10 20 30 40 50 60 70 80 2DOC - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER CELL ADHESION 28-APR-06 2DOC
TITLE SOLUTION STRUCTURE OF THE FIBRONECTIN TYPE-III DOMAIN OF TITLE 2 HUMAN NEURAL CELL ADHESION MOLECULE 2
COMPND MOL_ID: 1; COMPND 2 MOLECULE: NEURAL CELL ADHESION MOLECULE 2; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: FIBRONECTIN TYPE-III DOMAIN; COMPND 5 SYNONYM: N-CAM 2; COMPND 6 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: NCAM2; SOURCE 6 EXPRESSION_SYSTEM: CELL FREE SYNTHESIS; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: P050719-17; SOURCE 9 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS
KEYWDS CELL ADHESION, GLYCOPROTEIN, FN3 DOMAIN, STRUCTURAL KEYWDS 2 GENOMICS, NPPSFA, NATIONAL PROJECT ON PROTEIN STRUCTURAL KEYWDS 3 AND FUNCTIONAL ANALYSES, RIKEN STRUCTURAL KEYWDS 4 GENOMICS/PROTEOMICS INITIATIVE, RSGI
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR M.YONEYAMA,N.TOCHIO,S.KOSHIBA,M.INOUE,T.KIGAWA,S.YOKOYAMA, AUTHOR 2 RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI)
REVDAT 2 24-FEB-09 2DOC 1 VERSN REVDAT 1 28-OCT-06 2DOC 0
JRNL AUTH M.YONEYAMA,N.TOCHIO,S.KOSHIBA,M.INOUE,T.KIGAWA, JRNL AUTH 2 S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE FIBRONECTIN TYPE-III JRNL TITL 2 DOMAIN OF HUMAN NEURAL CELL ADHESION MOLECULE 2 JRNL REF TO BE PUBLISHED JRNL REFN
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 2.0.17 REMARK 3 AUTHORS : GUNTERT, P. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 2DOC COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 09-MAY-06. REMARK 100 THE RCSB ID CODE IS RCSB025650.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.14MM FIBRONECTIN TYPE-III REMARK 210 DOMAIN, U-15N, 13C; 20MM D- REMARK 210 TRIS HCL (PH 7.0); 100MM NACL; REMARK 210 1MM D-DTT; 0.02% NAN3; 90% REMARK 210 H2O, 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY, 3D_ REMARK 210 13C-SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR 3.5, NMRPIPE REMARK 210 20030801, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.9742, CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION, STRUCTURES REMARK 210 WITH THE LEAST RESTRAINT REMARK 210 VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 GLN A 8 49.33 -92.56 REMARK 500 1 ASP A 42 -18.59 -49.79 REMARK 500 1 HIS A 70 42.55 -100.65 REMARK 500 1 LYS A 104 114.60 -39.71 REMARK 500 1 VAL A 113 133.17 -34.60 REMARK 500 2 SER A 2 -59.94 -128.95 REMARK 500 2 ILE A 11 -35.63 -132.34 REMARK 500 2 VAL A 17 151.76 -44.52 REMARK 500 2 VAL A 24 135.09 -34.05 REMARK 500 2 