10 20 30 40 50 60 70 80 2EBR - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER TRANSPORT PROTEIN 09-FEB-07 2EBR
TITLE SOLUTION STRUCTURE OF THE FOURTH ZF-RANBP DOMAIN FROM HUMAN TITLE 2 NUCLEAR PORE COMPLEX PROTEIN NUP153
COMPND MOL_ID: 1; COMPND 2 MOLECULE: NUCLEAR PORE COMPLEX PROTEIN NUP153; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: ZF-RANBP DOMAIN; COMPND 5 SYNONYM: NUCLEOPORIN NUP153, 153 KDA NUCLEOPORIN; COMPND 6 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: NUP153; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P060123-01; SOURCE 8 OTHER_DETAILS: CELL FREE PROTEIN SYNTHESIS
KEYWDS ZF-RANBP DOMAIN, NUCLEAR PORE COMPLEX PROTEIN, NUCLEOPORIN KEYWDS 2 NUP153, 153 KDA NUCLEOPORIN, STRUCTURAL GENOMICS, NPPSFA, KEYWDS 3 NATIONAL PROJECT ON PROTEIN STRUCTURAL AND FUNCTIONAL KEYWDS 4 ANALYSES, RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, KEYWDS 5 RSGI, TRANSPORT PROTEIN
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR H.P.ZHANG,T.NAGASHIMA,F.HAYASHI,S.YOKOYAMA,RIKEN STRUCTURAL AUTHOR 2 GENOMICS/PROTEOMICS INITIATIVE (RSGI)
REVDAT 2 24-FEB-09 2EBR 1 VERSN REVDAT 1 14-AUG-07 2EBR 0
JRNL AUTH H.P.ZHANG,T.NAGASHIMA,F.HAYASHI,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE FOURTH ZF-RANBP DOMAIN JRNL TITL 2 FROM HUMAN NUCLEAR PORE COMPLEX PROTEIN NUP153 JRNL REF TO BE PUBLISHED JRNL REFN
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 2.0.17 REMARK 3 AUTHORS : GUNTENT, P. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 2EBR COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 20-FEB-07. REMARK 100 THE RCSB ID CODE IS RCSB026473.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.16 MM 13C, 15N-LABELED REMARK 210 PROTEIN; 20MM D-TRIS- REMARK 210 HCL(PH7.0); 100MM NACL; 1MM D- REMARK 210 DTT; 0.02%NAN3; 50UM ZNCL2+1MM REMARK 210 IDA; 90% H2O, 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY, 3D_ REMARK 210 13C-SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : VNMR 6.1C, NMRPIPE 20031121, REMARK 210 NMRVIEW 5.04, KUJIRA 0.9818, REMARK 210 CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS, REMARK 210 STRUCTURES WITH THE LOWEST REMARK 210 ENERGY, TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: SPECTROMETER_ID 1 FOR 3D_15N_SEPARATED_NOESY; REMARK 210 SPECTROMETER_ID 2 FOR 3D_13C_SEPARATED_NOESY
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 2 PRO A 8 2.85 -69.78 REMARK 500 3 PRO A 8 3.18 -69.78 REMARK 500 3 SER A 25 103.34 -59.32 REMARK 500 4 PRO A 8 3.79 -69.71 REMARK 500 5 PRO A 8 87.37 -69.72 REMARK 500 6 PRO A 8 1.65 -69.75 REMARK 500 6 PRO A 36 91.71 -69.79 REMARK 500 9 SER A 5 -62.04 -95.90 REMARK 500 10 PRO A 8 82.81 -69.79 REMARK 500 10 PRO A 36 86.17 -69.76 REMARK 500 11 PRO A 8 5.69 -69.76 REMARK 500 11 ASP A 46 -62.11 -97.48 REMARK 500 12 PRO A 36 7.20 -69.72 REMARK 500 14 PRO A 36 3.67 -69.77 REMARK 500 15 THR A 38 -35.63 -35.42 REMARK 500 16 SER A 25 106.69 -52.13 REMARK 500 16 PRO A 36 2.34 -69.74 REMARK 500 17 PRO A 36 10.17 -69.80 REMARK 500 19 PRO A 8 99.11 -69.81 REMARK 500 19 GLU A 32 31.95 39.02 REMARK 500 REMARK 500 REMARK: NULL
REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 1 ZN A 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 14 SG REMARK 620 2 CYS A 17 SG 110.2 REMARK 620 3 CYS A 28 SG 108.2 105.1 REMARK 620 4 CYS A 31 SG 114.0 113.6 105.1 REMARK 620 N 1 2 3
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 201
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2EBQ RELATED DB: PDB REMARK 900 THE SECOND ZF-RANBP DOMAIN OF THE SAME PROTEIN REMARK 900 RELATED ID: HSO002001298.3 RELATED DB: TARGETDB
DBREF 2EBR A 8 47 UNP P49790 NU153_HUMAN 851 890
SEQADV 2EBR GLY A 1 UNP P49790 CLONING ARTIFACT SEQADV 2EBR SER A 2 UNP P49790 CLONING ARTIFACT SEQADV 2EBR SER A 3 UNP P49790 CLONING ARTIFACT SEQADV 2EBR GLY A 4 UNP P49790 CLONING ARTIFACT SEQADV 2EBR SER A 5 UNP P49790 CLONING ARTIFACT SEQADV 2EBR SER A 6 UNP P49790 CLONING ARTIFACT SEQADV 2EBR GLY A 7 UNP P49790 CLONING ARTIFACT
SEQRES 1 A 47 GLY SER SER GLY SER SER GLY PRO GLU GLY SER TRP ASP SEQRES 2 A 47 CYS GLU LEU CYS LEU VAL GLN ASN LYS ALA ASP SER THR SEQRES 3 A 47 LYS CYS LEU ALA CYS GLU SER ALA LYS PRO GLY THR LYS SEQRES 4 A 47 SER GLY PHE LYS GLY PHE ASP THR
HET ZN A 201 1
HETNAM ZN ZINC ION
FORMUL 2 ZN ZN 2+
LINK ZN ZN A 201 SG CYS A 14 1555 1555 2.34 LINK ZN ZN A 201 SG CYS A 17 1555 1555 2.25 LINK ZN ZN A 201 SG CYS A 28 1555 1555 2.35 LINK ZN ZN A 201 SG CYS A 31 1555 1555 2.25
SITE 1 AC1 4 CYS A 14 CYS A 17 CYS A 28 CYS A 31
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000