10 20 30 40 50 60 70 80 2E72 - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 05-JAN-07 2E72
TITLE SOLUTION STRUCTURE OF THE ZINC FINGER DOMAIN OF HUMAN TITLE 2 KIAA0461
COMPND MOL_ID: 1; COMPND 2 MOLECULE: POGO TRANSPOSABLE ELEMENT WITH ZNF DOMAIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: ZINC FINGER DOMAIN; COMPND 5 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: POGZ, KIAA0461; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P050912-02; SOURCE 8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS
KEYWDS ZINC FINGER DOMAIN, STRUCTURAL GENOMICS, NPPSFA, NATIONAL KEYWDS 2 PROJECT ON PROTEIN STRUCTURAL AND FUNCTIONAL ANALYSES, KEYWDS 3 RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI, KEYWDS 4 UNKNOWN FUNCTION
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR W.TANABE,S.SUZUKI,Y.MUTO,M.INOUE,T.KIGAWA,T.TERADA, AUTHOR 2 M.SHIROUZU,S.YOKOYAMA,RIKEN STRUCTURAL GENOMICS/PROTEOMICS AUTHOR 3 INITIATIVE (RSGI)
REVDAT 2 24-FEB-09 2E72 1 VERSN REVDAT 1 10-JUL-07 2E72 0
JRNL AUTH W.TANABE,S.SUZUKI,Y.MUTO,M.INOUE,T.KIGAWA,T.TERADA, JRNL AUTH 2 M.SHIROUZU,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE ZINC FINGER DOMAIN OF JRNL TITL 2 HUMAN KIAA0461 JRNL REF TO BE PUBLISHED JRNL REFN
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 2.0.17 REMARK 3 AUTHORS : GUNTERT, P. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 2E72 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 11-JAN-07. REMARK 100 THE RCSB ID CODE IS RCSB026306.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.31MM 13C-15N PROTEIN; 20MM REMARK 210 D-TRIS-HCL(PH7.0); 100MM NACL; REMARK 210 1MM D-DTT; 0.02% NAN3; 10% REMARK 210 D2O; 0.05MM ZNCL2+1MM IDA, 90% REMARK 210 H2O, 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY, 3D_ REMARK 210 13C-SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 700 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR 3.5, NMRPIPE REMARK 210 20031121, NMRVIEW 5.0.4, REMARK 210 NMRVIEW 0.9742, CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYANAMICS, REMARK 210 SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS, REMARK 210 STRUCTURES WITH THE LOWEST REMARK 210 ENERGY, TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 367 105.65 -51.61 REMARK 500 1 SER A 368 88.40 -62.66 REMARK 500 1 ARG A 374 102.46 -36.66 REMARK 500 1 PRO A 378 3.13 -69.75 REMARK 500 1 ARG A 379 -75.10 -106.11 REMARK 500 1 VAL A 402 101.11 -38.96 REMARK 500 2 PRO A 378 2.80 -69.82 REMARK 500 2 ARG A 379 -65.53 -106.42 REMARK 500 2 MET A 401 46.08 -89.63 REMARK 500 3 SER A 367 161.13 -45.49 REMARK 500 3 GLN A 370 166.64 -47.55 REMARK 500 3 ASP A 371 -51.89 -130.81 REMARK 500 3 PRO A 378 3.70 -69.77 REMARK 500 3 ASN