2E0F - Header Asymmetric Unit

HEADER DUMMY FOR WHATIF 06-OCT-06 2E0F

TITLE D-AMINO ACID OXIDASE [NOCARDIOIDES SP. JS614]

COMPND MOL_ID: 1; COMPND 2 MOLECULE: D-AMINO ACID OXIDASE [NOCARDIOIDES SP. JS614]; COMPND 3 CHAIN: NULL; COMPND 4 FRAGMENT: D-AMINO ACID OXIDASE [NOCARDIOIDES SP. JS614]; COMPND 5 EC: 1.4.3.3.; COMPND 6 MUTATION: YES

SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: D-AMINO ACID OXIDASE [NOCARDIOIDES SOURCE 3 SP. JS614].; SOURCE 4 STRAIN: D-AMINO ACID OXIDASE [NOCARDIOIDES SP. JS614]; SOURCE 5 OTHER_DETAILS: D-AMINO ACID OXIDASE [NOCARDIOIDES SP. SOURCE 6 JS614]

KEYWDS D-AMINO ACID OXIDASE [NOCARDIOIDES SP. JS614]

EXPDTA THEORETICAL MODEL

AUTHOR P.BHATTACHARYA,T.GANESHAN

REVDAT 1 24-OCT-06 2E0F 0

JRNL AUTH P.BHATTACHARYA,T.GANESHAN

REMARK 1

REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.

REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NULL REMARK 3 AUTHORS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: A 3D MODEL OF D-AMINO ACID OXIDASE REMARK 3 [NOCARDIOIDES SP. JS614] HAS BEEN BUILT USING THE 3D STRUCTURE REMARK 3 OF 1C0P(PDB ID) CHAIN 'A' AS TEMPLATE WITH ESYPRED3D REMARK 3 PROGRAM(WHICH USED MODELLER PROGRAM). THIS TEMPLATE SHARES REMARK 3 30.0% IDENTITIES WITH D-AMINO ACID OXIDASE [NOCARDIOIDES SP. REMARK 3 JS614] SEQUENCE (USING THE ALIGN PROGRAM. THE TEMPLATE WAS REMARK 3 CHOSEN FROM PSI-BLAST LINKED WITH SEVERAL PROTEIN REMARK 3 DATABASES(PDB,SWISS-PROT, IPI, ETC).THE MODEL WAS VERIFIED REMARK 3 WITH WHATIF, VERIFY 3D, GROMOS, ANOLEA, PROCHECK ETC PROGRAMS, REMARK 3 AND VIEWED WITH DEEPVIEW(PDB VIEWER), RASMOL AND VMD 1.84 REMARK 3 PROGRAMS.

REMARK 4 REMARK 4 2E0F COMPLIES WITH FORMAT V. 2.3, 09-JULY-1998

REMARK 100 REMARK 100 THIS ENTRY WAS DEPOSITED AT OSAKA ON 06-OCT-2006. REMARK 100 THE RCSB ID CODE IS RCSB026069.

