2E0E - Header Asymmetric Unit

HEADER DUMMY FOR WHATIF 06-OCT-06 2E0E

TITLE D AMINO ACID OXIDASE (DAO) FAMILY PROTEIN [PHOTOBACTERIUM TITLE 2 SP. SKA34]

COMPND MOL_ID: 1; COMPND 2 MOLECULE: D AMINO ACID OXIDASE (DAO) FAMILY PROTEIN COMPND 3 [PHOTOBACTERIUM SP. SKA34]; COMPND 4 CHAIN: NULL; COMPND 5 FRAGMENT: D AMINO ACID OXIDASE (DAO) FAMILY PROTEIN COMPND 6 [PHOTOBACTERIUM SP.; COMPND 7 EC: 1.4.3.3.; COMPND 8 MUTATION: YES

SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PHOTOBACTERIUM SP.SKA34; SOURCE 3 STRAIN: D AMINO ACID OXIDASE (DAO) FAMILY PROTEIN SOURCE 4 [PHOTOBACTERIUM SP. SKA34].; SOURCE 5 OTHER_DETAILS: D AMINO ACID OXIDASE (DAO) FAMILY PROTEIN SOURCE 6 [PHOTOBACTERIUM SP. SKA34].

KEYWDS D AMINO ACID OXIDASE (DAO) FAMILY PROTEIN [PHOTOBACTERIUM KEYWDS 2 SP. SKA34].

EXPDTA THEORETICAL MODEL

AUTHOR P.BHATTACHARYA,T.GANESHAN

REVDAT 1 31-OCT-06 2E0E 0

JRNL AUTH P.BHATTACHARYA,T.GANESHAN JRNL TITL 3D STRUCTURE OF D AMINO ACID OXIDASE (DAO) FAMILY JRNL TITL 2 PROTEIN [PHOTOBACTERIUM SP. SKA34] JRNL REF JOURNAL NOT DECIDED YET V. 0 0 2006

REMARK 1

REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.

REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NULL REMARK 3 AUTHORS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: A 3D MODEL OF D AMINO ACID OXIDASE REMARK 3 (DAO) FAMILY PROTEIN [PHOTOBACTERIUM SP. SKA34] HAS BEEN BUILT REMARK 3 USING THE 3D STRUCTURE OF 1C0P(PDB ID) CHAIN 'A' AS TEMPLATE REMARK 3 WITH ESYPRED3D PROGRAM(WHICH USED MODELLER PROGRAM). THIS REMARK 3 TEMPLATE SHARES 16.6% IDENTITIES WITH D AMINO ACID OXIDASE REMARK 3 (DAO) FAMILY PROTEIN [PHOTOBACTERIUM SP. SKA34] SEQUENCE REMARK 3 (USING THE ALIGN PROGRAM. THE TEMPLATE WAS CHOSEN FROM PSI- REMARK 3 BLAST LINKED WITH SEVERAL PROTEIN DATABASES(PDB,SWISS-PROT, REMARK 3 IPI, ETC).THE MODEL WAS VERIFIED WITH WHATIF, VERIFY 3D, REMARK 3 GROMOS, ANOLEA, PROCHECK ETC PROGRAMS, AND VIEWED WITH REMARK 3 DEEPVIEW(PDB VIEWER), RASMOL AND VMD 1.84 PROGRAMS.

REMARK 4 REMARK 4 2E0E COMPLIES WITH FORMAT V. 2.3, 09-JULY-1998

REMARK 100 REMARK 100 THIS ENTRY WAS DEPOSITED AT OSAKA ON 06-OCT-2006. REMARK 100 THE RCSB ID CODE IS RCSB026068.

