10 20 30 40 50 60 70 80 2DO4 - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER IMMUNE SYSTEM 27-APR-06 2DO4
TITLE SOLUTION STRUCTURE OF THE RNA BINDING DOMAIN OF SQUAMOUS TITLE 2 CELL CARCINOMA ANTIGEN RECOGNIZED BY T CELLS 3
COMPND MOL_ID: 1; COMPND 2 MOLECULE: SQUAMOUS CELL CARCINOMA ANTIGEN RECOGNIZED BY T- COMPND 3 CELLS 3; COMPND 4 CHAIN: A; COMPND 5 FRAGMENT: RNA RECOGNITION MOTIF; COMPND 6 SYNONYM: SART-3, HSART-3, TAT-INTERACTING PROTEIN OF 110 COMPND 7 KDA, TIP110; COMPND 8 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SART3; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P051121-11; SOURCE 8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS
KEYWDS RRM DOMAIM, RDB, STRUCTURAL GENOMICS, NPPSFA, NATIONAL KEYWDS 2 PROJECT ON PROTEIN STRUCTURAL AND FUNCTIONAL ANALYSES, KEYWDS 3 RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI, KEYWDS 4 IMMUNE SYSTEM
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR W.TANABE,S.SUZUKI,Y.MUTO,M.INOUE,T.KIGAWA,T.TERADA, AUTHOR 2 M.SHIROUZU,S.YOKOYAMA,RIKEN STRUCTURAL GENOMICS/PROTEOMICS AUTHOR 3 INITIATIVE (RSGI)
REVDAT 2 24-FEB-09 2DO4 1 VERSN REVDAT 1 17-APR-07 2DO4 0
JRNL AUTH S.SUZUKI,Y.MUTO,M.INOUE,T.KIGAWA,T.TERADA, JRNL AUTH 2 M.SHIROUZU,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE RNA BINDING DOMAIN OF JRNL TITL 2 SQUAMOUS CELL CARCINOMA ANTIGEN RECOGNIZED BY T JRNL TITL 3 CELLS 3 JRNL REF TO BE PUBLISHED JRNL REFN
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 2.0.17 REMARK 3 AUTHORS : GUNTERT, P. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 2DO4 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 11-MAY-06. REMARK 100 THE RCSB ID CODE IS RCSB025642.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.1MM 13C/15N-PROTEIN; 20MM D REMARK 210 -TRIS-HCL(PH7.0); 100MM NACL; REMARK 210 1MM D-DTT; 0.02% NAN3; 90% REMARK 210 H2O, 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY, 3D_ REMARK 210 13C-SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR 3.5, NMRPIPE REMARK 210 20031121, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.9742, CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYANAMICS, REMARK 210 SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION, STRUCTURES REMARK 210 WITH THE LOWEST ENERGY, REMARK 210 STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 THR A 796 155.56 -37.74 REMARK 500 1 CYS A 812 142.67 -37.71 REMARK 500 1 GLU A 868 48.18 74.50 REMARK 500 1 SER A 876 83.92 -58.85 REMARK 500 2 GLU A 799 52.17 -100.00 REMARK 500 2 ASP A 862 109.43 -41.58 REMARK 500 2 GLU A 868 46.73 72.30 REMARK 500 2 SER A 876 98.02 -54.47 REMARK 500 3 VAL A 791 40.28 -103.70 REMARK 500 3 SER A 795 -65.48 -90.97 REMARK 500 3 LYS A 800 51.64 -115.14 REMARK 500 3 PHE A 810 -35.68 -37.56 REMARK 500 3 CYS A 812 153.26 -42.26 REMARK 500 3 ASP A 862 117.35 -36.60 REMARK 500 3 SER A 876 140.12 -35.01 REMARK 500 