REMARK 220 REMARK 220 EXPERIMENTAL DETAILS REMARK 220 EXPERIMENT TYPE : THEORETICAL MODELLING REMARK 220 REMARK 220 REMARK: PROTEIN SEQUENCE ID ZP_00659314 360 AA REMARK 220 LINEAR BCT 28-JUL-2005 DEFINITION D-AMINO ACID OXIDASE REMARK 220 [NOCARDIOIDES SP. JS614]. ACCESSION ZP_00659314 VERSION REMARK 220 ZP_00659314.1 GI:71368832 DBSOURCE REFSEQ: ACCESSION NZ_ REMARK 220 AAJB01000073.1 KEYWORDS . SOURCE NOCARDIOIDES SP. JS614 REMARK 220 ORGANISM NOCARDIOIDES SP. JS614 BACTERIA; REMARK 220 ACTINOBACTERIA; ACTINOBACTERIDAE; ACTINOMYCETALES; REMARK 220 PROPIONIBACTERINEAE; NOCARDIOIDACEAE; NOCARDIOIDES. REMARK 220 REFERENCE 1 (RESIDUES 1 TO 360) AUTHORS COPELAND,A., REMARK 220 LUCAS,S., LAPIDUS,A., BARRY,K., DETTER,J.C., GLAVINA,T., REMARK 220 HAMMON,N., ISRANI,S., PITLUCK,S. AND RICHARDSON,P. REMARK 220 CONSRTM US DOE JOINT GENOME INSTITUTE (JGI-PGF) TITLE REMARK 220 SEQUENCING OF THE DRAFT GENOME AND ASSEMBLY OF REMARK 220 NOCARDIOIDES SP. JS614 JOURNAL UNPUBLISHED REFERENCE 2 REMARK 220 (RESIDUES 1 TO 360) AUTHORS LARIMER,F. AND LAND,M. REMARK 220 CONSRTM US DOE JOINT GENOME INSTITUTE (JGI-ORNL) TITLE REMARK 220 ANNOTATION OF THE DRAFT GENOME ASSEMBLY OF NOCARDIOIDES REMARK 220 SP. JS614 JOURNAL UNPUBLISHED REFERENCE 3 (RESIDUES 1 TO REMARK 220 360) AUTHORS COPELAND,A., LUCAS,S., LAPIDUS,A., BARRY, REMARK 220 K., DETTER,J.C., GLAVINA,T., HAMMON,N., ISRANI,S., REMARK 220 PITLUCK,S. AND RICHARDSON,P. CONSRTM US DOE JOINT GENOME REMARK 220 INSTITUTE (JGI-PGF) TITLE DIRECT SUBMISSION JOURNAL REMARK 220 SUBMITTED (26-JUL-2005) US DOE JOINT GENOME INSTITUTE, REMARK 220 2800 MITCHELL DRIVE, WALNUT CREEK, CA 94598, USA COMMENT REMARK 220 PREDICTED REFSEQ: THE MRNA RECORD IS SUPPORTED BY REMARK 220 EXPERIMENTAL EVIDENCE; HOWEVER, THE CODING SEQUENCE IS REMARK 220 PREDICTED. THE REFERENCE SEQUENCE WAS DERIVED FROM REMARK 220 EAO05874. URL -- HTTP://WWW.JGI.DOE.GOV SOURCE DNA AND REMARK 220 BACTERIA AVAILABLE FROM JAMES GOSSETT (JMG18@ REMARK 220 CORNELL.EDU) WHOLE GENOME SEQUENCING AND DRAFT ASSEMBLY REMARK 220 AT JGI-PGF ANNOTATION BY JGI-ORNL CONTACT: PAUL REMARK 220 RICHARDSON (MICROBES@CUBA.JGI-PSF.ORG). METHOD: REMARK 220 CONCEPTUAL TRANSLATION. THIS THEORETICAL MODEL ENTRY WAS REMARK 220 NOT ANNOTATED AND NOT VALIDATED BY THE WWPDB STAFF AND REMARK 220 THEREFORE MAY NOT CONFORM TO THE PDB FORMAT.

REMARK 225 REMARK 225 THEORETICAL MODEL REMARK 225 THE COORDINATES IN THIS ENTRY REPRESENT A MODEL STRUCTURE. REMARK 225 PROTEIN DATA BANK CONVENTIONS REQUIRE THAT CRYST1 AND REMARK 225 SCALE RECORDS BE INCLUDED, BUT THE VALUES ON THESE REMARK 225 RECORDS ARE MEANINGLESS.

REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET 1 REMARK 465 THR 2 REMARK 465 ARG 302 REMARK 465 GLY 303 REMARK 465 GLN 304 REMARK 465 ARG 305 REMARK 465 GLY 306 REMARK 465 GLY 307 REMARK 465 SER 308 REMARK 465 ARG 309 REMARK 465 ARG 310 REMARK 465 VAL 311 REMARK 465 THR 312 REMARK 465 ALA 313 REMARK 465 THR 314 REMARK 465 THR 315 REMARK 465 ALA 316 REMARK 465 GLY 317 REMARK 465 THR 318 REMARK 465 ARG 319 REMARK 465 ILE 320 REMARK 465 ALA 321 REMARK 465 PRO 322 REMARK 465 TYR 323 REMARK 465 THR 324 REMARK 465 CYS 325 REMARK 465 GLY 326 REMARK 465 LYS 327 REMARK 465 VAL 328 REMARK 465 SER 329 REMARK 465 ALA 330 REMARK 465 THR 331 REMARK 465 SER 332 REMARK 465 GLY 333 REMARK 465 ALA 334 REMARK 465 GLY 335 REMARK 465 GLY 336 REMARK 465 SER 337 REMARK 465 SER 338 REMARK 465 ALA 339 REMARK 465 THR 340 REMARK 465 GLY 341 REMARK 465 THR 342 REMARK 465 PRO 343 REMARK 465 SER 344 REMARK 465 ARG 345 REMARK 465 SER 346 REMARK 465 VAL 347 REMARK 465 SER 348 REMARK 465 ILE 349 REMARK 465 SER 350 REMARK 465 SER 351 REMARK 465 SER 352 REMARK 465 THR 353 REMARK 465 SER 354 REMARK 465 GLY 355 REMARK 465 SER 356 REMARK 465 SER 357 REMARK 465 THR 358 REMARK 465 SER 359 REMARK 465 ALA 360

REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS(M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLY 301 O

REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 0 RELATED DB: BMCD REMARK 900 0 REMARK 900 RELATED ID: 0 RELATED DB: BMRB REMARK 900 0 REMARK 900 RELATED ID: 0 RELATED DB: EMDB REMARK 900 0 REMARK 900 RELATED ID: 0 RELATED DB: NDB REMARK 900 0 REMARK 900 RELATED ID: 0 RELATED DB: PDB REMARK 900 0 REMARK 900 RELATED ID: 0 RELATED DB: TARGETDB REMARK 900 0

SEQRES 1 360 MET THR ASP ARG VAL ILE VAL VAL GLY ALA GLY VAL ILE SEQRES 2 360 GLY LEU THR CYS ALA VAL ARG LEU LEU GLN ALA GLY HIS SEQRES 3 360 ARG VAL ASP VAL VAL ALA ARG ASP LEU PRO LEU GLU THR SEQRES 4 360 THR SER ALA VAL ALA GLY ALA PHE TRP TYR PRO TYR ARG SEQRES 5 360 ALA LEU PRO GLN ASP ARG VAL ALA ALA TRP SER ALA THR SEQRES 6 360 SER TYR ALA VAL PHE ASP ALA LEU ALA ASP THR ASP PRO SEQRES 7 360 GLU SER GLY VAL ARG MET VAL ALA GLY THR GLU VAL PHE SEQRES 8 360 MET ALA PRO GLU PRO ASP PRO TRP TRP GLY ALA ALA VAL SEQRES 9 360 PRO GLY LEU THR ARG THR ARG ASP VAL PRO PRO GLY TRP SEQRES 10 360 VAL ASP GLY TRP THR PHE THR THR PRO VAL VAL ASP THR SEQRES 11 360 GLY VAL TYR LEU ALA TRP LEU ALA GLY ARG VAL GLU GLN SEQRES 12 360 LEU GLY GLY THR ILE THR ARG LEU ASN LEU SER ALA LEU SEQRES 13 360 PRO SER GLY PRO GLY LEU VAL VAL ASN CYS ALA GLY LEU SEQRES 14 360 GLY ALA ARG LEU LEU GLY ALA ASP ARG THR VAL VAL PRO SEQRES 15 360 VAL ARG GLY GLN VAL VAL VAL VAL GLU GLN THR GLY ILE SEQRES 16 360 ASP ARG TRP TRP LEU ASP ARG SER GLY PRO THR TYR VAL SEQRES 17 360 VAL PRO ARG GLU HIS ASP VAL VAL VAL GLY GLY THR ASP SEQRES 18 360 VAL GLU GLY GLU TRP SER ARG THR PRO SER PRO ALA THR SEQRES 19 360 ALA GLU ALA ILE LEU GLU ARG ALA THR ARG LEU VAL PRO SEQRES 20 360 GLY LEU ARG GLY ALA ARG VAL LEU ARG HIS ARG VAL GLY SEQRES 21 360 LEU ARG PRO VAL ARG PRO ALA VAL ARG LEU ASP ARG VAL SEQRES 22 360 GLY ASP VAL VAL HIS CYS TYR GLY ALA ARG ARG ARG ARG SEQRES 23 360 GLY HIS PRO GLU LEU GLY CYS GLY ARG ARG GLY GLY ARG SEQRES 24 360 ALA GLY ARG GLY GLN ARG GLY GLY SER ARG ARG VAL THR SEQRES 25 360 ALA THR THR ALA GLY THR ARG ILE ALA PRO TYR THR CYS SEQRES 26 360 GLY LYS VAL SER ALA THR SER GLY ALA GLY GLY SER SER SEQRES 27 360 ALA THR GLY THR PRO SER ARG SER VAL SER ILE SER SER SEQRES 28 360 SER THR SER GLY SER SER THR SER ALA