REMARK 220 REMARK 220 EXPERIMENTAL DETAILS REMARK 220 EXPERIMENT TYPE : THEORETICAL MODELLING REMARK 220 REMARK 220 REMARK: PROTEIN SEQUENCE ID ZP_01162949 372 AA REMARK 220 LINEAR BCT 01-MAR-2006 DEFINITION D AMINO ACID OXIDASE (DAO) REMARK 220 FAMILY PROTEIN [PHOTOBACTERIUM SP. SKA34]. ACCESSION ZP_ REMARK 220 01162949 VERSION ZP_01162949.1 GI:89076651 DBSOURCE REFSEQ: REMARK 220 ACCESSION NZ_AAOU01000064.1 KEYWORDS . SOURCE PHOTOBACTERIUM REMARK 220 SP. SKA34 ORGANISM PHOTOBACTERIUM SP. SKA34 BACTERIA; REMARK 220 PROTEOBACTERIA; GAMMAPROTEOBACTERIA; VIBRIONALES; REMARK 220 VIBRIONACEAE; PHOTOBACTERIUM. REFERENCE 1 (RESIDUES 1 TO 372) REMARK 220 AUTHORS HAGSTROM,A.J., FERRIERA,S., JOHNSON,J., KRAVITZ,S., REMARK 220 HALPERN,A., REMINGTON,K., BEESON,K., TRAN,B., ROGERS,Y.-H., REMARK 220 FRIEDMAN,R. AND VENTER,J.C. TITLE DIRECT SUBMISSION JOURNAL REMARK 220 SUBMITTED (28-FEB-2006) J CRAIG VENTER INSTITUTE, 9704 MEDICAL REMARK 220 CENTER DRIVE, ROCKVILLE, MD 20850, USA COMMENT PREDICTED REMARK 220 REFSEQ: THE MRNA RECORD IS SUPPORTED BY EXPERIMENTAL EVIDENCE; REMARK 220 HOWEVER, THE CODING SEQUENCE IS PREDICTED. THE REFERENCE REMARK 220 SEQUENCE WAS DERIVED FROM EAR53302. ANNOTATION WAS ADDED BY REMARK 220 THE NCBI PROKARYOTIC GENOMES AUTOMATIC ANNOTATION PIPELINE REMARK 220 GROUP. INFORMATION ABOUT THE PIPELINE CAN BE FOUND HERE: HTTP: REMARK 220 //WWW.NCBI.NLM.NIH.GOV/GENOMES/STATIC/PIPELINE.HTML. PLEASE BE REMARK 220 AWARE THAT THE ANNOTATION IS DONE AUTOMATICALLY WITH LITTLE OR REMARK 220 NO MANUAL CURATION. METHOD: CONCEPTUAL TRANSLATION. THIS REMARK 220 THEORETICAL MODEL ENTRY WAS NOT ANNOTATED AND NOT VALIDATED BY REMARK 220 THE WWPDB STAFF AND THEREFORE MAY NOT CONFORM TO THE PDB REMARK 220 FORMAT.

REMARK 225 REMARK 225 THEORETICAL MODEL REMARK 225 THE COORDINATES IN THIS ENTRY REPRESENT A MODEL STRUCTURE. REMARK 225 PROTEIN DATA BANK CONVENTIONS REQUIRE THAT CRYST1 AND REMARK 225 SCALE RECORDS BE INCLUDED, BUT THE VALUES ON THESE REMARK 225 RECORDS ARE MEANINGLESS.

REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 VAL 230 REMARK 465 PRO 231 REMARK 465 ASP 232 REMARK 465 GLU 233 REMARK 465 LEU 234 REMARK 465 LYS 235 REMARK 465 LYS 236 REMARK 465 VAL 237 REMARK 465 GLY 238 REMARK 465 ILE 239 REMARK 465 THR 240 REMARK 465 VAL 241 REMARK 465 MET 242 REMARK 465 CYS 243 REMARK 465 GLY 244 REMARK 465 PRO 245 REMARK 465 PHE 246 REMARK 465 PHE 247 REMARK 465 SER 248 REMARK 465 ILE 249 REMARK 465 MET 250 REMARK 465 PRO 251 REMARK 465 PHE 252 REMARK 465 PRO 253 REMARK 465 HIS 348 REMARK 465 CYS 349 REMARK 465 VAL 350 REMARK 465 MET 351 REMARK 465 GLY 352 REMARK 465 GLY 353 REMARK 465 LYS 354 REMARK 465 ILE 355 REMARK 465 ASP 356 REMARK 465 ASN 357 REMARK 465 VAL 358 REMARK 465 TYR 359 REMARK 465 ASP 360 REMARK 465 VAL 361 REMARK 465 ILE 362 REMARK 465 GLN 363 REMARK 465 THR 364 REMARK 465 ILE 365 REMARK 465 ASN 366 REMARK 465 GLU 367 REMARK 465 LEU 368 REMARK 465 GLY 369 REMARK 465 LEU 370 REMARK 465 ASP 371 REMARK 465 LYS 372

REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS(M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP 229 O REMARK 470 LEU 347 O

REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 0 RELATED DB: BMCD REMARK 900 0 REMARK 900 RELATED ID: 0 RELATED DB: BMRB REMARK 900 0 REMARK 900 RELATED ID: 0 RELATED DB: EMDB REMARK 900 0 REMARK 900 RELATED ID: 0 RELATED DB: NDB REMARK 900 0 REMARK 900 RELATED ID: 0 RELATED DB: PDB REMARK 900 0 REMARK 900 RELATED ID: 0 RELATED DB: PDB REMARK 900 0