A 381 25.48 40.97 REMARK 500 3 PRO A 399 3.11 -69.72 REMARK 500 3 SER A 406 154.61 -48.66 REMARK 500 4 SER A 368 41.93 -83.71 REMARK 500 4 PRO A 378 3.14 -69.69 REMARK 500 4 ARG A 379 -69.17 -104.97 REMARK 500 4 VAL A 402 106.50 -40.92 REMARK 500 5 SER A 364 147.79 -35.72 REMARK 500 5 PRO A 378 4.07 -69.72 REMARK 500 5 ASN A 381 28.47 37.70 REMARK 500 5 PRO A 399 0.62 -69.82 REMARK 500 5 MET A 401 43.84 -82.91 REMARK 500 6 PRO A 378 3.73 -69.80 REMARK 500 6 MET A 401 50.69 -97.03 REMARK 500 7 PRO A 378 4.75 -69.78 REMARK 500 7 ASN A 381 27.20 38.44 REMARK 500 7 MET A 401 47.65 -85.54 REMARK 500 7 VAL A 402 -52.13 -133.87 REMARK 500 8 PRO A 378 5.07 -69.78 REMARK 500 8 ASN A 381 33.57 34.13 REMARK 500 8 PRO A 399 0.96 -69.79 REMARK 500 8 MET A 401 76.39 -119.06 REMARK 500 8 GLU A 403 104.22 -42.53 REMARK 500 9 CYS A 377 119.61 -35.13 REMARK 500 9 PRO A 378 5.84 -69.78 REMARK 500 9 PRO A 399 0.44 -69.82 REMARK 500 9 MET A 401 70.41 -118.35 REMARK 500 10 PRO A 378 2.25 -69.81 REMARK 500 10 ARG A 379 -67.34 -106.21 REMARK 500 10 ASN A 381 47.62 70.07 REMARK 500 10 VAL A 402 118.65 -34.78 REMARK 500 10 GLU A 403 172.92 -48.09 REMARK 500 10 SER A 410 42.06 -92.57 REMARK 500 11 PRO A 378 5.16 -69.82 REMARK 500 11 ASN A 381 25.68 46.87 REMARK 500 11 HIS A 393 -39.20 -38.39 REMARK 500 11 VAL A 402 108.56 -49.22 REMARK 500 12 PRO A 378 2.72 -69.82 REMARK 500 12 ARG A 379 -64.02 -103.46 REMARK 500 12 ARG A 385 -55.57 -120.92 REMARK 500 12 PRO A 399 1.82 -69.74 REMARK 500 12 MET A 401 44.17 -79.67 REMARK 500 13 PRO A 378 4.38 -69.84 REMARK 500 13 ASN A 381 24.95 41.39 REMARK 500 13 GLU A 403 114.30 -36.77 REMARK 500 13 SER A 409 85.85 -69.34 REMARK 500 13 SER A 410 41.92 -105.64 REMARK 500 14 PRO A 378 5.41 -69.80 REMARK 500 14 ASN A 381 51.11 31.65 REMARK 500 14 CYS A 397 -75.22 -62.81 REMARK 500 14 CYS A 398 79.03 -110.69 REMARK 500 15 PRO A 378 2.81 -69.67 REMARK 500 15 ARG A 379 -68.82 -107.39 REMARK 500 15 ASN A 381 49.05 71.68 REMARK 500 15 ARG A 385 -62.11 -98.35 REMARK 500 16 SER A 368 109.25 -47.05 REMARK 500 16 ARG A 374 96.79 -60.32 REMARK 500 16 PRO A 378 5.49 -69.74 REMARK 500 16 ASN A 381 37.87 32.52 REMARK 500 16 VAL A 402 121.66 -39.08 REMARK 500 17 PRO A 378 4.47 -69.76 REMARK 500 17 ARG A 379 -65.09 -105.91 REMARK 500 17 MET A 401 48.70 -89.44 REMARK 500 17 GLU A 403 101.95 -50.51 REMARK 500 18 SER A 364 43.06 -80.96 REMARK 500 18 CYS A 377 116.55 -34.19 REMARK 500 18 PRO A 378 5.42 -69.74 REMARK 500 18 ARG A 379 -62.30 -100.19 REMARK 500 18 HIS A 393 -32.31 -35.25 REMARK 500 18 VAL A 402 127.48 -37.06 REMARK 500 19 SER A 364 87.01 -68.41 REMARK 500 19 PRO A 378 6.14 -69.77 REMARK 500 19 GLU A 403 104.92 -57.08 REMARK 500 19 SER A 409 -71.00 -80.52 REMARK 500 20 ASP A 371 103.07 -53.38 REMARK 500 20 PRO A 378 5.51 -69.78 REMARK 500 20 ASN A 381 34.11 34.86 REMARK 500 20 GLU A 388 -34.83 -34.98 REMARK 500 20 SER A 409 -60.73 -91.89 REMARK 500 REMARK 500 REMARK: NULL
REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 1 ZN A 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 377 SG REMARK 620 2 CYS A 380 SG 103.6 REMARK 620 3 HIS A 393 NE2 111.2 85.8 REMARK 620 4 CYS A 397 SG 117.9 118.3 115.3 REMARK 620 N 1 2 3
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 201
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSK002000449.1 RELATED DB: TARGETDB
DBREF 2E72 A 370 405 UNP Q7Z3K3 POGZ_HUMAN 370 405
SEQADV 2E72 GLY A 363 UNP Q7Z3K3 CLONING ARTIFACT SEQADV 2E72 SER A 364 UNP Q7Z3K3 CLONING ARTIFACT SEQADV 2E72 SER A 365 UNP Q7Z3K3 CLONING ARTIFACT SEQADV 2E72 GLY A 366 UNP Q7Z3K3 CLONING ARTIFACT SEQADV 2E72 SER A 367 UNP Q7Z3K3 CLONING ARTIFACT SEQADV 2E72 SER A 368 UNP Q7Z3K3 CLONING ARTIFACT SEQADV 2E72 GLY A 369 UNP Q7Z3K3 CLONING ARTIFACT SEQADV 2E72 SER A 406 UNP Q7Z3K3 CLONING ARTIFACT SEQADV 2E72 GLY A 407 UNP Q7Z3K3 CLONING ARTIFACT SEQADV 2E72 PRO A 408 UNP Q7Z3K3 CLONING ARTIFACT SEQADV 2E72 SER A 409 UNP Q7Z3K3 CLONING ARTIFACT SEQADV 2E72 SER A 410 UNP Q7Z3K3 CLONING ARTIFACT SEQADV 2E72 GLY A 411 UNP Q7Z3K3 CLONING ARTIFACT
SEQRES 1 A 49 GLY SER SER GLY SER SER GLY GLN ASP GLY GLY ARG LYS SEQRES 2 A 49 ILE CYS PRO ARG CYS ASN ALA GLN PHE ARG VAL THR GLU SEQRES 3 A 49 ALA LEU ARG GLY HIS MET CYS TYR CYS CYS PRO GLU MET SEQRES 4 A 49 VAL GLU TYR GLN SER GLY PRO SER SER GLY
HET ZN A 201 1
HETNAM ZN ZINC ION
FORMUL 2 ZN ZN 2+
HELIX 1 1 VAL A 386 CYS A 398 1 13
LINK ZN ZN A 201 SG CYS A 377 1555 1555 2.34 LINK ZN ZN A 201 SG CYS A 380 1555 1555 2.33 LINK ZN ZN A 201 NE2 HIS A 393 1555 1555 2.37 LINK ZN ZN A 201 SG CYS A 397 1555 1555 2.33
CISPEP 1 GLY A 407 PRO A 408 1 0.10 CISPEP 2 GLY A 407 PRO A 408 2 0.08 CISPEP 3 GLY A 407 PRO A 408 3 0.05 CISPEP 4 GLY A 407 PRO A 408 4 0.09 CISPEP 5 GLY A 407 PRO A 408 5 0.05 CISPEP 6 GLY A 407 PRO A 408 6 0.01 CISPEP 7 GLY A 407 PRO A 408 7 0.00 CISPEP 8 GLY A 407 PRO A 408 8 0.13 CISPEP 9 GLY A 407 PRO A 408 9 -0.01 CISPEP 10 GLY A 407 PRO A 408 10 0.10 CISPEP 11 GLY A 407 PRO A 408 11 0.11 CISPEP 12 GLY A 407 PRO A 408 12 0.02 CISPEP 13 GLY A 407 PRO A 408 13 0.11 CISPEP 14 GLY A 407 PRO A 408 14 0.03 CISPEP 15 GLY A 407 PRO A 408 15 0.00 CISPEP 16 GLY A 407 PRO A 408 16 0.05 CISPEP 17 GLY A 407 PRO A 408 17 0.02 CISPEP 18 GLY A 407 PRO A 408 18 0.05 CISPEP 19 GLY A 407 PRO A 408 19 0.07 CISPEP 20 GLY A 407 PRO A 408 20 0.11
SITE 1 AC1 4 CYS A 377 CYS A 380 HIS A 393 CYS A 397
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000