUMAN TITLE 2 REPLICATION FACTOR C LARGE SUBUNIT 1
COMPND MOL_ID: 1; COMPND 2 MOLECULE: REPLICATION FACTOR C SUBUNIT 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: BRCT DOMAIN; COMPND 5 SYNONYM: REPLICATION FACTOR C LARGE SUBUNIT, RF-C 140 KDA COMPND 6 SUBUNIT, ACTIVATOR 1 140 KDA SUBUNIT, ACTIVATOR 1 LARGE COMPND 7 SUBUNIT, A1 140 KDA SUBUNIT, DNA-BINDING PROTEIN PO-GA; COMPND 8 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 6 EXPRESSION_SYSTEM_PLASMID: P060403-02; SOURCE 7 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS
KEYWDS A/B/A 3 LAYERS, PARALLEL BETA-SHEET, DNA REPLICATION, CLAMP KEYWDS 2 LOADER, RFC1, STRUCTURAL GENOMICS, NPPSFA, NATIONAL PROJECT KEYWDS 3 ON PROTEIN STRUCTURAL AND FUNCTIONAL ANALYSES, RIKEN KEYWDS 4 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR T.NAGASHIMA,F.HAYASHI,S.YOKOYAMA,RIKEN STRUCTURAL AUTHOR 2 GENOMICS/PROTEOMICS INITIATIVE (RSGI)
REVDAT 2 24-FEB-09 2EBU 1 VERSN REVDAT 1 14-AUG-07 2EBU 0
JRNL AUTH T.NAGASHIMA,F.HAYASHI,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE BRCT DOMAIN FROM HUMAN JRNL TITL 2 REPLICATION FACTOR C LARGE SUBUNIT 1 JRNL REF TO BE PUBLISHED JRNL REFN
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 2.0.17 REMARK 3 AUTHORS : GUNTERT, P. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 2EBU COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 14-FEB-07. REMARK 100 THE RCSB ID CODE IS RCSB026476.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.17MM UNIFORMLY 13C/15N- REMARK 210 LABELED PROTEIN, 20MM TRISHCL, REMARK 210 100MM NACL, 1MM DTT, 0.02% REMARK 210 NAN3, 10% D2O, 90% H2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY, 3D_ REMARK 210 15N-SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : VNMR 6.1C, NMRPIPE 20020425, REMARK 210 NMRVIEW 5.0.4, KUJIRA 0.9822, REMARK 210 CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY, TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 386 110.63 -166.74 REMARK 500 1 ALA A 393 47.00 36.87 REMARK 500 1 ARG A 423 -37.88 -39.84 REMARK 500 1 ASP A 453 38.00 34.54 REMARK 500 1 PRO A 483 -178.42 -69.81 REMARK 500 1 ALA A 492 -178.39 -61.51 REMARK 500 1 VAL A 493 39.70 34.17 REMARK 500 2 SER A 390 42.93 -86.08 REMARK 500 2 GLU A 419 -69.58 -94.73 REMARK 500 2 ASP A 453 39.01 34.75 REMARK 500 2 PRO A 483 -165.18 -69.74 REMARK 500 2 LYS A 488 43.50 -91.45 REMARK 500 3 SER A 420 -31.60 -39.74 REMARK 500 3 ASP A 424 -65.86 -92.56 REMARK 500 3 ASP A 453 39.04 34.56 REMARK 500 3 PRO A 483 -173.26 -69.71 REMARK 500 3 LYS A 486 47.59 33.15 REMARK 500 3 ALA A 492 48.04 34.43 REMARK 500 4 SER A 396 28.20 48.29 REMARK 500 4 ASP A 453 38.80 34.41 REMARK 500 4 GLN A 456 30.80 36.16 REMARK 500 4 GLU A 472 -32.79 -35.31 REMARK 500 4 PRO A 483 -166.39 -69.74 REMARK 500 4 SER A 487 142.38 -173.88 REMARK 500 4 ALA A 492 153.75 -45.54 REMARK 500 5 SER A 389 -49.81 -130.42 REMARK 500 5 ARG A 423 -31.75 -38.14 REMARK 500 5 ASN A 440 124.96 -170.96 REMARK 500 5 ASP A 453 36.34 34.08 REMARK 500 5 PRO A 483 -165.86 -69.76 REMARK 500 5 GLU A 490 139.71 -37.93 REMARK 500 6 ALA A 393 50.97 -114.72 REMARK 500 6 ASP A 453 36.95 34.42 REMARK 500 6 PRO A 483 -170.31 -69.84 REMARK 500 6 THR A 495 158.52 -48.37 REMARK 500 7 GLU A 419 -67.07 -102.74 REMARK 500 7 ASP A 453 44.89 36.39 REMARK 500 7 PRO A 483 -163.82 -69.74 REMARK 