10 20 30 40 50 60 70 80 2DQ8 - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER HYDROLASE 23-MAY-06 2DQ8
TITLE PROTEIN MODEL FOR NEURAMINIDASE
COMPND MOL_ID: 1; COMPND 2 MOLECULE: NEURAMINIDASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 82-367; COMPND 5 EC: 3.2.1.18
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: INFLUENZA A VIRUS; SOURCE 3 ORGANISM_COMMON: VIRUS; SOURCE 4 OTHER_DETAILS: PHEASANT
KEYWDS CPH
EXPDTA THEORETICAL MODEL
AUTHOR S.PRADEEP,M.SONIASAREE
REVDAT 1 13-JUN-06 2DQ8 0
JRNL AUTH S.PRADEEP,M.SONIASAREE JRNL TITL PROTEIN MODEL FOR NEURAMINIDASE JRNL REF TO BE PUBLISHED JRNL REFN
REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH M.C.PEITSCH REMARK 1 TITL PROMOD AND SWISS-MODEL: INTERNET-BASED TOOLS FOR REMARK 1 TITL 2 AUTOMATED COMPARATIVE PROTEIN MODELLING REMARK 1 REF BIOCHEM.SOC.TRANS. V. 24 274 1996 REMARK 1 REFN ASTM BCSTB5 UK ISSN 0300-5127 REMARK 1 REFERENCE 2 REMARK 1 AUTH N.GUEX,M.C.PEITSCH REMARK 1 TITL SWISS-MODEL AND THE SWISS-PDBVIEWER: AN REMARK 1 TITL 2 ENVIRONMENT FOR COMPARATIVE PROTEIN MODELING REMARK 1 REF ELECTROPHORESIS V. 18 2714 1997 REMARK 1 REFN GE ISSN 0173-0835 REMARK 1 REFERENCE 3 REMARK 1 AUTH T.SCHWEDE,J.KOPP,N.GUEX,M.C.PEITSCH REMARK 1 TITL SWISS-MODEL: AN AUTOMATED PROTEIN REMARK 1 TITL 2 HOMOLOGY-MODELING SERVER REMARK 1 REF NUCLEIC ACIDS RES. V. 31 3381 2003 REMARK 1 REFN ASTM NARHAD UK ISSN 0305-1048
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NULL REMARK 3 AUTHORS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HOMOLOGY MODELLING
REMARK 4 REMARK 4 2DQ8 COMPLIES WITH FORMAT V. 2.3, 09-JULY-1998
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 26-MAY-2006. REMARK 100 THE RCSB ID CODE IS RCSB025713.
REMARK 220 REMARK 220 EXPERIMENTAL DETAILS REMARK 220 EXPERIMENT TYPE : THEORETICAL MODELLING REMARK 220 REMARK 220 REMARK: NULL
REMARK 225 REMARK 225 THEORETICAL MODEL REMARK 225 THE COORDINATES IN THIS ENTRY REPRESENT A MODEL STRUCTURE. REMARK 225 PROTEIN DATA BANK CONVENTIONS REQUIRE THAT CRYST1 AND REMARK 225 SCALE RECORDS BE INCLUDED, BUT THE VALUES ON THESE REMARK 225 RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),F6.3) REMARK 500 REMARK 500 EXPECTED VALUES: ENGH AND HUBER, 1991 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 PHE A 239 CE1 PHE A 239 CZ -0.203 REMARK 500 ILE A 255 CA ILE A 255 C 0.096 REMARK 500 ILE A 255 C ILE A 255 O -0.188 REMARK 500 PHE A 306 CD1 PHE A 306 CE1 0.110 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES: ENGH AND HUBER, 1991 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 118 C - N - CA ANGL. DEV. = 16.4 DEGREES REMARK 500 ILE A 255 CA - CB - CG2 ANGL. DEV. =-40.6 DEGREES REMARK 500 ILE A 255 CA - C - N ANGL. DEV. =-16.8 DEGREES REMARK 500 ASP A 324 N - CA - CB ANGL. DEV. =-18.2 DEGREES REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 357 -117.65 69.35
