10 20 30 40 50 60 70 80 2E4E - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER DE NOVO PROTEIN 06-DEC-06 2E4E
TITLE NMR STRUCTURE OF D4P/K7G MUTANT OF GPM12
COMPND MOL_ID: 1; COMPND 2 MOLECULE: GPM12; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: CHIGNOLIN; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES
SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 OTHER_DETAILS: CHEMICAL PEPTIDE SYNTHESIS
KEYWDS BETA-HAIRPIN, MINI-PROTEIN, CHIGNOLIN, B1 DOMAIN OF PROTEIN KEYWDS 2 G, DE NOVO PROTEIN
EXPDTA SOLUTION NMR
NUMMDL 23
AUTHOR T.TERADA,D.SATOH,T.MIKAWA,Y.ITO,K.SHIMIZU
REVDAT 2 24-FEB-09 2E4E 1 VERSN REVDAT 1 05-FEB-08 2E4E 0
JRNL AUTH T.TERADA,D.SATOH,T.MIKAWA,Y.ITO,K.SHIMIZU JRNL TITL UNDERSTANDING THE ROLES OF AMINO ACID RESIDUES IN JRNL TITL 2 TERTIARY STRUCTURE FORMATION OF CHIGNOLIN BY USING JRNL TITL 3 MOLECULAR DYNAMICS SIMULATION JRNL REF TO BE PUBLISHED JRNL REFN
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 KUNSTLEVE,JIANG,KUSZEWSKI,NILGES, PANNU,READ, REMARK 3 RICE,SIMONSON,WARREN REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE STRUCTURES ARE BASED ON 119 NOE- REMARK 3 DERIVED DISTANCE CONSTRAINTS.
REMARK 4 REMARK 4 2E4E COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 14-DEC-06. REMARK 100 THE RCSB ID CODE IS RCSB026210.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 277 REMARK 210 PH : 5.5 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : 1ATM REMARK 210 SAMPLE CONTENTS : 2MM GPM12(D4P/K7G) REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D NOESY, 2D TOCSY, 2D ROESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : DRX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR 3.5, AZARA 2.7, ANSIG REMARK 210 3.3 FOR OPENGL VERSION 1.0.6, REMARK 210 CNS 1.1 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 23 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THIS STRUCTURE WAS DETERMINED USING STANDARD 2D REMARK 210 HOMONUCLEAR TECHNIQUES.
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 THR A 8 -137.71 -113.44 REMARK 500 1 PHE A 9 10.41 -141.68 REMARK 500 2 THR A 8 -138.60 -119.39 REMARK 500 3 THR A 8 -138.18 -119.00 REMARK 500 4 THR A 8 -137.16 -115.24 REMARK 500 5 THR A 8 -137.68 -115.90 REMARK 500 5 PHE A 9 10.11 -142.20 REMARK 500 6 THR A 8 -138.24 -112.61 REMARK 500 7 THR A 8 -138.24 -113.21 REMARK 500 7 PHE A 9 10.49 -140.88 REMARK 500 8 THR A 8 -137.39 -119.00 REMARK 500 9 THR A 8 -137.53 -116.31 REMARK 500 9 PHE A 9 10.58 -140.69 REMARK 500 10 THR A 8 -137.61 -119.71 REMARK 500 11 THR A 8 -137.28 -121.13 REMARK 500 12 THR A 8 -137.20 -118.51 REMARK 500 13 THR A 8 -137.46 -118.27 REMARK 500 14 THR A 8 -137.55 -123.85 REMARK 500 15 THR A 8 -138.05 -116.17 REMARK 500 15 PHE A 9 10.46 -140.38 REMARK 500 16 THR A 8 -137.49 -117.34 REMARK 500 17 THR A 8 -138.57 -116.29 REMARK 500 18 THR A 8 -137.28 -117.18 REMARK 500 18 PHE A 9 10.01 -141.14 REMARK 500 19 THR A 8 -138.00 -113.18 REMARK 500 20 THR A 8 -137.18 -119.00 REMARK 500 21 THR A 8 -137.86 -110.95 REMARK 500 21 PHE A 9 10.25 -144.25 REMARK 500 22 THR A 8 -137.90 -115.13 REMARK 500 22 PHE A 9 10.23 -140.13 REMARK 500 23 THR A 8 -137.53 -120.32 REMARK 500 REMARK 500 REMARK: NULL
REMARK 999 REMARK 999 SEQUENCE REMARK 999 THERE ARE MUTANTS D4P, K7G. THESE MUTATIONS CONVERT REMARK 999 THE DISORDERD STRUCTURE OF GPM12 INTO A CHIGNOLIN-LIKE REMARK 999 ORDERED STRUCTURE. REMARK 999 SEQUENCE OF RESIDUES 2-9 OF GPM12 IS THE SAME AS REMARK 999 THAT OF RESIDUES 45-52 OF THE B1 DOMAIN OF PROTEIN G.
DBREF 2E4E A 1 10 PDB 2E4E 2E4E 1 10
SEQRES 1 A 10 GLY TYR ASP PRO ALA THR GLY THR PHE GLY
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000