10 20 30 40 50 60 70 80 2EBM - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 09-FEB-07 2EBM
TITLE SOLUTION STRUCTURE OF THE RWD DOMAIN OF HUMAN RWD DOMAIN TITLE 2 CONTAINING PROTEIN 1
COMPND MOL_ID: 1; COMPND 2 MOLECULE: RWD DOMAIN-CONTAINING PROTEIN 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RWD DOMAIN; COMPND 5 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: RWDD1; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P060522-12; SOURCE 8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS
KEYWDS RWD DOMAIN, ALPHA+BETA SANDWICH FOLD, NPPSFA, NATIONAL KEYWDS 2 PROJECT ON PROTEIN STRUCTURAL AND FUNCTIONAL ANALYSES, KEYWDS 3 RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI, KEYWDS 4 STRUCTURAL GENOMICS, UNKNOWN FUNCTION
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR M.YONEYAMA,T.TOMIZAWA,S.KOSHIBA,S.WATABE,T.HARADA,T.KIGAWA, AUTHOR 2 S.YOKOYAMA,RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE AUTHOR 3 (RSGI)
REVDAT 2 24-FEB-09 2EBM 1 VERSN REVDAT 1 14-AUG-07 2EBM 0
JRNL AUTH M.YONEYAMA,T.TOMIZAWA,S.KOSHIBA,S.WATABE,T.HARADA, JRNL AUTH 2 T.KIGAWA,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE RWD DOMAIN OF HUMAN RWD JRNL TITL 2 DOMAIN CONTAINING PROTEIN 1 JRNL REF TO BE PUBLISHED JRNL REFN
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 2.0.17 REMARK 3 AUTHORS : GUNTERT, P. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 2EBM COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 19-FEB-07. REMARK 100 THE RCSB ID CODE IS RCSB026470.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 296 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.19MM RWD DOMAIN U-15N,13C; REMARK 210 20MM D-TRIS-HCL(PH 7.0); 100MM REMARK 210 NACL; 1MM D-DTT; 0.02% NAN3; REMARK 210 10% D2O, 90% H2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY, 3D_ REMARK 210 13C-SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR 3.5, NMRPIPE REMARK 210 20030801, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.9820, CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS, TARGET REMARK 210 FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 3 98.84 -69.00 REMARK 500 1 SER A 5 42.24 37.54 REMARK 500 1 TYR A 26 79.68 -114.09 REMARK 500 1 PHE A 30 115.49 -165.11 REMARK 500 1 PRO A 38 97.86 -69.79 REMARK 500 1 PRO A 72 -177.79 -69.78 REMARK 500 1 LEU A 102 131.74 -36.20 REMARK 500 2 ASP A 10 92.90 -57.77 REMARK 500 2 ASP A 28 -58.80 -122.79 REMARK 500 2 SER A 29 -28.61 -39.37 REMARK 500 2 PRO A 38 82.82 -69.75 REMARK 500 2 ASN A 51 38.76 -92.56 REMARK 500 2 TYR A 67 146.97 -34.95 REMARK 500 2 PRO A 72 -164.47 -69.75 REMARK 500 2 GLN A 115 -38.94 -34.14 REMARK 500 3 ARG A 16 -62.72 -92.03 REMARK 500 3 GLU A 23 -19.88 -49.05 REMARK 500 3 ASP A 28 -61.58 -107.82 