2DZH - Header Asymmetric Unit

HEADER SWISS-MODEL SERVER (HTTP://SWISSMODEL.EX28-SEP-06 2DZH

TITLE D-AMINO ACID OXIDASE [RUBROBACTER XYLANOPHILUS DSM 9941]

COMPND MOL_ID: 1; COMPND 2 MOLECULE: D-AMINO ACID OXIDASE [RUBROBACTER XYLANOPHILUS COMPND 3 DSM 9941]; COMPND 4 CHAIN: NULL; COMPND 5 FRAGMENT: D-AMINO ACID OXIDASE [RUBROBACTER XYLANOPHILUS COMPND 6 DSM 9941].; COMPND 7 EC: 1.4.3.3.; COMPND 8 MUTATION: YES

SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: [RUBROBACTER XYLANOPHILUS DSM 9941]; SOURCE 3 STRAIN: [RUBROBACTER XYLANOPHILUS DSM 9941]; SOURCE 4 OTHER_DETAILS: D-AMINO ACID OXIDASE [RUBROBACTER SOURCE 5 XYLANOPHILUS DSM 9941].

KEYWDS D-AMINO ACID OXIDASE

EXPDTA THEORETICAL MODEL

AUTHOR P.BHATTACHARYA,T.GANESHAN

REVDAT 1 24-OCT-06 2DZH 0

JRNL AUTH P.BHATTACHARYA,T.GANESHAN JRNL TITL D-AMINO ACID OXIDASE [RUBROBACTER XYLANOPHILUS DSM JRNL TITL 2 9941] USING SWISS_MODEL: AN AUTOMATED PROTEIN JRNL TITL 3 HOMOLOGY-MODELING SERVER JRNL REF JOURNAL NOT DECIDED YET V. 0 0 2006 JRNL REFN ASTM NARHAD UK ISSN 0305-1048

REMARK 1

REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.

REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NULL REMARK 3 AUTHORS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: A 3D MODEL OF D-AMINO ACID OXIDASE REMARK 3 [RUBROBACTER XYLANOPHILUS DSM 9941]PROTEIN HAS BEEN BUILT REMARK 3 USING THE 3D STRUCTURE 1AN9 CHAIN 'A' AS TEMPLATE USING SWISS- REMARK 3 AUTOMATED MODELLING PROGRAM.THIS TEMPLATE SHARES >95% REMARK 3 IDENTITIES WITH D-AMINO ACID OXIDASE [RUBROBACTER XYLANOPHILUS REMARK 3 DSM 9941] SEQUENCE (USING THE ALIGN PROGRAM). THE MODEL WAS REMARK 3 TESTED WITH PROCHECK, WHATIF, ANOLEA, VERIFY 3D, ETC PROGRAMS REMARK 3 AND VIEWED WITH RASMOL, VMD 1.84 AND DEEP VIEW(PDB VIEWER).

REMARK 4 REMARK 4 2DZH COMPLIES WITH FORMAT V. 2.3, 09-JULY-1998

REMARK 100 REMARK 100 THIS ENTRY WAS DEPOSITED AT OSAKA ON 28-SEP-2006. REMARK 100 THE RCSB ID CODE IS RCSB026035.

