2EAO - Header Asymmetric Unit

HEADER SIGNALING PROTEIN, TRANSFERASE 31-JAN-07 2EAO

TITLE SOLUTION STRUCTURE OF THE C-TERMINAL SAM-DOMAIN OF MOUSE TITLE 2 EPHRIN TYPE-B RECEPTOR 1 PRECURSOR (EC 2.7.1.112)

COMPND MOL_ID: 1; COMPND 2 MOLECULE: EPHRIN TYPE-B RECEPTOR 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: C-TERMINAL SAM DOMAIN; COMPND 5 SYNONYM: TYROSINE-PROTEIN KINASE RECEPTOR EPH-2, NET, HEK6, COMPND 6 ELK; COMPND 7 EC: 2.7.10.1; COMPND 8 ENGINEERED: YES

SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: EPHB1, EPHT2, NET; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P051003-03; SOURCE 8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS

KEYWDS CELL-FREE PROTEIN SYNTHESIS, PROTEIN REGULATION, STRUCTURAL KEYWDS 2 GENOMICS, NPPSFA, NATIONAL PROJECT ON PROTEIN STRUCTURAL KEYWDS 3 AND FUNCTIONAL ANALYSES, RIKEN STRUCTURAL KEYWDS 4 GENOMICS/PROTEOMICS INITIATIVE, RSGI, SIGNALING PROTEIN, KEYWDS 5 TRANSFERASE

EXPDTA SOLUTION NMR

NUMMDL 20

AUTHOR A.K.GORONCY,M.SATO,S.KOSHIBA,M.INOUE,T.KIGAWA,S.YOKOYAMA, AUTHOR 2 RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI)

REVDAT 2 24-FEB-09 2EAO 1 VERSN REVDAT 1 31-JUL-07 2EAO 0

JRNL AUTH A.K.GORONCY,M.SATO,S.KOSHIBA,M.INOUE,T.KIGAWA, JRNL AUTH 2 S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE C-TERMINAL SAM-DOMAIN OF JRNL TITL 2 MOUSE EPHRIN TYPE-B RECEPTOR 1 PRECURSOR (EC JRNL TITL 3 2.7.1.112) JRNL REF TO BE PUBLISHED JRNL REFN

REMARK 1

REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.

REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 2.2.2 REMARK 3 AUTHORS : P.GUNTERT ET AL. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL

REMARK 4 REMARK 4 2EAO COMPLIES WITH FORMAT V. 3.15, 01-DEC-08

REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 05-FEB-07. REMARK 100 THE RCSB ID CODE IS RCSB026436.

REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 296 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.14MM SAM DOMAIN; 20MM D- REMARK 210 TRIS-HCL; 100MM NACL; 1MM D- REMARK 210 DTT; 0.02 % NAN3; 90% H2O, 10% REMARK 210 D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY, 3D_ REMARK 210 13C-SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 700 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CYANA 2.2.2, XWINNMR 3.5, REMARK 210 NMRPIPE 20060702, NMRVIEW REMARK 210 5.0.4, KUJIRA 0.9821 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL

REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.

REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 2 73.41 -119.16 REMARK 500 1 PRO A 10 95.02 -69.78 REMARK 500 1 THR A 20 42.48 -93.22 REMARK 500 1 THR A 23 -40.80 -174.52 REMARK 500 1 ILE A 65 103.18 -51.57 REMARK 500 1 GLN A 84 -74.31 -71.37 REMARK 500 1 SER A 86 94.69 58.16 REMARK 500 1 PRO A 89 -176.38 -69.74 REMARK 500 1 SER A 94 178.56 61.25 REMARK 500 1 SER A 98 -52.07 -142.28 REMARK 500 2 PRO A 17 -175.91 -69.75 REMARK 500 2 THR A 20 44.43 -92.50 REMARK 500 2 ALA A 21 26.40 -144.76 REMARK 500 2 ILE A 65 103.14 -51.77 REMARK 500 2 GLN A 84 -73.98 -94.83 REMARK 500 2 SER A 86 124.12 -171.41 REMARK 500 2 SER A 88 70.28 55.85 REMARK 500 3 SER A 2 37.25 -153.68 REMARK 500 3 PRO A 10 90.71 -69.75 REMARK 500 3 SER A 15 59.42 -110.76 REMARK 500 3 PRO A 17 -177.63 -69.79 REMARK 500 3 THR A 23 -41.34 -165.72 REMARK 500 3 ILE A 65 103.20 -51.66 REMARK 500 3 GLN A 84 -73.95 -69.10 REMARK 500 3 SER A 86 118.61 -172.42 REMARK 500 3 PRO A 89 95.47 -69.81 REMARK 500 3 ALA A 93 86.21 -168.29 REMARK 500 3 PRO A 96 85.22 -69.80 REMARK 500 3 SER A 97 81.00 -169.97 REMARK 500 4 SER A 2 -42.78 -135.75 REMARK 500 4 PRO A 10 -172.63 -69.79 REMARK 500 4 ASP A 13 -172.64 60.95 REMARK 500 4 PRO A 17 -178.57 -69.83 REMARK 500 4 THR A 20 44.63 -92.33 REMARK 500 4 ALA A 21 25.94 -142.90 REMARK 500 4 ILE A 65 102.26 -52.94 REMARK 500 4 GLN A 84 -71.46 -94.67 REMARK 500 4 SER A 86 99.87 62.96 REMARK 500 4 MET A 92 72.02 57.62 REMARK 500 4 PRO A 96 -171.88 -69.70 REMARK 500 5 SER A 5 -68.54 -149.11 REMARK 500 5 SER A 8 81.01 57.93 REMARK 500 5 ASP A 13 -74.09 -99.15 REMARK 500 5 ARG A 14 74.49 58.32 REMARK 500 5 PRO A 17 -171.87 -69.78 REMARK 500 5 THR A 20 44.50 -92.10 REMARK 500 5 ALA A 21 24.99 -146.73 REMARK 500 5 THR A 23 -38.36 -169.09 REMARK 500 5 ILE A 65 102.78 -52.22 REMARK 500 5 GLN A 84 -74.45 -95.96 REMARK 500 5 GLN A 87 83.44 52.46 REMARK 500 5 SER A 88 70.27 -171.96 REMARK 500 5 THR A 90 -74.80 -80.74 REMARK 500 5 ALA A 91 128.55 -179.14 REMARK 500 5 ALA A 93 102.39 -162.38 REMARK 500 5 PRO A 96 93.58 -69.77 REMARK 500 6 SER A 3 82.53 63.11 REMARK 500 6 SER A 5 -178.50 62.38 REMARK 500 6 GLN A 9 73.12 -118.24 REMARK 500 6 PRO A 17 -171.11 -69.78 REMARK 500 6 ALA A 21 24.49 -159.51 REMARK 500 6 PHE A 46 73.60 -113.87 REMARK 500 6 ILE A 65 102.66 -52.35 REMARK 500 6 GLN A 84 -74.45 -96.12 REMARK 500 6 SER A 88 70.19 -155.78 REMARK 500 6 ALA A 91 76.84 59.40 REMARK 500 6 PRO A 96 91.44 -69.75 REMARK 500 7 SER A 6 145.90 -170.25 REMARK 500 7 SER A 8 37.54 -145.70 REMARK 500 7 GLN A 9 72.55 -117.20 REMARK 500 7 PRO A 10 -177.64 -69.73 REMARK 500 7 LEU A 11 -174.74 56.11 REMARK 500 7 PRO A 17 -171.32 -69.79 REMARK 500 7 THR A 20 44.61 -91.91 REMARK 500 7 ALA A 21 25.08 -146.42 REMARK 500 7 THR A 23 -38.54 -168.33 REMARK 500 7 ILE A 65 103.12 -51.65 REMARK 500 7 GLN A 84 -72.85 -95.31 REMARK 500 7 SER A 86 63.07 62.92 