10 20 30 40 50 60 70 80 2E7H - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER TRANSFERASE, SIGNALING PROTEIN 10-JAN-07 2E7H
TITLE SOLUTION STRUCTURE OF THE SECOND FN3 DOMAIN FROM HUMAN TITLE 2 EPHRIN TYPE-B RECEPTOR 4
COMPND MOL_ID: 1; COMPND 2 MOLECULE: EPHRIN TYPE-B RECEPTOR 4; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: FN3 DOMAIN; COMPND 5 SYNONYM: TYROSINE-PROTEIN KINASE RECEPTOR HTK; COMPND 6 EC: 2.7.10.1; COMPND 7 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: EPHB4, HTK; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P050919-21; SOURCE 8 OTHER_DETAILS: CELL FREE PROTEIN SYNTHESIS
KEYWDS FN3 DOMAIN, EPHRIN TYPE-B RECEPTOR 4 PRECURSOR, TYROSINE- KEYWDS 2 PROTEIN KINASE RECEPTOR HTK, STRUCTURAL GENOMICS, NPPSFA, KEYWDS 3 NATIONAL PROJECT ON PROTEIN STRUCTURAL AND FUNCTIONAL KEYWDS 4 ANALYSES, RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, KEYWDS 5 RSGI, TRANSFERASE, SIGNALING PROTEIN
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR X.R.QIN,F.HAYASHI,S.YOKOYAMA,RIKEN STRUCTURAL AUTHOR 2 GENOMICS/PROTEOMICS INITIATIVE (RSGI)
REVDAT 2 24-FEB-09 2E7H 1 VERSN REVDAT 1 10-JUL-07 2E7H 0
JRNL AUTH X.R.QIN,F.HAYASHI,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE SECOND FN3 DOMAIN FROM JRNL TITL 2 HUMAN EPHRIN TYPE-B RECEPTOR 4 JRNL REF TO BE PUBLISHED JRNL REFN
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 2.0.17 REMARK 3 AUTHORS : GUNTERT, P. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 2E7H COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 17-JAN-07. REMARK 100 THE RCSB ID CODE IS RCSB026321.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.80MM 13C, 15N-LABELED REMARK 210 PROTEIN; 20MM D-TRIS- REMARK 210 HCL(PH7.0); 100MM NACL; 1MM D- REMARK 210 DTT; 0.02% NAN3; 90% H2O, 10% REMARK 210 D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY, 3D_ REMARK 210 13C-SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : VNMR 6.1C, NMRPIPE 20031121, REMARK 210 NMRVIEW 5.0.4, KUJIRA 0.9816, REMARK 210 CYANA 2.0.17 REMARK 210 METHOD USED : NULL REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS, REMARK 210 STRUCTURES WITH THE LOWEST REMARK 210 ENERGY, TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 23 147.71 -174.70 REMARK 500 1 VAL A 30 97.34 -34.39 REMARK 500 1 GLU A 47 155.56 -38.86 REMARK 500 1 LYS A 48 51.20 -90.03 REMARK 500 1 GLU A 95 143.79 -34.56 REMARK 500 1 THR A 100 32.15 37.99 REMARK 500 1 GLN A 101 170.97 -47.03 REMARK 500 2 SER A 19 