ALA A 34 117.98 -160.05 REMARK 500 2 LYS A 40 152.03 -48.04 REMARK 500 2 ASP A 42 -33.24 -39.67 REMARK 500 2 VAL A 72 30.14 -92.75 REMARK 500 2 LYS A 104 108.71 -40.79 REMARK 500 2 ILE A 105 122.79 -36.88 REMARK 500 2 VAL A 113 116.22 -35.36 REMARK 500 3 GLN A 8 -26.84 -38.38 REMARK 500 3 GLU A 9 36.15 -83.87 REMARK 500 3 LEU A 12 -19.82 -48.89 REMARK 500 3 ASP A 16 -75.19 -133.08 REMARK 500 3 VAL A 24 107.16 -40.25 REMARK 500 3 SER A 43 75.60 -117.73 REMARK 500 3 ILE A 105 124.92 -38.80 REMARK 500 3 VAL A 113 132.74 -34.02 REMARK 500 4 GLU A 9 25.04 40.45 REMARK 500 4 VAL A 17 153.02 -37.05 REMARK 500 4 LYS A 40 152.51 -48.62 REMARK 500 4 GLN A 73 161.25 -40.00 REMARK 500 4 ILE A 105 123.35 -34.56 REMARK 500 4 VAL A 113 133.15 -33.93 REMARK 500 4 SER A 118 -54.88 -124.46 REMARK 500 5 GLN A 8 47.74 -87.87 REMARK 500 5 PRO A 21 -175.00 -69.84 REMARK 500 5 VAL A 24 115.92 -38.00 REMARK 500 5 VAL A 72 37.32 -88.71 REMARK 500 5 ASN A 80 53.55 74.12 REMARK 500 5 ILE A 105 119.63 -33.68 REMARK 500 5 VAL A 113 125.51 -35.18 REMARK 500 5 PRO A 116 1.00 -69.62 REMARK 500 6 SER A 2 57.53 -112.69 REMARK 500 6 SER A 3 41.98 34.44 REMARK 500 6 GLN A 8 48.55 39.32 REMARK 500 6 LEU A 12 -19.97 -48.41 REMARK 500 6 ASP A 16 -74.70 -111.55 REMARK 500 6 ASP A 42 -37.06 -37.74 REMARK 500 6 VAL A 72 31.47 -85.73 REMARK 500 6 THR A 110 173.84 -54.47 REMARK 500 6 VAL A 113 121.20 -36.19 REMARK 500 6 SER A 117 91.78 -54.69 REMARK 500 7 SER A 3 119.47 -165.17 REMARK 500 7 GLN A 8 56.41 -98.70 REMARK 500 7 ASP A 16 -74.16 -111.64 REMARK 500 7 SER A 43 75.28 -112.93 REMARK 500 7 VAL A 72 32.93 -87.76 REMARK 500 7 ILE A 105 119.50 -36.94 REMARK 500 7 THR A 110 170.32 -52.15 REMARK 500 7 VAL A 113 131.87 -33.87 REMARK 500 7 PRO A 116 1.68 -69.81 REMARK 500 8 ILE A 11 -38.07 -130.68 REMARK 500 8 VAL A 17 149.23 -33.99 REMARK 500 8 ALA A 34 118.29 -160.94 REMARK 500 8 LYS A 40 152.60 -42.87 REMARK 500 8 ASP A 42 34.70 -83.96 REMARK 500 8 SER A 43 105.10 -168.06 REMARK 500 8 VAL A 72 35.86 -86.41 REMARK 500 8 LYS A 104 126.98 -38.50 REMARK 500 8 VAL A 113 130.64 -34.24 REMARK 500 9 ILE A 11 -40.23 -133.23 REMARK 500 9 ASP A 16 -74.93 -106.38 REMARK 500 9 PRO A 21 -173.23 -69.71 REMARK 500 9 SER A 61 172.69 -58.62 REMARK 500 9 VAL A 72 39.57 -84.64 REMARK 500 9 ASN A 80 46.92 74.04 REMARK 500 9 ILE A 105 125.91 -36.06 REMARK 500 9 VAL A 113 128.35 -34.18 REMARK 500 9 SER A 117 108.84 -36.06 REMARK 500 10 SER A 5 97.89 -64.74 REMARK 500 10 ASP A 16 -75.14 -104.58 REMARK 500 10 HIS A 70 42.52 -109.42 REMARK 500 10 VAL A 72 31.74 -91.48 