REMARK 500 7 GLN A 87 97.43 -69.11 REMARK 500 7 SER A 88 70.43 -150.61 REMARK 500 7 ALA A 91 94.08 58.31 REMARK 500 7 ALA A 93 53.45 -105.69 REMARK 500 8 GLN A 9 71.41 -116.38 REMARK 500 8 PRO A 17 -173.78 -69.75 REMARK 500 8 THR A 20 38.44 -94.39 REMARK 500 8 THR A 23 -42.22 -157.37 REMARK 500 8 ILE A 65 103.11 -51.77 REMARK 500 8 GLN A 84 -73.83 -72.36 REMARK 500 8 SER A 86 -62.11 -178.95 REMARK 500 8 GLN A 87 88.36 56.50 REMARK 500 8 MET A 92 -179.88 58.13 REMARK 500 9 PRO A 10 -172.33 -69.78 REMARK 500 9 LEU A 11 170.29 -56.78 REMARK 500 9 LEU A 12 39.67 -95.18 REMARK 500 9 ARG A 14 -49.16 -160.04 REMARK 500 9 PRO A 17 -177.84 -69.82 REMARK 500 9 THR A 20 43.33 -93.64 REMARK 500 9 THR A 23 -41.89 -166.69 REMARK 500 9 ILE A 65 103.10 -51.64 REMARK 500 9 GLN A 84 -74.38 -76.71 REMARK 500 9 SER A 86 36.65 -169.40 REMARK 500 9 GLN A 87 -42.02 -167.64 REMARK 500 9 SER A 97 46.79 -155.87 REMARK 500 10 SER A 2 -179.46 -170.58 REMARK 500 10 PRO A 10 79.15 -69.80 REMARK 500 10 LEU A 11 163.13 63.11 REMARK 500 10 PRO A 17 -173.26 -69.73 REMARK 500 10 THR A 20 42.02 -93.45 REMARK 500 10 THR A 23 -41.53 -171.70 REMARK 500 10 ILE A 65 103.09 -51.74 REMARK 500 10 GLN A 84 -74.46 -70.17 REMARK 500 10 SER A 86 131.01 -174.65 REMARK 500 10 GLN A 87 -172.90 -64.24 REMARK 500 10 ALA A 91 91.22 62.87 REMARK 500 10 SER A 94 42.72 -156.81 REMARK 500 11 SER A 8 -43.29 -174.08 REMARK 500 11 GLN A 9 68.84 -118.81 REMARK 500 11 PRO A 10 -178.64 -69.78 REMARK 500 11 PRO A 17 -178.72 -69.75 REMARK 500 11 THR A 20 44.88 -91.88 REMARK 500 11 ALA A 21 26.42 -142.58 REMARK 500 11 PHE A 46 74.32 -113.20 REMARK 500 11 ILE A 65 103.11 -51.61 REMARK 500 11 GLN A 84 -71.40 -93.38 REMARK 500 11 SER A 86 -41.39 -173.73 REMARK 500 11 SER A 88 71.52 56.24 REMARK 500 11 THR A 90 100.48 61.91 REMARK 500 11 ALA A 91 96.86 62.03 REMARK 500 12 LEU A 12 74.13 53.74 REMARK 500 12 PRO A 17 -173.57 -69.80 REMARK 500 12 THR A 23 -41.87 -169.29 REMARK 500 12 ILE A 65 102.48 -52.75 REMARK 500 12 GLN A 84 -74.41 -77.53 REMARK 500 12 SER A 86 124.94 -179.21 REMARK 500 13 ASP A 13 -47.65 -137.00 REMARK 500 13 SER A 15 68.58 -106.93 REMARK 500 13 PRO A 17 -176.46 -69.82 REMARK 500 13 THR A 20 41.58 -94.01 REMARK 500 13 THR A 23 -40.43 -172.49 REMARK 500 13 ILE A 65 102.95 -51.85 REMARK 500 13 LEU A 67 108.40 -55.27 REMARK 500 13 GLN A 84 -74.34 -95.64 REMARK 500 13 SER A 86 -55.38 -169.73 REMARK 500 13 ALA A 93 92.51 61.40 REMARK 500 14 GLN A 9 70.49 -119.73 REMARK 500 14 PRO A 10 85.59 -69.80 REMARK 500 14 ASP A 13 -61.11 -102.86 REMARK 500 14 PRO A 17 -178.36 -69.84 REMARK 500 14 THR A 20 44.57 -91.91 REMARK 500 14 ALA A 21 25.48 -144.10 REMARK 500 14 PHE A 46 79.71 -113.14 REMARK 500 14 ILE A 65 102.98 -51.72 REMARK 500 14 GLN A 84 -71.56 -89.74 REMARK 500 14 SER A 86 113.27 -177.00 REMARK 500 14 SER A 94 97.82 -64.89 REMARK 500 14 PRO A 96 94.70 -69.83 