REMARK 500 3 PRO A 38 91.58 -69.76 REMARK 500 3 ASN A 51 54.67 -97.39 REMARK 500 3 PRO A 72 -167.35 -69.75 REMARK 500 3 GLN A 97 -70.93 -57.26 REMARK 500 3 VAL A 105 134.46 -37.97 REMARK 500 3 ILE A 125 -37.94 -35.70 REMARK 500 4 ASP A 10 101.74 -58.16 REMARK 500 4 ASN A 17 -38.17 -38.25 REMARK 500 4 SER A 24 -71.18 -66.97 REMARK 500 4 ASN A 36 105.00 -160.02 REMARK 500 4 PRO A 38 92.18 -69.78 REMARK 500 4 ASN A 51 50.43 -99.45 REMARK 500 4 PRO A 68 0.89 -69.84 REMARK 500 4 ASP A 69 -37.40 -32.72 REMARK 500 4 PRO A 72 -178.17 -69.77 REMARK 500 5 THR A 9 102.19 -39.03 REMARK 500 5 PRO A 38 80.46 -69.75 REMARK 500 5 GLU A 50 -65.74 -95.09 REMARK 500 5 ASN A 51 32.59 -87.79 REMARK 500 5 ASP A 84 -34.35 -34.63 REMARK 500 6 SER A 6 171.55 -52.58 REMARK 500 6 GLU A 14 -39.91 -34.60 REMARK 500 6 PRO A 38 83.57 -69.80 REMARK 500 6 GLU A 47 177.48 -48.29 REMARK 500 6 PRO A 72 -169.21 -69.80 REMARK 500 6 THR A 127 33.36 -95.25 REMARK 500 7 THR A 9 108.17 -56.57 REMARK 500 7 LEU A 19 -39.54 -39.48 REMARK 500 7 SER A 29 -30.43 -38.99 REMARK 500 7 PRO A 38 80.36 -69.75 REMARK 500 7 GLU A 47 -177.83 -59.59 REMARK 500 7 ASN A 51 45.25 -98.32 REMARK 500 7 ASP A 52 27.13 47.06 REMARK 500 7 TYR A 67 140.78 -172.14 REMARK 500 7 PRO A 72 -176.63 -69.79 REMARK 500 7 ILE A 107 -73.01 -75.60 REMARK 500 8 SER A 5 43.90 -84.72 REMARK 500 8 MET A 8 166.24 -43.38 REMARK 500 8 PRO A 38 90.76 -69.74 REMARK 500 8 ASN A 51 38.97 -93.98 REMARK 500 8 TYR A 67 148.93 -36.12 REMARK 500 8 PRO A 72 -179.44 -69.74 REMARK 500 8 LEU A 102 129.08 -39.93 REMARK 500 8 THR A 127 -39.54 -35.94 REMARK 500 9 SER A 2 41.18 -86.59 REMARK 500 9 SER A 6 154.70 -46.85 REMARK 500 9 PRO A 38 83.13 -69.74 REMARK 500 9 ASN A 51 56.74 -95.01 REMARK 500 9 ASP A 52 29.02 46.23 REMARK 500 9 PRO A 72 -171.61 -69.74 REMARK 500 9 LEU A 102 108.53 -52.97 REMARK 500 10 MET A 8 177.77 -54.20 REMARK 500 10 ASP A 28 -62.32 -120.60 REMARK 500 10 PRO A 38 90.48 -69.72 REMARK 500 10 ASN A 51 65.85 -105.34 REMARK 500 10 TYR A 67 142.39 -36.74 REMARK 500 10 PRO A 72 -179.30 -69.74 REMARK 500 10 GLU A 75 144.87 -173.74 REMARK 500 10 ASN A 101 35.75 -98.17 REMARK 500 10 MET A 104 129.88 -172.53 REMARK 500 10 VAL A 105 128.12 -38.32 REMARK 500 10 ILE A 125 -32.95 -38.88 REMARK 500 11 ASP A 10 105.72 -54.75 REMARK 500 11 ASN A 17 -31.97 -38.99 REMARK 500 11 PRO A 38 89.71 -69.73 REMARK 500 11 ASN A 51 58.46 -98.40 REMARK 500 11 ASP A 52 29.78 38.71 REMARK 500 11 PRO A 68 2.69 -69.77 REMARK 500 11 PRO A 72 -172.51 -69.77 REMARK 500 11 ASP A 86 -73.18 -59.36 REMARK 500 11 ASP A 89 -34.08 -38.82 REMARK 500 12 SER A 29 -34.32 -39.61 REMARK 500 12 PRO A 38 96.71 -69.72 REMARK 500 12 ASN A 51 35.09 -98.94 REMARK 500 12 TYR A 67 140.77 -33.04 REMARK 500 12 ASP A 69 -39.55 -33.98 REMARK 500 12 ASN A 101 33.06 -90.59 REMARK 500 12 THR A 109 -71.53 -61.69 REMARK 500 13 THR A 9 98.68 -46.57 REMARK 500 13 GLU A 13 -65.12 -96.09 REMARK 500 13 ASN A 17 -34.29 -39.76 REMARK 500 13 TYR A 26 79.23 -113.10 REMARK 500 13 ASP A 28 -68.98 -105.49 REMARK 500 13 SER A 29 -32.51 -39.15 REMARK 500 13 PRO A 38 83.17 -69.74 REMARK 500 13 ASN A 51 34.22 -88.93 REMARK 500 13 ALA A 71 129.44 -36.44 REMARK 500 13 PRO A 72 -173.89 -69.75 REMARK 500 13 GLU A 75 128.66 -175.00 REMARK 500 13 VAL A 105 100.80 -41.49 REMARK 500 13 MET A 106 44.86 -93.73 REMARK 500 13 ILE A 107 -73.49 -88.18 REMARK 500 14 ASP A 10 78.16 -68.84 REMARK 500 14 TYR A 26 76.80 -117.50 REMARK 500 14 PRO A 38 80.07 -69.77 REMARK 500 14 ASN A 51 41.07 -88.74 REMARK 500 14 ALA A 71 125.07 -36.91 REMARK 500 14 THR A 109 -70.14 -48.98 REMARK 500 15 MET A 8 42.20 -94.95 REMARK 500 15 ASP A 28 -56.69 -125.86 REMARK 500 15 SER A 29 -39.81 -33.96 REMARK 500 15 PRO A 38 90.24 -69.76 REMARK 500 15 PRO A 72 -168.72 -69.74 REMARK 500 15 VAL A 122 -28.35 -38.61 REMARK 500 15 ILE A 125 -38.15 -37.74 REMARK 500 16 ASP A 28 -58.18 -121.31 REMARK 500 16 PRO A 38 81.48 -69.73 REMARK 500 16 PRO A 72 -174.17 -69.74 REMARK 500 16 VAL A 105 90.32 -60.88 REMARK 500 16 VAL A 122 -29.57 -38.53 REMARK 500 17 ASP A 28 -51.55 -126.79 REMARK 500 17 PRO A 38 94.21 -69.74 REMARK 500 17 ASN A 51 32.21 -99.31 REMARK 500 17 PRO A 68 2.49 -69.78 REMARK 500 17 ALA A 71 135.45 -34.65 REMARK 500 17 ASP A 84 -37.89 -38.55 REMARK 500 17 LEU A 96 -71.01 -55.65 REMARK 500 17 MET A 106 43.27 -95.98 REMARK 500 17 ILE A 107 -73.92 -92.63 REMARK 500 17 LEU A 110 -30.53 -35.85 REMARK 500 17 VAL A 122 -19.35 -48.15 REMARK 500 17 THR A 127 31.45 -85.78 REMARK 500 18 ASN A 17 -39.50 -36.04 REMARK 500 18 ASP A 28 -56.25 -121.80 REMARK 500 18 ASP A 52 33.51 72.20 REMARK 500 18 PRO A 68 0.30 -69.76 REMARK 500 18 PRO A 72 -178.95 -69.75 REMARK 500 18 ASN A 101 31.15 -90.52 REMARK 500 18 ILE A 125 -34.12 -34.68 REMARK 500 19 THR A 9 38.29 -88.99 REMARK 500 19 ASP A 10 45.51 34.68 REMARK 500 19 ASP A 28 -32.91 -130.51 REMARK 500 19 PRO A 38 81.58 -69.80 REMARK 500 19 PRO A 68 2.42 -69.74 REMARK 500 19 PRO A 72 -172.03 -69.77 REMARK 500 19 ASP A 84 -36.05 -36.04 REMARK 500 19 THR A 127 58.19 -107.50 REMARK 500 20 ASP A 10 84.24 -60.87 REMARK 500 20 PRO A 38 95.19 -69.73 REMARK 500 20 GLU A 50 -70.55 -63.55 REMARK 500 20 ASN A 51 36.93 -90.57 REMARK 500 20 ASP A 69 -42.53 -28.48 REMARK 500 20 PRO A 72 -166.23 -69.76 REMARK 500 REMARK 500 REMARK: NULL
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSI002010059.1 RELATED DB: TARGETDB
DBREF 2EBM A 8 128 UNP Q9H446 RWDD1_HUMAN 1 121