REMARK 500 10 LYS A 104 109.92 -41.15 REMARK 500 10 ILE A 105 125.59 -36.48 REMARK 500 10 PRO A 116 1.86 -69.80 REMARK 500 10 SER A 118 150.24 -41.43 REMARK 500 11 ILE A 11 -34.80 -132.12 REMARK 500 11 PRO A 21 -177.78 -69.76 REMARK 500 11 VAL A 24 106.20 -34.42 REMARK 500 11 SER A 61 172.31 -55.69 REMARK 500 11 GLN A 73 163.41 -45.70 REMARK 500 11 LYS A 104 115.46 -35.10 REMARK 500 11 THR A 110 170.79 -49.89 REMARK 500 11 VAL A 113 138.51 -38.13 REMARK 500 12 GLN A 8 -25.88 -39.00 REMARK 500 12 GLU A 9 35.79 -83.48 REMARK 500 12 ASP A 42 -35.05 -34.71 REMARK 500 12 GLN A 73 159.03 -38.81 REMARK 500 12 LYS A 104 113.45 -39.10 REMARK 500 12 VAL A 113 102.94 -35.18 REMARK 500 12 SER A 114 48.73 39.84 REMARK 500 13 SER A 5 78.43 -62.42 REMARK 500 13 GLN A 8 -26.20 -38.60 REMARK 500 13 GLU A 9 38.79 -82.06 REMARK 500 13 ASP A 16 -75.01 -103.04 REMARK 500 13 PRO A 21 -178.46 -69.78 REMARK 500 13 LYS A 57 149.63 -171.31 REMARK 500 13 HIS A 70 53.95 -94.07 REMARK 500 13 VAL A 72 31.37 -99.10 REMARK 500 13 ILE A 105 126.71 -36.21 REMARK 500 13 VAL A 113 117.08 -34.70 REMARK 500 14 SER A 5 153.37 -49.66 REMARK 500 14 TYR A 10 -37.89 -36.55 REMARK 500 14 ILE A 11 -33.76 -132.14 REMARK 500 14 SER A 69 30.55 -90.36 REMARK 500 14 HIS A 70 32.72 35.94 REMARK 500 14 LYS A 104 115.40 -37.08 REMARK 500 14 VAL A 113 135.10 -37.36 REMARK 500 14 SER A 117 99.53 -43.96 REMARK 500 15 GLU A 9 31.37 -85.37 REMARK 500 15 VAL A 17 152.94 -45.96 REMARK 500 15 LYS A 40 153.94 -39.06 REMARK 500 15 SER A 61 172.95 -52.18 REMARK 500 15 VAL A 72 34.53 -90.96 REMARK 500 15 VAL A 113 146.60 -37.96 REMARK 500 15 SER A 117 142.50 -35.12 REMARK 500 16 SER A 6 -70.52 -79.96 REMARK 500 16 ILE A 11 -39.25 -131.42 REMARK 500 16 VAL A 17 148.67 -36.67 REMARK 500 16 LYS A 40 152.72 -39.49 REMARK 500 16 ASP A 42 -35.00 -38.27 REMARK 500 16 VAL A 72 32.95 -97.31 REMARK 500 16 LYS A 104 115.27 -38.35 REMARK 500 16 VAL A 113 112.57 -34.59 REMARK 500 17 ILE A 11 -34.97 -130.08 REMARK 500 17 ASP A 16 -75.04 -107.10 REMARK 500 17 GLN A 73 166.61 -42.92 REMARK 500 17 ILE A 105 118.46 -34.87 REMARK 500 17 VAL A 113 121.01 -35.43 REMARK 500 18 SER A 6 99.51 -65.16 REMARK 500 18 ILE A 11 -39.62 -131.07 REMARK 500 18 VAL A 17 150.84 -44.81 REMARK 500 18 PRO A 21 -178.43 -69.79 REMARK 500 18 LYS A 40 150.19 -45.46 REMARK 500 18 HIS A 70 36.13 35.64 REMARK 500 18 ASP A 101 171.00 -56.21 REMARK 500 18 LYS A 104 106.13 -40.20 REMARK 500 18 ILE A 105 127.55 -35.86 REMARK 500 18 VAL A 113 137.60 -34.00 REMARK 500 18 PRO A 116 87.16 -69.71 REMARK 500 19 SER A 5 46.22 -82.56 REMARK 500 19 GLU A 9 25.50 47.04 REMARK 500 19 ASP A 16 -71.26 -107.78 REMARK 500 19 VAL A 24 115.00 -37.49 REMARK 500 19 HIS A 70 41.02 -96.33 REMARK 500 19 ASN A 80 52.38 74.05 REMARK 500 19 LYS A 104 111.70 -35.69 REMARK 500 19 THR A 110 171.48 -48.61 REMARK 500 19 VAL A 113 102.77 -31.01 REMARK 500 19 SER A 114 53.63 37.13 REMARK 500 20 GLN A 8 39.35 33.28 REMARK 500 20 GLU A 9 54.89 -105.87 REMARK 500 20 VAL A 24 128.99 -38.91 REMARK 500 20 ALA A 34 115.84 -163.14 REMARK 500 20 VAL A 113 133.68 -35.52 REMARK 500 REMARK 500 REMARK: NULL
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSK003001927.1 RELATED DB: TARGETDB
DBREF 2DOC A 8 113 UNP O15394 NCAM2_HUMAN 486 591
SEQADV 2DOC GLY A 1 UNP O15394 CLONING ARTIFACT SEQADV 2DOC SER A 2 UNP O15394 CLONING ARTIFACT SEQADV 2DOC SER A 3 UNP O15394 CLONING ARTIFACT SEQADV 2DOC GLY A 4 UNP O15394 CLONING ARTIFACT SEQADV 2DOC SER A 5 UNP O15394 CLONING ARTIFACT SEQADV 2DOC SER A 6 UNP O15394 CLONING ARTIFACT SEQADV 2DOC GLY A 7 UNP O15394 CLONING ARTIFACT SEQADV 2DOC SER A 114 UNP O15394 CLONING ARTIFACT SEQADV 2DOC GLY A 115 UNP O15394 CLONING ARTIFACT SEQADV 2DOC PRO A 116 UNP O15394 CLONING ARTIFACT SEQADV 2DOC SER A 117 UNP O15394 CLONING ARTIFACT SEQADV 2DOC SER A 118 UNP O15394 CLONING ARTIFACT SEQADV 2DOC GLY A 119 UNP O15394 CLONING ARTIFACT
SEQRES 1 A 119 GLY SER SER GLY SER SER GLY GLN GLU TYR ILE LEU ALA SEQRES 2 A 119 LEU ALA ASP VAL PRO SER SER PRO TYR GLY VAL LYS ILE SEQRES 3 A 119 ILE GLU LEU SER GLN THR THR ALA LYS VAL SER PHE ASN SEQRES 4 A 119 LYS PRO ASP SER HIS GLY GLY VAL PRO ILE HIS HIS TYR SEQRES 5 A 119 GLN VAL ASP VAL LYS GLU VAL ALA SER GLU ILE TRP LYS SEQRES 6 A 119 ILE VAL ARG SER HIS GLY VAL GLN THR MET VAL VAL LEU SEQRES 7 A 119 ASN ASN LEU GLU PRO ASN THR THR TYR GLU ILE ARG VAL SEQRES 8 A 119 ALA ALA VAL ASN GLY LYS GLY GLN GLY ASP TYR SER LYS SEQRES 9 A 119 ILE GLU ILE PHE GLN THR LEU PRO VAL SER GLY PRO SER SEQRES 10 A 119 SER GLY
SHEET 1 A 3 TYR A 22 ILE A 26 0 SHEET 2 A 3 ALA A 34 ASN A 39 -1 O ASN A 39 N TYR A 22 SHEET 3 A 3 MET A 75 LEU A 78 -1 O VAL A 76 N VAL A 36 SHEET 1 B 4 LYS A 65 ARG A 68 0 SHEET 2 B 4 HIS A 51 GLU A 58 -1 N VAL A 54 O VAL A 67 SHEET 3 B 4 THR A 86 ASN A 95 -1 O GLU A 88 N LYS A 57 SHEET 4 B 4 GLY A 98 TYR A 102 -1 O GLY A 98 N ASN A 95 SHEET 1 C 4 LYS A 65 ARG A 68 0 SHEET 2 C 4 HIS A 51 GLU A 58 -1 N VAL A 54 O VAL A 67 SHEET 3 C 4 THR A 86 ASN A 95 -1 O GLU A 88 N LYS A 57 SHEET 4 C 4 GLU A 106 GLN A 109 -1 O GLU A 106 N ILE A 89
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000