REMARK 500 15 SER A 8 -176.14 61.57 REMARK 500 15 GLN A 9 73.13 -114.83 REMARK 500 15 PRO A 10 97.83 -69.77 REMARK 500 15 ARG A 14 -53.23 -130.10 REMARK 500 15 PRO A 17 -178.28 -69.74 REMARK 500 15 THR A 20 45.05 -91.49 REMARK 500 15 ALA A 21 25.09 -144.89 REMARK 500 15 THR A 23 -38.50 -168.65 REMARK 500 15 ILE A 65 102.49 -52.63 REMARK 500 15 GLN A 84 -73.57 -80.41 REMARK 500 15 SER A 86 123.24 -178.88 REMARK 500 15 SER A 88 70.99 57.15 REMARK 500 15 MET A 92 30.59 -99.66 REMARK 500 15 PRO A 96 94.50 -69.75 REMARK 500 15 SER A 97 95.14 -161.03 REMARK 500 15 SER A 98 178.67 62.89 REMARK 500 16 SER A 2 -48.38 -162.74 REMARK 500 16 SER A 3 93.66 59.54 REMARK 500 16 SER A 5 142.23 -172.44 REMARK 500 16 SER A 8 -176.66 62.54 REMARK 500 16 ASP A 13 -74.33 -167.42 REMARK 500 16 ARG A 14 -47.66 -171.40 REMARK 500 16 SER A 15 85.15 55.11 REMARK 500 16 PRO A 17 -173.11 -69.77 REMARK 500 16 THR A 23 -42.25 -153.42 REMARK 500 16 ILE A 65 101.67 -53.90 REMARK 500 16 GLN A 84 -73.26 -69.70 REMARK 500 16 SER A 86 -43.41 -169.33 REMARK 500 16 SER A 88 68.82 60.36 REMARK 500 16 PRO A 89 -174.19 -69.82 REMARK 500 16 ALA A 91 85.50 60.52 REMARK 500 17 ASP A 13 55.00 -104.07 REMARK 500 17 ARG A 14 91.08 -174.42 REMARK 500 17 PRO A 17 -170.90 -69.82 REMARK 500 17 THR A 20 47.24 -90.22 REMARK 500 17 ALA A 21 25.31 -143.30 REMARK 500 17 THR A 23 -38.73 -167.78 REMARK 500 17 ILE A 65 102.03 -53.49 REMARK 500 17 GLN A 84 -71.39 -92.39 REMARK 500 17 SER A 86 66.04 63.11 REMARK 500 17 ALA A 91 80.47 -170.59 REMARK 500 17 ALA A 93 -50.82 -168.16 REMARK 500 17 SER A 98 -44.84 -159.95 REMARK 500 18 SER A 2 -72.40 -60.58 REMARK 500 18 SER A 3 67.52 62.21 REMARK 500 18 SER A 5 83.32 57.02 REMARK 500 18 SER A 8 -61.83 -167.58 REMARK 500 18 GLN A 9 71.07 -116.73 REMARK 500 18 PRO A 17 -172.43 -69.82 REMARK 500 18 ALA A 21 27.53 -165.19 REMARK 500 18 ILE A 65 103.05 -51.74 REMARK 500 18 GLN A 84 -74.44 -93.15 REMARK 500 18 SER A 86 90.78 54.15 REMARK 500 18 PRO A 96 99.74 -69.79 REMARK 500 18 SER A 97 74.02 54.82 REMARK 500 19 SER A 2 79.14 56.86 REMARK 500 19 PRO A 10 81.51 -69.76 REMARK 500 19 LEU A 12 83.32 59.97 REMARK 500 19 ARG A 14 -175.30 55.66 REMARK 500 19 SER A 15 34.60 -165.17 REMARK 500 19 PRO A 17 -171.72 -69.74 REMARK 500 19 THR A 20 42.63 -93.09 REMARK 500 19 THR A 23 -41.96 -167.06 REMARK 500 19 ILE A 65 103.24 -51.64 REMARK 500 19 GLN A 84 -74.30 -70.37 REMARK 500 19 SER A 86 36.51 -166.35 REMARK 500 19 GLN A 87 178.21 63.10 REMARK 500 19 PRO A 89 80.48 -69.79 REMARK 500 19 SER A 98 -177.57 61.47 REMARK 500 20 LEU A 11 -173.62 56.00 REMARK 500 20 ASP A 13 -68.11 -94.17 REMARK 500 20 THR A 20 40.96 -93.60 REMARK 500 20 THR A 23 -42.40 -162.35 REMARK 500 20 ILE A 65 100.83 -55.12 REMARK 500 20 GLN A 84 -74.39 -75.94 REMARK 500 20 SER A 86 132.02 -175.89 REMARK 500 20 PRO A 96 93.97 -69.80 REMARK 500 REMARK 500 REMARK: NULL

REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSO002001071.2 RELATED DB: TARGETDB

DBREF 2EAO A 8 93 UNP P54762 EPHB1_HUMAN 899 984

SEQADV 2EAO GLY A 1 UNP P54762 CLONING ARTIFACT SEQADV 2EAO SER A 2 UNP P54762 CLONING ARTIFACT SEQADV 2EAO SER A 3 UNP P54762 CLONING ARTIFACT SEQADV 2EAO GLY A 4 UNP P54762 CLONING ARTIFACT SEQADV 2EAO SER A 5 UNP P54762 CLONING ARTIFACT SEQADV 2EAO SER A 6 UNP P54762 CLONING ARTIFACT SEQADV 2EAO GLY A 7 UNP P54762 CLONING ARTIFACT SEQADV 2EAO SER A 94 UNP P54762 CLONING ARTIFACT SEQADV 2EAO GLY A 95 UNP P54762 CLONING ARTIFACT SEQADV 2EAO PRO A 96 UNP P54762 CLONING ARTIFACT SEQADV 2EAO SER A 97 UNP P54762 CLONING ARTIFACT SEQADV 2EAO SER A 98 UNP P54762 CLONING ARTIFACT SEQADV 2EAO GLY A 99 UNP P54762 CLONING ARTIFACT

SEQRES 1 A 99 GLY SER SER GLY SER SER GLY SER GLN PRO LEU LEU ASP SEQRES 2 A 99 ARG SER ILE PRO ASP PHE THR ALA PHE THR THR VAL ASP SEQRES 3 A 99 ASP TRP LEU SER ALA ILE LYS MET VAL GLN TYR ARG ASP SEQRES 4 A 99 SER PHE LEU THR ALA GLY PHE THR SER LEU GLN LEU VAL SEQRES 5 A 99 THR GLN MET THR SER GLU ASP LEU LEU ARG ILE GLY ILE SEQRES 6 A 99 THR LEU ALA GLY HIS GLN LYS LYS ILE LEU ASN SER ILE SEQRES 7 A 99 HIS SER MET ARG VAL GLN ILE SER GLN SER PRO THR ALA SEQRES 8 A 99 MET ALA SER GLY PRO SER SER GLY

HELIX 1 1 THR A 24 ALA A 31 1 8 HELIX 2 2 MET A 34 GLN A 36 5 3 HELIX 3 3 TYR A 37 GLY A 45 1 9 HELIX 4 4 SER A 48 THR A 53 1 6 HELIX 5 5 THR A 56 GLY A 64 1 9 HELIX 6 6 LEU A 67 ILE A 85 1 19

CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1

ORIGX1 1.000000 0.000000 0.000000 0.00000

ORIGX2 0.000000 1.000000 0.000000 0.00000

ORIGX3 0.000000 0.000000 1.000000 0.00000

SCALE1 1.000000 0.000000 0.000000 0.00000

SCALE2 0.000000 1.000000 0.000000 0.00000

SCALE3 0.000000 0.000000 1.000000 0.00000