84.50 -68.27 REMARK 500 2 ALA A 27 125.92 -173.93 REMARK 500 2 VAL A 30 98.95 -36.69 REMARK 500 2 LEU A 39 -63.60 -97.08 REMARK 500 2 SER A 54 -37.34 -36.83 REMARK 500 2 SER A 55 60.90 -104.89 REMARK 500 2 ARG A 73 46.60 -77.82 REMARK 500 2 GLN A 94 107.83 -49.97 REMARK 500 2 GLU A 95 147.58 -35.23 REMARK 500 2 PRO A 106 -179.07 -69.77 REMARK 500 2 SER A 108 43.42 34.36 REMARK 500 3 VAL A 30 98.44 -35.94 REMARK 500 3 VAL A 38 157.14 -42.81 REMARK 500 3 ALA A 50 109.05 -47.52 REMARK 500 3 ARG A 73 88.68 -60.40 REMARK 500 3 PRO A 106 -179.87 -69.75 REMARK 500 4 SER A 19 101.67 -56.27 REMARK 500 4 VAL A 30 98.07 -35.42 REMARK 500 4 LEU A 39 -63.07 -105.43 REMARK 500 4 SER A 62 42.63 -90.35 REMARK 500 4 GLU A 95 140.15 -36.34 REMARK 500 4 GLN A 99 50.61 -94.59 REMARK 500 5 VAL A 11 123.70 -37.78 REMARK 500 5 VAL A 30 98.11 -35.44 REMARK 500 5 PRO A 31 -178.42 -69.82 REMARK 500 5 ASP A 40 151.31 -36.97 REMARK 500 5 LYS A 48 -70.10 -38.41 REMARK 500 5 ALA A 50 146.22 -174.02 REMARK 500 5 ASN A 64 31.05 -84.05 REMARK 500 5 SER A 76 137.61 -35.83 REMARK 500 5 GLN A 99 44.11 -96.64 REMARK 500 5 LEU A 102 28.40 48.22 REMARK 500 6 VAL A 30 99.52 -37.53 REMARK 500 6 ASP A 40 159.00 -40.21 REMARK 500 6 ALA A 50 157.28 -45.34 REMARK 500 6 SER A 62 41.15 -88.12 REMARK 500 6 ASN A 64 30.67 -84.01 REMARK 500 6 ARG A 73 156.58 -45.30 REMARK 500 7 SER A 2 149.17 -34.89 REMARK 500 7 VAL A 11 137.41 -36.48 REMARK 500 7 VAL A 30 100.20 -37.25 REMARK 500 7 ASP A 40 160.36 -43.71 REMARK 500 7 GLU A 47 157.03 -49.87 REMARK 500 7 SER A 54 47.42 -81.36 REMARK 500 7 ALA A 75 91.01 -62.18 REMARK 500 7 SER A 76 125.66 -34.61 REMARK 500 8 ARG A 18 50.60 38.62 REMARK 500 8 PRO A 21 0.16 -69.76 REMARK 500 8 SER A 22 -49.68 -133.85 REMARK 500 8 VAL A 30 99.24 -37.18 REMARK 500 8 LEU A 39 -177.83 -62.38 REMARK 500 8 ASP A 40 156.82 -44.16 REMARK 500 8 ARG A 73 160.57 -48.80 REMARK 500 8 LEU A 102 54.73 32.57 REMARK 500 9 SER A 23 131.79 -174.52 REMARK 500 9 VAL A 30 96.79 -33.64 REMARK 500 9 ASP A 40 158.99 -42.77 REMARK 500 9 ALA A 50 174.03 -58.95 REMARK 500 9 PRO A 53 -168.44 -69.75 REMARK 500 9 SER A 62 34.68 -87.07 REMARK 500 9 GLN A 94 115.63 -39.65 REMARK 500 9 GLN A 99 49.65 -79.37 REMARK 500 9 THR A 100 155.24 -45.33 REMARK 500 9 GLN A 101 102.31 -43.79 REMARK 500 9 ASP A 103 128.97 -36.66 REMARK 500 10 SER A 5 -51.52 -129.05 REMARK 500 10 VAL A 30 98.63 -36.24 REMARK 500 10 VAL A 38 146.18 -36.47 REMARK 500 10 LYS A 48 80.27 -69.60 REMARK 500 10 GLU A 51 -49.16 -133.44 REMARK 500 10 GLU A 95 144.14 -37.73 REMARK 500 10 THR A 100 40.69 -88.51 REMARK 500 11 SER A 5 148.59 -34.93 REMARK 500 11 VAL A 11 148.32 -35.16 REMARK 500 11 ARG A 18 95.84 -33.28 REMARK 500 11 SER A 19 -178.73 -61.78 REMARK 500 11 PRO A 31 -176.06 -69.78 REMARK 500 11 GLU A 47 109.06 -57.43 REMARK 500 11 SER A 54 42.27 -85.58 REMARK 500 11 LYS A 72 78.04 -109.98 REMARK 500 11 ARG A 73 133.46 -34.67 REMARK 500 11 GLU A 86 -34.63 -39.48 REMARK 500 11 GLU A 95 161.83 -49.06 REMARK 500 11 SER A 98 86.98 -69.08 REMARK 500 11 LEU A 102 -55.29 -125.22 REMARK 500 12 SER A 5 147.23 -35.50 REMARK 500 12 SER A 19 157.24 -49.05 REMARK 500 12 VAL A 30 96.49 -33.12 REMARK 500 12 VAL A 38 131.57 -37.14 REMARK 500 12 LYS A 48 137.60 -38.90 REMARK 500 12 PRO A 53 3.21 -69.74 REMARK 500 12 THR A 100 40.28 34.85 REMARK 500 12 GLN A 101 51.13 36.45 REMARK 500 12 SER A 107 145.66 -37.99 REMARK 500 12 SER A 108 -53.06 -126.49 REMARK 500 13 SER A 3 48.56 35.78 REMARK 500 13 SER A 19 97.69 -59.49 REMARK 500 13 VAL A 30 109.29 -41.40 REMARK 500 13 PRO A 31 -178.06 -69.70 REMARK 500 13 LEU A 39 -63.82 -91.76 REMARK 500 13 LYS A 48 40.18 -82.19 REMARK 500 13 SER A 54 31.53 -85.92 REMARK 500 13 GLN A 94 116.39 -38.80 REMARK 500 13 GLU A 95 151.28 -43.85 REMARK 500 13 THR A 100 -66.56 -129.57 REMARK 500 14 ALA A 27 124.15 -173.39 REMARK 500 14 VAL A 30 109.21 -57.13 REMARK 500 14 GLU A 47 157.28 -42.91 REMARK 500 14 SER A 54 49.36 -90.20 REMARK 500 14 SER A 55 -42.72 -131.14 REMARK 500 14 LEU A 102 41.61 -86.98 REMARK 500 15 SER A 2 94.07 -52.56 REMARK 500 15 VAL A 11 145.05 -39.58 REMARK 500 15 ALA A 27 124.07 -170.47 REMARK 500 15 VAL A 30 106.15 -49.30 REMARK 500 15 SER A 62 44.94 -87.67 REMARK 500 15 GLN A 101 95.74 -52.10 REMARK 500 15 PRO A 106 84.08 -69.75 REMARK 500 16 SER A 19 170.71 -52.26 REMARK 500 16 VAL A 30 109.11 -42.21 REMARK 500 16 ASP A 40 154.88 -44.00 REMARK 500 16 ALA A 50 142.55 -174.81 REMARK 500 16 ARG A 73 51.58 36.76 REMARK 500 16 SER A 98 124.37 -35.39 REMARK 500 17 VAL A 30 101.19 -40.22 REMARK 500 17 PRO A 31 -170.22 -69.77 REMARK 500 17 SER A 55 43.78 -85.34 REMARK 500 17 ASN A 64 31.22 -93.50 REMARK 500 17 ARG A 73 97.07 -33.56 REMARK 500 17 GLN A 94 137.13 -38.60 REMARK 500 18 ARG A 18 50.56 35.18 REMARK 500 18 PRO A 53 0.08 -69.77 REMARK 500 18 ALA A 75 101.42 -42.94 REMARK 500 18 SER A 76 122.18 -34.74 REMARK 500 18 GLN A 99 100.34 -53.40 REMARK 500 18 THR A 100 -74.02 -62.72 REMARK 500 18 LEU A 102 50.78 -107.89 