REMARK 220 REMARK 220 EXPERIMENTAL DETAILS REMARK 220 EXPERIMENT TYPE : THEORETICAL MODELLING REMARK 220 REMARK 220 REMARK: PROTEIN SEQUENCE ID YP_643312 326 AA REMARK 220 LINEAR BCT 12-JUN-2006 DEFINITION D-AMINO ACID OXIDASE REMARK 220 [RUBROBACTER XYLANOPHILUS DSM 9941]. ACCESSION YP_643312 REMARK 220 VERSION YP_643312.1 GI:108803375 DBSOURCE REFSEQ: REMARK 220 ACCESSION NC_008148.1 KEYWORDS . SOURCE RUBROBACTER REMARK 220 XYLANOPHILUS DSM 9941 ORGANISM RUBROBACTER XYLANOPHILUS REMARK 220 DSM 9941 BACTERIA; ACTINOBACTERIA; RUBROBACTERIDAE; REMARK 220 RUBROBACTERALES; RUBROBACTERINEAE; RUBROBACTERACEAE; REMARK 220 RUBROBACTER. REFERENCE 1 (RESIDUES 1 TO 326) AUTHORS REMARK 220 COPELAND,A., LUCAS,S., LAPIDUS,A., BARRY,K., DETTER, REMARK 220 J.C., GLAVINA DEL RIO,T., HAMMON,N., ISRANI,S., DALIN, REMARK 220 E., TICE,H., PITLUCK,S., MUNK,A.C., BRETTIN,T., BRUCE, REMARK 220 D., HAN,C., TAPIA,R., GILNA,P., SCHMUTZ,J., LARIMER,F., REMARK 220 LAND,M., HAUSER,L., KYRPIDES,N., LYKIDIS,A., DA COSTA, REMARK 220 M.S., RAINEY,F.A., EMPADINHAS,N., JOLIVET,E., BATTISTA, REMARK 220 J.R. AND RICHARDSON,P. CONSRTM US DOE JOINT GENOME REMARK 220 INSTITUTE TITLE COMPLETE SEQUENCE OF RUBROBACTER REMARK 220 XYLANOPHILUS DSM 9941 JOURNAL UNPUBLISHED REFERENCE 2 REMARK 220 (RESIDUES 1 TO 326) CONSRTM NCBI GENOME PROJECT TITLE REMARK 220 DIRECT SUBMISSION JOURNAL SUBMITTED (12-JUN-2006) REMARK 220 NATIONAL CENTER FOR BIOTECHNOLOGY INFORMATION, NIH, REMARK 220 BETHESDA, MD 20894, USA REFERENCE 3 (RESIDUES 1 TO 326) REMARK 220 AUTHORS COPELAND,A., LUCAS,S., LAPIDUS,A., BARRY,K., REMARK 220 DETTER,J.C., GLAVINA DEL RIO,T., HAMMON,N., ISRANI,S., REMARK 220 DALIN,E., TICE,H., PITLUCK,S., MUNK,A.C., BRETTIN,T., REMARK 220 BRUCE,D., HAN,C., TAPIA,R., GILNA,P., SCHMUTZ,J., REMARK 220 LARIMER,F., LAND,M., HAUSER,L., KYRPIDES,N., LYKIDIS,A., REMARK 220 DA COSTA,M.S., RAINEY,F.A., EMPADINHAS,N., JOLIVET,E., REMARK 220 BATTISTA,J.R. AND RICHARDSON,P. CONSRTM US DOE JOINT REMARK 220 GENOME INSTITUTE TITLE DIRECT SUBMISSION JOURNAL REMARK 220 SUBMITTED (07-JUN-2006) US DOE JOINT GENOME INSTITUTE, REMARK 220 2800 MITCHELL DRIVE B100, WALNUT CREEK, CA 94598-1698, REMARK 220 USA COMMENT PROVISIONAL REFSEQ: THIS RECORD HAS NOT YET REMARK 220 BEEN SUBJECT TO FINAL NCBI REVIEW. THE REFERENCE REMARK 220 SEQUENCE WAS DERIVED FROM ABG03500. METHOD: CONCEPTUAL REMARK 220 TRANSLATION. THIS THEORETICAL MODEL ENTRY WAS NOT REMARK 220 ANNOTATED AND NOT VALIDATED BY THE WWPDB STAFF AND REMARK 220 THEREFORE MAY NOT CONFORM TO THE PDB FORMAT.