3 SER A 878 120.00 -39.47 REMARK 500 4 CYS A 812 161.76 -44.39 REMARK 500 4 ASP A 862 102.88 -34.95 REMARK 500 4 GLU A 868 47.52 71.52 REMARK 500 4 SER A 876 142.69 -35.23 REMARK 500 5 SER A 786 151.68 -43.58 REMARK 500 5 SER A 797 66.18 -115.00 REMARK 500 5 GLU A 815 -70.82 -41.19 REMARK 500 5 ASP A 862 101.09 -35.70 REMARK 500 5 SER A 876 131.79 -39.19 REMARK 500 6 SER A 788 140.48 -37.49 REMARK 500 6 ARG A 793 74.91 -118.59 REMARK 500 6 GLU A 799 50.39 -99.05 REMARK 500 6 CYS A 812 152.01 -49.70 REMARK 500 6 ALA A 837 33.67 -90.09 REMARK 500 6 ASP A 862 106.64 -35.05 REMARK 500 6 GLU A 868 42.51 70.72 REMARK 500 6 SER A 876 143.43 -35.55 REMARK 500 7 SER A 788 123.23 -170.63 REMARK 500 7 GLU A 799 42.70 -94.58 REMARK 500 7 CYS A 812 155.27 -44.89 REMARK 500 7 ALA A 837 34.54 -93.96 REMARK 500 7 ASP A 862 103.53 -46.53 REMARK 500 7 ASN A 869 112.32 -162.16 REMARK 500 7 ASN A 877 40.97 -109.62 REMARK 500 8 SER A 785 42.09 -101.66 REMARK 500 8 LYS A 802 159.74 -46.25 REMARK 500 8 CYS A 812 159.56 -41.22 REMARK 500 8 ASN A 869 114.55 -161.75 REMARK 500 8 SER A 876 105.15 -56.64 REMARK 500 8 SER A 881 -33.57 -39.34 REMARK 500 9 SER A 786 41.62 -95.53 REMARK 500 9 GLU A 815 -71.77 -49.94 REMARK 500 9 ALA A 837 30.06 -90.36 REMARK 500 9 ASP A 862 108.21 -34.52 REMARK 500 9 ASN A 877 119.45 -163.17 REMARK 500 10 THR A 796 -57.34 -125.44 REMARK 500 10 SER A 797 172.93 -50.27 REMARK 500 10 ASP A 862 113.80 -34.42 REMARK 500 10 ASN A 869 111.57 -161.66 REMARK 500 10 SER A 876 121.25 -34.93 REMARK 500 10 SER A 882 97.05 -56.74 REMARK 500 11 VAL A 791 28.23 41.08 REMARK 500 11 LYS A 860 -60.77 -94.27 REMARK 500 11 ASP A 862 98.99 -34.54 REMARK 500 11 SER A 876 100.31 -54.37 REMARK 500 11 PRO A 880 99.78 -69.68 REMARK 500 11 SER A 882 93.31 -62.85 REMARK 500 12 SER A 797 85.89 -65.14 REMARK 500 12 GLU A 799 52.44 -92.07 REMARK 500 12 LYS A 800 71.90 -114.24 REMARK 500 12 CYS A 812 162.44 -41.41 REMARK 500 12 VAL A 833 92.42 -61.98 REMARK 500 12 GLU A 868 45.69 72.23 REMARK 500 12 SER A 876 142.77 -34.58 REMARK 500 13 SER A 785 112.37 -169.71 REMARK 500 13 PHE A 792 115.93 -165.56 REMARK 500 13 LEU A 798 -177.95 -58.60 REMARK 500 13 LYS A 800 46.21 -82.07 REMARK 500 13 CYS A 812 141.15 -39.51 REMARK 500 13 ALA A 837 36.51 -97.03 REMARK 500 13 ASP A 862 110.03 -35.70 REMARK 500 13 GLU A 868 40.43 71.44 REMARK 500 14 SER A 786 170.46 -49.69 REMARK 500 14 SER A 789 109.22 -166.61 REMARK 500 14 ARG A 793 -58.69 -125.07 REMARK 500 14 PRO A 809 -164.05 -69.76 REMARK 500 14 CYS A 812 152.12 -35.17 REMARK 500 14 GLU A 816 -71.84 -43.25 REMARK 500 14 LYS A 860 -61.79 -91.88 REMARK 500 14 GLU A 868 48.15 72.26 REMARK 500 14 SER A 876 118.17 -35.98 REMARK 500 15 SER A 788 -61.43 -134.57 REMARK 500 15 ARG A 793 -73.16 -39.56 REMARK 500 15 TYR A 794 85.96 -55.24 REMARK 500 15 CYS A 812 151.61 -46.24 REMARK 500 15 ALA A 837 37.25 -90.90 REMARK 500 15 