HELIX 1 1 GLY 11 GLY 25 1 15 HELIX 2 2 ARG 58 ALA 74 1 17 HELIX 3 3 ASP 129 GLY 145 1 17 HELIX 4 4 ALA 167 LEU 173 5 7 HELIX 5 5 SER 231 VAL 246 1 16 HELIX 6 6 ARG 286 ARG 299 1 14

SHEET 1 A12 ASP 119 VAL 127 0 SHEET 2 A12 ARG 83 MET 92 -1 N VAL 85 O THR 125 SHEET 3 A12 TRP 198 ASP 201 1 O TRP 199 N GLU 89 SHEET 4 A12 THR 206 PRO 210 -1 O VAL 208 N TRP 198 SHEET 5 A12 VAL 215 GLY 218 -1 O GLY 218 N TYR 207 SHEET 6 A12 VAL 181 VAL 190 -1 N VAL 190 O VAL 215 SHEET 7 A12 VAL 254 VAL 273 -1 O GLY 260 N GLY 185 SHEET 8 A12 VAL 276 ALA 282 -1 O VAL 276 N VAL 273 SHEET 9 A12 LEU 162 ASN 165 1 N ASN 165 O VAL 277 SHEET 10 A12 ARG 4 VAL 8 1 N VAL 8 O VAL 164 SHEET 11 A12 ARG 27 ALA 32 1 O ARG 27 N VAL 5 SHEET 12 A12 THR 147 ARG 150 1 O THR 147 N VAL 30 SHEET 1 B 7 ASP 119 VAL 127 0 SHEET 2 B 7 ARG 83 MET 92 -1 N VAL 85 O THR 125 SHEET 3 B 7 TRP 198 ASP 201 1 O TRP 199 N GLU 89 SHEET 4 B 7 THR 206 PRO 210 -1 O VAL 208 N TRP 198 SHEET 5 B 7 VAL 215 GLY 218 -1 O GLY 218 N TYR 207 SHEET 6 B 7 VAL 181 VAL 190 -1 N VAL 190 O VAL 215 SHEET 7 B 7 VAL 222 GLU 223 -1 O VAL 222 N ARG 184

CISPEP 1 GLY 218 GLY 219 0 0.61

CRYST1 1000.000 1000.000 1000.000 90.00 90.00 90.00 P 1 1

ORIGX1 1.000000 0.000000 0.000000 0.00000

ORIGX2 0.000000 1.000000 0.000000 0.00000

ORIGX3 0.000000 0.000000 1.000000 0.00000

SCALE1 0.001000 0.000000 0.000000 0.00000

SCALE2 0.000000 0.001000 0.000000 0.00000

SCALE3 0.000000 0.000000 0.001000 0.00000