REMARK 225 REMARK 225 THEORETICAL MODEL REMARK 225 THE COORDINATES IN THIS ENTRY REPRESENT A MODEL STRUCTURE. REMARK 225 PROTEIN DATA BANK CONVENTIONS REQUIRE THAT CRYST1 AND REMARK 225 SCALE RECORDS BE INCLUDED, BUT THE VALUES ON THESE REMARK 225 RECORDS ARE MEANINGLESS.

REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET 1 REMARK 465 CYS 2 REMARK 465 GLY 3 REMARK 465 MET 4 REMARK 465 ARG 5 REMARK 465 GLY 6 REMARK 465 ARG 7 REMARK 465 VAL 8 REMARK 465 VAL 9 REMARK 465 ALA 10 REMARK 465 LEU 325 REMARK 465 SER 326

REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 0 RELATED DB: BMCD REMARK 900 0 REMARK 900 RELATED ID: 0 RELATED DB: BMRB REMARK 900 0 REMARK 900 RELATED ID: 0 RELATED DB: EMDB REMARK 900 0 REMARK 900 RELATED ID: 0 RELATED DB: NDB REMARK 900 0 REMARK 900 RELATED ID: 0 RELATED DB: PDB REMARK 900 0 REMARK 900 RELATED ID: 0 RELATED DB: TARGETDB REMARK 900 0

REMARK 999 REMARK 999 SEQUENCE REMARK 999 SPAC SWS SPAC 1 - 10 NOT IN ATOMS LIST REMARK 999 SPAC SWS SPAC 326 - 326 NOT IN ATOMS LIST

SEQRES 1 326 MET CYS GLY MET ARG GLY ARG VAL VAL ALA ARG ALA VAL SEQRES 2 326 VAL VAL GLY CYS GLY VAL ALA GLY LEU SER ALA ALA ILE SEQRES 3 326 ALA LEU ARG GLU ARG GLY PHE GLY VAL ARG VAL VAL ALA SEQRES 4 326 ARG GLU PRO PRO GLU ARG THR THR SER ALA VAL ALA ALA SEQRES 5 326 ALA VAL TRP TYR PRO TYR ARG ALA TYR PRO GLU GLU ARG SEQRES 6 326 VAL LEU SER TRP GLY ALA ARG THR PHE GLU VAL PHE ARG SEQRES 7 326 GLY LEU ALA ALA ASP PRO ARG THR GLY VAL ARG LEU GLY SEQRES 8 326 GLU GLY VAL GLU LEU LEU ARG ARG SER ALA PRO GLY GLU SEQRES 9 326 PRO TRP TRP ARG GLU ALA VAL SER GLY PHE ARG ARG CYS SEQRES 10 326 ARG GLU GLU GLU LEU PRO PRO GLY CYS ARG GLY GLY TYR SEQRES 11 326 ARG PHE VAL ALA PRO VAL ALA GLU MET PRO ALA TYR LEU SEQRES 12 326 ALA TYR LEU LEU ASP ARG LEU ARG GLY ALA GLY GLY THR SEQRES 13 326 LEU GLU LEU ARG GLU VAL SER SER LEU GLU GLU ALA GLY SEQRES 14 326 GLU GLY ALA ASP VAL VAL VAL ASN CYS SER GLY VAL TRP SEQRES 15 326 ALA ARG GLU LEU ALA ARG ASP PRO SER VAL PHE PRO ILE SEQRES 16 326 ARG GLY GLN ILE LEU ARG VAL ALA ASN PRO GLY LEU GLU SEQRES 17 326 ARG PHE VAL LEU ASP GLU GLU ASN PRO ALA GLY LEU THR SEQRES 18 326 TYR ILE VAL PRO ARG SER GLY ASP CYS VAL LEU GLY GLY SEQRES 19 326 THR ALA GLU GLU GLY ARG TRP SER THR GLU PRO ASP PRO SEQRES 20 326 ALA THR ALA GLU ALA ILE LEU ARG ARG CYS SER ALA LEU SEQRES 21 326 GLU PRO ARG LEU ARG GLY ALA ARG VAL LEU GLU HIS ARG SEQRES 22 326 ALA GLY LEU ARG PRO GLY ARG PRO GLU VAL ARG LEU GLU SEQRES 23 326 LEU GLU GLU LEU PRO GLY GLY THR PRO CYS VAL HIS ASN SEQRES 24 326 TYR GLY HIS GLY GLY SER GLY VAL THR LEU SER TRP GLY SEQRES 25 326 CYS ALA GLU GLU ALA ALA ALA LEU ALA GLY ALA ALA LEU SEQRES 26 326 SER