SEQRES 1 372 MET ASN ASN ASN VAL ASP ILE THR ILE ILE GLY GLY GLY SEQRES 2 372 PHE PHE GLY LEU TYR LEU ALA GLU TYR TYR ALA LEU LEU SEQRES 3 372 ASN LYS LYS VAL LEU VAL ILE GLU LYS GLU ASN ASP ALA SEQRES 4 372 MET GLN ARG ALA SER TYR ILE ASN GLN ALA ARG VAL HIS SEQRES 5 372 ASN GLY TYR HIS TYR PRO ARG SER VAL LEU THR ALA LEU SEQRES 6 372 ARG SER ARG ILE SER PHE PRO ARG PHE VAL ASP GLU PHE SEQRES 7 372 GLU SER CYS ILE ASP SER GLY PHE ASP LYS TYR TYR MET SEQRES 8 372 ILE SER ASN ARG LEU GLY LYS VAL THR PRO ASN GLN PHE SEQRES 9 372 GLU LYS PHE CYS ASP ARG ILE GLY ALA SER HIS GLU PRO SEQRES 10 372 ALA SER SER ALA ILE HIS GLN LEU VAL LYS PRO ASN MET SEQRES 11 372 ILE ASP GLY ILE PHE LYS VAL LYS GLU PHE ALA PHE ASN SEQRES 12 372 SER VAL LEU LEU LYS GLU THR MET LEU ASN ARG LEU GLN SEQRES 13 372 ASN SER ASN VAL LYS ILE LEU PHE ASN HIS GLU VAL SER SEQRES 14 372 ARG ILE LYS LYS ILE ASN SER SER LEU GLU LEU THR VAL SEQRES 15 372 ASN SER GLY ALA GLU GLU GLN LYS PHE THR SER LYS GLN SEQRES 16 372 VAL PHE ASN CYS THR TYR SER LEU LEU ASN SER VAL LEU SEQRES 17 372 SER GLU SER SER LEU GLU LEU ILE PRO LEU ARG HIS GLU SEQRES 18 372 MET THR GLU MET CYS ILE VAL ASP VAL PRO ASP GLU LEU SEQRES 19 372 LYS LYS VAL GLY ILE THR VAL MET CYS GLY PRO PHE PHE SEQRES 20 372 SER ILE MET PRO PHE PRO SER LYS GLN ALA HIS SER PHE SEQRES 21 372 SER HIS VAL ARG TYR THR PRO HIS TYR GLU TRP ASP ASP SEQRES 22 372 ASN ASN ASP ASN THR TYR LEU ASN ALA HIS LYS LEU ALA SEQRES 23 372 ARG GLU ASN GLN ARG ARG THR ALA PHE LYS LYS MET GLN SEQRES 24 372 LEU ASP ALA GLN ARG TYR ILE PRO MET LEU GLU ASN ILE SEQRES 25 372 LYS TYR LYS GLU SER LEU TRP GLU VAL LYS THR ILE LEU SEQRES 26 372 PRO ARG SER GLY THR ASP ASP SER ARG PRO ILE LEU PHE SEQRES 27 372 LYS ALA ASN TYR GLY LEU PRO GLY LEU HIS CYS VAL MET SEQRES 28 372 GLY GLY LYS ILE ASP ASN VAL TYR ASP VAL ILE GLN THR SEQRES 29 372 ILE ASN GLU LEU GLY LEU ASP LYS

HELIX 1 1 GLY 13 LEU 26 1 14 HELIX 2 2 LEU 65 GLU 79 1 15 HELIX 3 3 ASN 143 GLN 156 1 14 HELIX 4 4 SER 202 VAL 207 1 6 HELIX 5 5 PHE 295 ASP 301 1 7

SHEET 1 A 4 LYS 161 PHE 164 0 SHEET 2 A 4 LYS 29 GLU 34 1 N VAL 32 O LYS 161 SHEET 3 A 4 ASP 6 ILE 10 1 N ILE 9 O LEU 31 SHEET 4 A 4 VAL 196 ASN 198 1 O PHE 197 N ILE 10 SHEET 1 B 4 ALA 118 ILE 122 0 SHEET 2 B 4 GLY 133 ALA 141 -1 O LYS 136 N ALA 121 SHEET 3 B 4 TYR 89 THR 100 -1 N MET 91 O GLU 139 SHEET 4 B 4 LYS 255 GLN 256 1 O LYS 255 N VAL 99 SHEET 1 C 2 ILE 216 HIS 220 0 SHEET 2 C 2 GLU 320 ILE 324 -1 O ILE 324 N ILE 216

CISPEP 1 GLY 54 TYR 55 0 -13.37

CRYST1 1000.000 1000.000 1000.000 90.00 90.00 90.00 P 1 1

ORIGX1 1.000000 0.000000 0.000000 0.00000

ORIGX2 0.000000 1.000000 0.000000 0.00000

ORIGX3 0.000000 0.000000 1.000000 0.00000

SCALE1 0.001000 0.000000 0.000000 0.00000

SCALE2 0.000000 0.001000 0.000000 0.00000

SCALE3 0.000000 0.000000 0.001000 0.00000