SEQADV 2EBM GLY A 1 UNP Q9H446 CLONING ARTIFACT SEQADV 2EBM SER A 2 UNP Q9H446 CLONING ARTIFACT SEQADV 2EBM SER A 3 UNP Q9H446 CLONING ARTIFACT SEQADV 2EBM GLY A 4 UNP Q9H446 CLONING ARTIFACT SEQADV 2EBM SER A 5 UNP Q9H446 CLONING ARTIFACT SEQADV 2EBM SER A 6 UNP Q9H446 CLONING ARTIFACT SEQADV 2EBM GLY A 7 UNP Q9H446 CLONING ARTIFACT
SEQRES 1 A 128 GLY SER SER GLY SER SER GLY MET THR ASP TYR GLY GLU SEQRES 2 A 128 GLU GLN ARG ASN GLU LEU GLU ALA LEU GLU SER ILE TYR SEQRES 3 A 128 PRO ASP SER PHE THR VAL LEU SER GLU ASN PRO PRO SER SEQRES 4 A 128 PHE THR ILE THR VAL THR SER GLU ALA GLY GLU ASN ASP SEQRES 5 A 128 GLU THR VAL GLN THR THR LEU LYS PHE THR TYR SER GLU SEQRES 6 A 128 LYS TYR PRO ASP GLU ALA PRO LEU TYR GLU ILE PHE SER SEQRES 7 A 128 GLN GLU ASN LEU GLU ASP ASN ASP VAL SER ASP ILE LEU SEQRES 8 A 128 LYS LEU LEU ALA LEU GLN ALA GLU GLU ASN LEU GLY MET SEQRES 9 A 128 VAL MET ILE PHE THR LEU VAL THR ALA VAL GLN GLU LYS SEQRES 10 A 128 LEU ASN GLU ILE VAL ASP GLN ILE LYS THR ARG
HELIX 1 1 ASP A 10 TYR A 26 1 17 HELIX 2 2 GLU A 83 LEU A 102 1 20 HELIX 3 3 MET A 106 ILE A 125 1 20 HELIX 4 4 LYS A 126 ARG A 128 5 3
SHEET 1 A 4 PHE A 30 VAL A 32 0 SHEET 2 A 4 SER A 39 ILE A 42 -1 O THR A 41 N THR A 31 SHEET 3 A 4 THR A 57 THR A 62 -1 O PHE A 61 N PHE A 40 SHEET 4 A 4 LEU A 73 GLN A 79 -1 O GLU A 75 N LYS A 60
CISPEP 1 ASN A 36 PRO A 37 1 -0.03 CISPEP 2 TYR A 67 PRO A 68 1 -0.05 CISPEP 3 ASN A 36 PRO A 37 2 -0.04 CISPEP 4 TYR A 67 PRO A 68 2 0.00 CISPEP 5 ASN A 36 PRO A 37 3 -0.03 CISPEP 6 TYR A 67 PRO A 68 3 -0.12 CISPEP 7 ASN A 36 PRO A 37 4 -0.08 CISPEP 8 TYR A 67 PRO A 68 4 0.01 CISPEP 9 ASN A 36 PRO A 37 5 -0.11 CISPEP 10 TYR A 67 PRO A 68 5 -0.12 CISPEP 11 ASN A 36 PRO A 37 6 -0.03 CISPEP 12 TYR A 67 PRO A 68 6 -0.01 CISPEP 13 ASN A 36 PRO A 37 7 -0.10 CISPEP 14 TYR A 67 PRO A 68 7 -0.03 CISPEP 15 ASN A 36 PRO A 37 8 -0.03 CISPEP 16 TYR A 67 PRO A 68 8 -0.06 CISPEP 17 ASN A 36 PRO A 37 9 -0.06 CISPEP 18 TYR A 67 PRO A 68 9 -0.03 CISPEP 19 ASN A 36 PRO A 37 10 -0.03 CISPEP 20 TYR A 67 PRO A 68 10 -0.06 CISPEP 21 ASN A 36 PRO A 37 11 -0.05 CISPEP 22 TYR A 67 PRO A 68 11 -0.07 CISPEP 23 ASN A 36 PRO A 37 12 -0.08 CISPEP 24 TYR A 67 PRO A 68 12 -0.03 CISPEP 25 ASN A 36 PRO A 37 13 -0.06 CISPEP 26 TYR A 67 PRO A 68 13 -0.02 CISPEP 27 ASN A 36 PRO A 37 14 -0.07 CISPEP 28 TYR A 67 PRO A 68 14 -0.16 CISPEP 29 ASN A 36 PRO A 37 15 -0.07 CISPEP 30 TYR A 67 PRO A 68 15 -0.01 CISPEP 31 ASN A 36 PRO A 37 16 -0.08 CISPEP 32 TYR A 67 PRO A 68 16 0.01 CISPEP 33 ASN A 36 PRO A 37 17 0.00 CISPEP 34 TYR A 67 PRO A 68 17 -0.03 CISPEP 35 ASN A 36 PRO A 37 18 -0.02 CISPEP 36 TYR A 67 PRO A 68 18 -0.12 CISPEP 37 ASN A 36 PRO A 37 19 -0.05 CISPEP 38 TYR A 67 PRO A 68 19 -0.07 CISPEP 39 ASN A 36 PRO A 37 20 -0.07 CISPEP 40 TYR A 67 PRO A 68 20 -0.11
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000