500 8 ASP A 453 53.46 35.68 REMARK 500 8 GLU A 472 -25.83 -39.80 REMARK 500 8 PRO A 483 -164.49 -69.80 REMARK 500 8 GLU A 494 167.23 -49.52 REMARK 500 9 SER A 387 118.20 -166.02 REMARK 500 9 SER A 389 43.50 35.41 REMARK 500 9 LYS A 392 44.21 34.62 REMARK 500 9 ASP A 453 48.17 34.37 REMARK 500 9 PRO A 483 -164.89 -69.73 REMARK 500 10 SER A 420 -39.25 -37.67 REMARK 500 10 ARG A 423 -35.23 -38.36 REMARK 500 10 ASP A 453 40.07 34.56 REMARK 500 10 ASP A 460 -70.04 -37.60 REMARK 500 10 PRO A 483 -163.99 -69.73 REMARK 500 11 ASP A 453 38.05 34.45 REMARK 500 11 PRO A 483 -165.91 -69.78 REMARK 500 11 ALA A 492 65.93 -107.66 REMARK 500 12 ASP A 453 46.83 38.29 REMARK 500 12 PRO A 483 -164.17 -69.72 REMARK 500 12 LYS A 486 46.77 33.23 REMARK 500 13 ASP A 453 37.29 34.32 REMARK 500 13 PRO A 483 -165.75 -69.78 REMARK 500 14 SER A 420 -71.87 -48.45 REMARK 500 14 GLU A 422 178.83 -59.49 REMARK 500 14 ASP A 453 37.55 34.43 REMARK 500 14 PRO A 483 -165.05 -69.67 REMARK 500 15 SER A 389 100.76 -41.14 REMARK 500 15 LEU A 394 98.02 -37.57 REMARK 500 15 ARG A 423 -32.63 -35.68 REMARK 500 15 PRO A 483 -168.87 -69.69 REMARK 500 16 SER A 396 34.04 -96.71 REMARK 500 16 ASP A 453 38.12 34.40 REMARK 500 16 PRO A 483 -175.10 -69.73 REMARK 500 17 SER A 386 148.26 -39.87 REMARK 500 17 ARG A 423 -36.43 -39.29 REMARK 500 17 ASP A 453 45.59 38.02 REMARK 500 17 PRO A 483 -164.34 -69.83 REMARK 500 18 ASN A 440 114.08 -168.67 REMARK 500 18 PRO A 483 -166.69 -69.83 REMARK 500 18 ILE A 491 70.17 -112.84 REMARK 500 19 GLU A 422 -175.55 -65.57 REMARK 500 19 ASP A 453 46.99 37.72 REMARK 500 19 PRO A 483 -165.48 -69.77 REMARK 500 20 GLU A 425 -71.03 -36.75 REMARK 500 20 ASP A 453 38.54 34.53 REMARK 500 20 GLU A 472 -30.96 -38.96 REMARK 500 20 PRO A 483 -164.49 -69.75 REMARK 500 20 ILE A 491 74.22 -116.48 REMARK 500 20 ALA A 492 52.39 38.71 REMARK 500 REMARK 500 REMARK: NULL
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSK003000047.2 RELATED DB: TARGETDB
DBREF 2EBU A 392 496 UNP P35251 RFC1_HUMAN 392 496
SEQADV 2EBU GLY A 385 UNP P35251 CLONING ARTIFACT SEQADV 2EBU SER A 386 UNP P35251 CLONING ARTIFACT SEQADV 2EBU SER A 387 UNP P35251 CLONING ARTIFACT SEQADV 2EBU GLY A 388 UNP P35251 CLONING ARTIFACT SEQADV 2EBU SER A 389 UNP P35251 CLONING ARTIFACT SEQADV 2EBU SER A 390 UNP P35251 CLONING ARTIFACT SEQADV 2EBU GLY A 391 UNP P35251 CLONING ARTIFACT
SEQRES 1 A 112 GLY SER SER GLY SER SER GLY LYS ALA LEU GLY SER LYS SEQRES 2 A 112 GLU ILE PRO LYS GLY ALA GLU ASN CYS LEU GLU GLY LEU SEQRES 3 A 112 ILE PHE VAL ILE THR GLY VAL LEU GLU SER ILE GLU ARG SEQRES 4 A 112 ASP GLU ALA LYS SER LEU ILE GLU ARG TYR GLY GLY LYS SEQRES 5 A 112 VAL THR GLY ASN VAL SER LYS LYS THR ASN TYR LEU VAL SEQRES 6 A 112 MET GLY ARG ASP SER GLY GLN SER LYS SER ASP LYS ALA SEQRES 7 A 112 ALA ALA LEU GLY THR LYS ILE ILE ASP GLU ASP GLY LEU SEQRES 8 A 112 LEU ASN LEU ILE ARG THR MET PRO GLY LYS LYS SER LYS SEQRES 9 A 112 TYR GLU ILE ALA VAL GLU THR GLU
HELIX 1 1 GLU A 422 TYR A 433 1 12 HELIX 2 2 GLN A 456 GLY A 466 1 11 HELIX 3 3 GLU A 472 MET A 482 1 11
SHEET 1 A 4 LYS A 436 VAL A 437 0 SHEET 2 A 4 ILE A 411 ILE A 414 1 N PHE A 412 O LYS A 436 SHEET 3 A 4 TYR A 447 MET A 450 1 O TYR A 447 N ILE A 411 SHEET 4 A 4 LYS A 468 ASP A 471 1 O ILE A 470 N MET A 450
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000