REMARK 500 18 PRO A 106 93.06 -69.77 REMARK 500 19 SER A 2 41.22 -100.93 REMARK 500 19 VAL A 30 106.71 -50.67 REMARK 500 19 LEU A 39 -64.73 -97.78 REMARK 500 19 SER A 54 39.73 -88.15 REMARK 500 19 ARG A 73 55.08 -92.10 REMARK 500 19 GLU A 95 150.08 -43.26 REMARK 500 19 LEU A 102 124.78 -171.28 REMARK 500 19 SER A 107 118.96 -38.34 REMARK 500 19 SER A 108 104.74 -56.42 REMARK 500 20 SER A 5 43.26 -102.02 REMARK 500 20 VAL A 11 132.15 -34.31 REMARK 500 20 VAL A 30 100.41 -38.23 REMARK 500 20 SER A 35 45.64 38.53 REMARK 500 20 ASP A 40 156.44 -39.67 REMARK 500 20 HIS A 46 114.64 -166.71 REMARK 500 20 GLU A 47 148.55 -39.44 REMARK 500 20 ARG A 73 39.75 -82.59 REMARK 500 20 SER A 108 167.20 -49.60 REMARK 500 REMARK 500 REMARK: NULL
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSO002002342.2 RELATED DB: TARGETDB
DBREF 2E7H A 8 103 UNP P54760 EPHB4_HUMAN 434 529
SEQADV 2E7H GLY A 1 UNP P54760 CLONING ARTIFACT SEQADV 2E7H SER A 2 UNP P54760 CLONING ARTIFACT SEQADV 2E7H SER A 3 UNP P54760 CLONING ARTIFACT SEQADV 2E7H GLY A 4 UNP P54760 CLONING ARTIFACT SEQADV 2E7H SER A 5 UNP P54760 CLONING ARTIFACT SEQADV 2E7H SER A 6 UNP P54760 CLONING ARTIFACT SEQADV 2E7H GLY A 7 UNP P54760 CLONING ARTIFACT SEQADV 2E7H SER A 104 UNP P54760 CLONING ARTIFACT SEQADV 2E7H GLY A 105 UNP P54760 CLONING ARTIFACT SEQADV 2E7H PRO A 106 UNP P54760 CLONING ARTIFACT SEQADV 2E7H SER A 107 UNP P54760 CLONING ARTIFACT SEQADV 2E7H SER A 108 UNP P54760 CLONING ARTIFACT SEQADV 2E7H GLY A 109 UNP P54760 CLONING ARTIFACT
SEQRES 1 A 109 GLY SER SER GLY SER SER GLY PRO PRO ALA VAL SER ASP SEQRES 2 A 109 ILE ARG VAL THR ARG SER SER PRO SER SER LEU SER LEU SEQRES 3 A 109 ALA TRP ALA VAL PRO ARG ALA PRO SER GLY ALA VAL LEU SEQRES 4 A 109 ASP TYR GLU VAL LYS TYR HIS GLU LYS GLY ALA GLU GLY SEQRES 5 A 109 PRO SER SER VAL ARG PHE LEU LYS THR SER GLU ASN ARG SEQRES 6 A 109 ALA GLU LEU ARG GLY LEU LYS ARG GLY ALA SER TYR LEU SEQRES 7 A 109 VAL GLN VAL ARG ALA ARG SER GLU ALA GLY TYR GLY PRO SEQRES 8 A 109 PHE GLY GLN GLU HIS HIS SER GLN THR GLN LEU ASP SER SEQRES 9 A 109 GLY PRO SER SER GLY
SHEET 1 A 3 ARG A 15 SER A 20 0 SHEET 2 A 3 SER A 23 ALA A 27 -1 O ALA A 27 N ARG A 15 SHEET 3 A 3 ARG A 65 ARG A 69 -1 O ALA A 66 N LEU A 26 SHEET 1 B 4 ARG A 57 THR A 61 0 SHEET 2 B 4 ASP A 40 GLU A 47 -1 N TYR A 41 O THR A 61 SHEET 3 B 4 TYR A 77 ARG A 84 -1 O ARG A 84 N ASP A 40 SHEET 4 B 4 HIS A 96 HIS A 97 -1 O HIS A 96 N VAL A 79
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000