HELIX 1 1 GLY 18 GLY 32 1 15 HELIX 2 2 PRO 42 ARG 45 5 4 HELIX 3 3 THR 46 ALA 51 1 6 HELIX 4 4 GLU 64 GLY 79 1 16 HELIX 5 5 GLU 138 GLY 154 1 17 HELIX 6 6 SER 164 GLY 169 1 6 HELIX 7 7 SER 179 VAL 181 5 3 HELIX 8 8 TRP 182 ALA 187 1 6 HELIX 9 9 ASP 246 GLU 261 1 16 HELIX 10 10 PRO 262 ALA 267 5 6 HELIX 11 11 SER 305 ALA 324 1 20

SHEET 1 A 6 THR 156 LEU 159 0 SHEET 2 A 6 ARG 36 ALA 39 1 N VAL 37 O GLU 158 SHEET 3 A 6 ALA 12 VAL 15 1 N VAL 14 O ARG 36 SHEET 4 A 6 VAL 174 ASN 177 1 O VAL 176 N VAL 15 SHEET 5 A 6 THR 294 TYR 300 1 O VAL 297 N ASN 177 SHEET 6 A 6 ARG 284 LEU 290 -1 N GLU 288 O CYS 296 SHEET 1 B 8 SER 112 ARG 116 0 SHEET 2 B 8 GLY 128 ALA 137 -1 O VAL 133 N SER 112 SHEET 3 B 8 VAL 88 LEU 97 -1 N GLY 91 O ALA 134 SHEET 4 B 8 PHE 210 GLU 214 1 O LEU 212 N VAL 94 SHEET 5 B 8 TYR 222 PRO 225 -1 O ILE 223 N VAL 211 SHEET 6 B 8 CYS 230 GLY 233 -1 O VAL 231 N VAL 224 SHEET 7 B 8 PHE 193 ALA 203 -1 N LEU 200 O LEU 232 SHEET 8 B 8 GLU 237 GLU 238 -1 O GLU 237 N ARG 196 SHEET 1 C 8 SER 112 ARG 116 0 SHEET 2 C 8 GLY 128 ALA 137 -1 O VAL 133 N SER 112 SHEET 3 C 8 VAL 88 LEU 97 -1 N GLY 91 O ALA 134 SHEET 4 C 8 PHE 210 GLU 214 1 O LEU 212 N VAL 94 SHEET 5 C 8 TYR 222 PRO 225 -1 O ILE 223 N VAL 211 SHEET 6 C 8 CYS 230 GLY 233 -1 O VAL 231 N VAL 224 SHEET 7 C 8 PHE 193 ALA 203 -1 N LEU 200 O LEU 232 SHEET 8 C 8 ARG 268 GLY 279 -1 O LEU 270 N ARG 201

CISPEP 1 GLY 34 VAL 35 0 -6.52

CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1

ORIGX1 1.000000 0.000000 0.000000 0.00000

ORIGX2 0.000000 1.000000 0.000000 0.00000

ORIGX3 0.000000 0.000000 1.000000 0.00000

SCALE1 1.000000 0.000000 0.000000 0.00000

SCALE2 0.000000 1.000000 0.000000 0.00000

SCALE3 0.000000 0.000000 1.000000 0.00000