10 20 30 40 50 60 70 80 2E8J - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER TRANSPORT PROTEIN 21-JAN-07 2E8J
TITLE SOLUTION STRUCTURE OF DYNEIN LIGHT CHAIN 2A
COMPND MOL_ID: 1; COMPND 2 MOLECULE: DYNEIN LIGHT CHAIN 2A, CYTOPLASMIC; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: DYNEIN LIGHT CHAIN ROADBLOCK-TYPE 1, DL2A, DYNEIN- COMPND 5 ASSOCIATED PROTEIN KM23, BITHORAXOID-LIKE PROTEIN, BLP; COMPND 6 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PGEX
KEYWDS HOMODIMER, TRANSPORT PROTEIN
EXPDTA SOLUTION NMR
AUTHOR T.KOUNO,Y.NABESHIMA,M.MIZUGUCHI,K.KAWANO
REVDAT 2 24-FEB-09 2E8J 1 VERSN REVDAT 1 22-JAN-08 2E8J 0
JRNL AUTH T.KOUNO,Y.NABESHIMA,M.MIZUGUCHI,K.KAWANO JRNL TITL SOLUTION STRUCTURE OF DYNEIN LIGHT CHAIN 2A JRNL REF TO BE PUBLISHED JRNL REFN
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.1F REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 2E8J COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 25-JAN-07. REMARK 100 THE RCSB ID CODE IS RCSB026359.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.6MM DL2A U-15, 13C; 20MM REMARK 210 PHOSPHATE BUFFER NA; 20MM REMARK 210 NACL; 0.1MM EDTA; 95% H2O, 5% REMARK 210 D2O; 0.6MM DL2A U-15, 13C; REMARK 210 20MM PHOSPHATE BUFFER NA; 20MM REMARK 210 NACL; 0.1MM EDTA; 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY, 3D_ REMARK 210 13C-SEPARATED_NOESY, 2D NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 2.2, PIPP 4.3.2 REMARK 210 METHOD USED : DISTANCE GEOMETRY, SIMULATED REMARK 210 ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 50 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 1 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 RES C SSSEQI REMARK 465 GLY A -4 REMARK 465 PRO A -3 REMARK 465 LEU A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 GLY B -4 REMARK 465 PRO B -3 REMARK 465 LEU B -2 REMARK 465 GLY B -1 REMARK 465 SER B 0
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 8 -64.22 -101.97 REMARK 500 GLN A 14 165.12 -41.87 REMARK 500 VAL A 17 106.79 -51.57 REMARK 500 ASN A 24 -152.29 -111.66 REMARK 500 ASP A 35 -88.97 -43.01 REMARK 500 ASN A 36 -54.29 -153.11 REMARK 500 LEU A 45 -72.76 -118.76 REMARK 500 ALA A 53 -60.23 -92.13 REMARK 500 ASP A 61 102.52 -179.67 REMARK 500 ASN A 64 59.87 -94.23 REMARK 500 ASP A 65 164.37 -44.22 REMARK 500 THR A 67 -38.58 -157.07 REMARK 500 ARG A 70 112.99 -168.46 REMARK 500 ASN A 76 -150.97 -179.03 REMARK 500 ALA A 81 104.85 -178.69 REMARK 500 ASP A 83 -156.92 -72.16 REMARK 500 THR A 95 76.39 40.24 REMARK 500 LEU B 8 -62.97 -101.23 REMARK 500 GLN B 14 165.24 -40.04 REMARK 500 LYS B 15 -85.25 -89.17 REMARK 500 ASN B 24 -138.06 -113.47 REMARK 500 SER B 32 100.48 -162.08 REMARK 500 THR B 33 38.58 -92.06 REMARK 500 ASP B 35 -168.93 -53.70 REMARK 500 ASP B 61 108.68 -174.32 REMARK 500 ASN B 64 65.00 -107.78 REMARK 500 THR B 67 -42.63 -162.45 REMARK 500 ARG B 70 120.59 179.47 REMARK 500 SER B 73 -140.80 -95.36 REMARK 500 ASN B 76 -156.19 -147.76 REMARK 500 ALA B 81 100.66 -177.77 REMARK 500 ASP B 83 -155.86 -81.95 REMARK 500 ASP B 85 -0.34 -142.06 REMARK 500 PRO B 94 -158.55 -73.46 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 10 0.27 SIDE_CHAIN REMARK 500 ARG A 54 0.28 SIDE_CHAIN REMARK 500 ARG A 58 0.24 SIDE_CHAIN REMARK 500 ARG A 70 0.24 SIDE_CHAIN REMARK 500 ARG A 72 0.17 SIDE_CHAIN REMARK 500 ARG B 10 0.32 SIDE_CHAIN REMARK 500 ARG B 54 0.30 SIDE_CHAIN REMARK 500 ARG B 58 0.27 SIDE_CHAIN REMARK 500 ARG B 72 0.28 SIDE_CHAIN REMARK 500 REMARK 500 REMARK: NULL
DBREF 2E8J A 1 96 UNP Q9NP97 DLC2A_HUMAN 1 96 DBREF 2E8J B 1 96 UNP Q9NP97 DLC2A_HUMAN 1 96
SEQADV 2E8J GLY A -4 Q9NP97 EXPRESSION TAG SEQADV 2E8J PRO A -3 Q9NP97 EXPRESSION TAG SEQADV 2E8J LEU A -2 Q9NP97 EXPRESSION TAG SEQADV 2E8J GLY A -1 Q9NP97 EXPRESSION TAG SEQADV 2E8J SER A 0 Q9NP97 EXPRESSION TAG SEQADV 2E8J GLY B -4 Q9NP97 EXPRESSION TAG SEQADV 2E8J PRO B -3 Q9NP97 EXPRESSION TAG SEQADV 2E8J LEU B -2 Q9NP97 EXPRESSION TAG SEQADV 2E8J GLY B -1 Q9NP97 EXPRESSION TAG SEQADV 2E8J SER B 0 Q9NP97 EXPRESSION TAG
SEQRES 1 A 101 GLY PRO LEU GLY SER MET ALA GLU VAL GLU GLU THR LEU SEQRES 2 A 101 LYS ARG LEU GLN SER GLN LYS GLY VAL GLN GLY ILE ILE SEQRES 3 A 101 VAL VAL ASN THR GLU GLY ILE PRO ILE LYS SER THR MET SEQRES 4 A 101 ASP ASN PRO THR THR THR GLN TYR ALA SER LEU MET HIS SEQRES 5 A 101 SER PHE ILE LEU LYS ALA ARG SER THR VAL ARG ASP ILE SEQRES 6 A 101 ASP PRO GLN ASN ASP LEU THR PHE LEU ARG ILE ARG SER SEQRES 7 A 101 LYS LYS ASN GLU ILE MET VAL ALA PRO ASP LYS ASP TYR SEQRES 8 A 101 PHE LEU ILE VAL ILE GLN ASN PRO THR GLU SEQRES 1 B 101 GLY PRO LEU GLY SER MET ALA GLU VAL GLU GLU THR LEU SEQRES 2 B 101 LYS ARG LEU GLN SER GLN LYS GLY VAL GLN GLY ILE ILE SEQRES 3 B 101 VAL VAL ASN THR GLU GLY ILE PRO ILE LYS SER THR MET SEQRES 4 B 101 ASP ASN PRO THR THR THR GLN TYR ALA SER LEU MET HIS SEQRES 5 B 101 SER PHE ILE LEU LYS ALA ARG SER THR VAL ARG ASP ILE SEQRES 6 B 101 ASP PRO GLN ASN ASP LEU THR PHE LEU ARG ILE ARG SER SEQRES 7 B 101 LYS LYS ASN GLU ILE MET VAL ALA PRO ASP LYS ASP TYR SEQRES 8 B 101 PHE LEU ILE VAL ILE GLN ASN PRO THR GLU
HELIX 1 1 MET A 1 GLN A 14 1 14 HELIX 2 2 PRO A 37 LEU A 45 1 9 HELIX 3 3 LEU A 45 ASP A 61 1 17 HELIX 4 4 MET B 1 GLN B 14 1 14 HELIX 5 5 PRO B 37 LEU B 45 1 9 HELIX 6 6 LEU B 45 ASP B 61 1 17
SHEET 1 A 8 PRO A 29 THR A 33 0 SHEET 2 A 8 VAL A 17 VAL A 23 -1 N ILE A 20 O THR A 33 SHEET 3 A 8 PHE A 87 GLN A 92 -1 O ILE A 91 N GLN A 18 SHEET 4 A 8 GLU A 77 PRO A 82 -1 N GLU A 77 O GLN A 92 SHEET 5 A 8 PHE A 68 SER A 73 -1 N ILE A 71 O ILE A 78 SHEET 6 A 8 LEU B 66 ARG B 72 -1 O ARG B 72 N PHE A 68 SHEET 7 A 8 GLU B 77 PRO B 82 -1 O VAL B 80 N LEU B 69 SHEET 8 A 8 PHE B 87 ILE B 89 -1 O LEU B 88 N ALA B 81 SHEET 1 B 2 ILE B 20 VAL B 22 0 SHEET 2 B 2 LYS B 31 THR B 33 -1 O THR B 33 N ILE B 20
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000