ASP A 862 96.70 -39.67 REMARK 500 15 GLU A 868 44.05 74.42 REMARK 500 15 SER A 876 130.23 -35.04 REMARK 500 15 PRO A 880 98.58 -69.78 REMARK 500 15 SER A 881 81.94 -67.99 REMARK 500 16 ARG A 793 -47.78 -130.54 REMARK 500 16 GLU A 799 117.13 -34.82 REMARK 500 16 LYS A 802 179.31 -56.69 REMARK 500 16 PHE A 810 -35.05 -36.96 REMARK 500 16 CYS A 812 150.76 -41.14 REMARK 500 16 GLU A 816 -72.77 -40.80 REMARK 500 16 ALA A 837 31.35 -90.00 REMARK 500 16 ASP A 862 114.93 -34.41 REMARK 500 16 SER A 876 156.87 -38.67 REMARK 500 16 PRO A 880 85.13 -69.80 REMARK 500 17 SER A 785 50.36 39.50 REMARK 500 17 CYS A 812 170.03 -50.35 REMARK 500 17 ASP A 862 105.01 -37.71 REMARK 500 17 SER A 878 107.08 -37.46 REMARK 500 17 PRO A 880 94.37 -69.71 REMARK 500 18 GLU A 799 47.02 -87.95 REMARK 500 18 LYS A 800 43.19 -89.80 REMARK 500 18 CYS A 812 156.67 -39.82 REMARK 500 18 GLU A 815 -71.37 -36.52 REMARK 500 18 SER A 882 -175.65 -57.82 REMARK 500 19 CYS A 812 170.19 -54.10 REMARK 500 19 ALA A 837 34.62 -90.02 REMARK 500 19 GLU A 868 46.81 71.97 REMARK 500 19 SER A 876 149.80 -37.55 REMARK 500 20 SER A 797 100.96 -46.38 REMARK 500 20 ALA A 837 34.72 -90.01 REMARK 500 20 ASP A 862 106.53 -34.53 REMARK 500 20 SER A 876 118.60 -36.44 REMARK 500 REMARK 500 REMARK: NULL
DBREF 2DO4 A 791 877 UNP Q15020 SART3_HUMAN 791 877
SEQADV 2DO4 GLY A 784 UNP Q15020 CLONING ARTIFACT SEQADV 2DO4 SER A 785 UNP Q15020 CLONING ARTIFACT SEQADV 2DO4 SER A 786 UNP Q15020 CLONING ARTIFACT SEQADV 2DO4 GLY A 787 UNP Q15020 CLONING ARTIFACT SEQADV 2DO4 SER A 788 UNP Q15020 CLONING ARTIFACT SEQADV 2DO4 SER A 789 UNP Q15020 CLONING ARTIFACT SEQADV 2DO4 GLY A 790 UNP Q15020 CLONING ARTIFACT SEQADV 2DO4 SER A 878 UNP Q15020 CLONING ARTIFACT SEQADV 2DO4 GLY A 879 UNP Q15020 CLONING ARTIFACT SEQADV 2DO4 PRO A 880 UNP Q15020 CLONING ARTIFACT SEQADV 2DO4 SER A 881 UNP Q15020 CLONING ARTIFACT SEQADV 2DO4 SER A 882 UNP Q15020 CLONING ARTIFACT SEQADV 2DO4 GLY A 883 UNP Q15020 CLONING ARTIFACT
SEQRES 1 A 100 GLY SER SER GLY SER SER GLY VAL PHE ARG TYR SER THR SEQRES 2 A 100 SER LEU GLU LYS HIS LYS LEU PHE ILE SER GLY LEU PRO SEQRES 3 A 100 PHE SER CYS THR LYS GLU GLU LEU GLU GLU ILE CYS LYS SEQRES 4 A 100 ALA HIS GLY THR VAL LYS ASP LEU ARG LEU VAL THR ASN SEQRES 5 A 100 ARG ALA GLY LYS PRO LYS GLY LEU ALA TYR VAL GLU TYR SEQRES 6 A 100 GLU ASN GLU SER GLN ALA SER GLN ALA VAL MET LYS MET SEQRES 7 A 100 ASP GLY MET THR ILE LYS GLU ASN ILE ILE LYS VAL ALA SEQRES 8 A 100 ILE SER ASN SER GLY PRO SER SER GLY
HELIX 1 1 LYS A 814 ALA A 823 1 10 HELIX 2 2 GLU A 851 MET A 861 1 11
SHEET 1 A 5 VAL A 827 LEU A 832 0 SHEET 2 A 5 LEU A 843 TYR A 848 -1 O TYR A 845 N ARG A 831 SHEET 3 A 5 LYS A 802 SER A 806 -1 N ILE A 805 O ALA A 844 SHEET 4 A 5 ILE A 870 ILE A 875 -1 O ALA A 874 N PHE A 804 SHEET 5 A 5 MET A 864 THR A 865 -1 N MET A 864 O ILE A 871
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000