DBREF 2DQ8 A 82 367 UNP Q807U4 Q807U4_9INFA 82 367
SEQRES 1 A 286 SER VAL THR LEU ALA GLY ASN SER SER LEU CYS PRO ILE SEQRES 2 A 286 SER GLY TRP ALA VAL TYR SER LYS ASP ASN GLY ILE ARG SEQRES 3 A 286 ILE GLY SER LYS GLY ASP VAL PHE VAL ILE ARG GLU PRO SEQRES 4 A 286 PHE ILE SER CYS SER HIS LEU GLU CYS ARG THR PHE PHE SEQRES 5 A 286 LEU THR GLN GLY ALA LEU LEU ASN ASP LYS HIS SER ASN SEQRES 6 A 286 GLY THR VAL LYS ASP ARG SER PRO TYR ARG THR LEU MET SEQRES 7 A 286 SER CYS PRO VAL GLY GLU ALA PRO SER PRO TYR ASN SER SEQRES 8 A 286 ARG PHE GLU SER VAL ALA TRP SER ALA SER ALA CYS HIS SEQRES 9 A 286 ASP GLY THR SER TRP LEU THR ILE GLY ILE SER GLY PRO SEQRES 10 A 286 ASP ASN GLY ALA VAL ALA VAL LEU LYS TYR ASN GLY ILE SEQRES 11 A 286 ILE THR ASP THR ILE LYS SER TRP ARG ASN ASN ILE LEU SEQRES 12 A 286 ARG THR GLN GLU SER GLU CYS ALA CYS VAL ASN GLY SER SEQRES 13 A 286 CYS PHE THR VAL MET THR ASP GLY PRO SER ASN GLY GLN SEQRES 14 A 286 ALA SER TYR LYS ILE PHE LYS ILE GLU LYS GLY LYS VAL SEQRES 15 A 286 VAL LYS SER VAL GLU LEU ASN ALA PRO ASN TYR HIS TYR SEQRES 16 A 286 GLU GLU CYS SER CYS TYR PRO ASP ALA GLY GLU ILE THR SEQRES 17 A 286 CYS VAL CYS ARG ASP ASN TRP HIS GLY SER ASN ARG PRO SEQRES 18 A 286 TRP VAL SER PHE ASN GLN ASN LEU GLU TYR GLN ILE GLY SEQRES 19 A 286 TYR ILE CYS SER GLY VAL PHE GLY ASP ASN PRO ARG PRO SEQRES 20 A 286 ASN ASP GLY THR GLY SER CYS GLY PRO VAL SER PRO ASN SEQRES 21 A 286 GLY ALA TYR GLY ILE LYS GLY PHE SER PHE LYS TYR GLY SEQRES 22 A 286 ASN GLY VAL TRP ILE GLY ARG THR LYS SER THR ASN SER
HELIX 1 1 ASN A 104 SER A 110 1 7 HELIX 2 2 ASP A 142 ASN A 146 5 5
SHEET 1 A 4 PHE A 121 SER A 125 0 SHEET 2 A 4 GLU A 128 LEU A 134 -1 O GLU A 128 N SER A 125 SHEET 3 A 4 THR A 157 PRO A 162 -1 O CYS A 161 N THR A 131 SHEET 4 A 4 ARG A 173 VAL A 177 -1 O GLU A 175 N LEU A 158 SHEET 1 B 4 ALA A 181 HIS A 185 0 SHEET 2 B 4 TRP A 190 SER A 196 -1 O LEU A 191 N CYS A 184 SHEET 3 B 4 VAL A 203 TYR A 208 -1 O LYS A 207 N THR A 192 SHEET 4 B 4 ILE A 212 LYS A 217 -1 O ASP A 214 N LEU A 206 SHEET 1 C 4 ALA A 232 VAL A 234 0 SHEET 2 C 4 SER A 237 ASP A 244 -1 O SER A 237 N VAL A 234 SHEET 3 C 4 SER A 252 GLU A 259 -1 O SER A 252 N ASP A 244 SHEET 4 C 4 LYS A 262 LYS A 265 -1 O VAL A 264 N LYS A 257 SHEET 1 D 4 SER A 280 ASP A 284 0 SHEET 2 D 4 GLU A 287 VAL A 291 -1 O THR A 289 N TYR A 282 SHEET 3 D 4 PRO A 302 ASN A 307 -1 O PHE A 306 N ILE A 288 SHEET 4 D 4 TYR A 312 ILE A 317 -1 O TYR A 312 N ASN A 307 SHEET 1 E 2 LYS A 352 GLY A 354 0 SHEET 2 E 2 ARG A 361 LYS A 363 -1 O ARG A 361 N GLY A 354
SSBOND 1 CYS A 124 CYS A 129 SSBOND 2 CYS A 184 CYS A 231 SSBOND 3 CYS A 233 CYS A 238 SSBOND 4 CYS A 279 CYS A 292 SSBOND 5 CYS A 281 CYS A 290
CISPEP 1 PRO A 326 ARG A 327 0 -6.06
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000