10 20 30 40 50 60 70 80 2DNZ - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER RNA BINDING PROTEIN 27-APR-06 2DNZ
TITLE SOLUTION STRUCTURE OF THE SECOND RNA BINDING DOMAIN OF RNA TITLE 2 BINDING MOTIF PROTEIN 23
COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROBABLE RNA-BINDING PROTEIN 23; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RNA RECOGNITION MOTIF; COMPND 5 SYNONYM: RNA-BINDING MOTIF PROTEIN 23, RNA- BINDING REGION- COMPND 6 CONTAINING PROTEIN 4, SPLICING FACTOR SF2; COMPND 7 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: RBM23; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P050516-02; SOURCE 8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS
KEYWDS RNA RECOGNITION MOTIF, RRM, RNA BINDING DOMAIN, RBD, RNP, KEYWDS 2 STRUCTURAL GENOMICS, NPPSFA, NATIONAL PROJECT ON PROTEIN KEYWDS 3 STRUCTURAL AND FUNCTIONAL ANALYSES, RIKEN STRUCTURAL KEYWDS 4 GENOMICS/PROTEOMICS INITIATIVE, RSGI, RNA BINDING PROTEIN
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR S.SUZUKI,Y.MUTO,M.INOUE,T.KIGAWA,T.TERADA,M.SHIROUZU, AUTHOR 2 S.YOKOYAMA,RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE AUTHOR 3 (RSGI)
REVDAT 2 24-FEB-09 2DNZ 1 VERSN REVDAT 1 17-APR-07 2DNZ 0
JRNL AUTH S.SUZUKI,Y.MUTO,M.INOUE,T.KIGAWA,T.TERADA, JRNL AUTH 2 M.SHIROUZU,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE SECOND RNA BINDING JRNL TITL 2 DOMAIN OF RNA BINDING MOTIF PROTEIN 23 JRNL REF TO BE PUBLISHED JRNL REFN
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 2.0.17 REMARK 3 AUTHORS : GUNTERT, P. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 2DNZ COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 02-MAY-06. REMARK 100 THE RCSB ID CODE IS RCSB025637.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.15MM 13C/15N-PROTEIN; 20MM REMARK 210 D-TRIS-HCL(PH7.0); 100MM NACL; REMARK 210 1MM D-DTT; 0.02% NAN3; 90% REMARK 210 H2O, 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY, 3D_ REMARK 210 13C-SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR 3.5, NMRPIPE REMARK 210 20031121, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.9321, OLIVIA 1.10.5, REMARK 210 CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYANAMICS, REMARK 210 SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION, STRUCTURES REMARK 210 WITH THE LOWEST ENERGY, REMARK 210 STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THE STRUCTURE WAS DETERMINED USING TRIPLE-RESONANCE NMR REMARK 210 SPECTROSCOPY.
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 228 120.30 -37.13 REMARK 500 1 SER A 235 44.67 72.82 REMARK 500 1 ILE A 240 152.20 -44.66 REMARK 500 1 PRO A 251 2.88 -69.81 REMARK 500 1 SER A 269 103.78 -38.18 REMARK 500 2 SER A 229 33.48 -92.20 REMARK 500 2 SER A 235 47.24 74.12 REMARK 500 2 ILE A 240 154.47 -40.07 REMARK 500 2 PRO A 251 3.02 -69.79 REMARK 500 2 SER A 269 103.32 -35.34 REMARK 500 2 LEU A 295 -62.12 -98.17 REMARK 500 2 SER A 317 99.93 -69.15 REMARK 500 3 SER A 235 43.67 72.71 REMARK 500 3 ILE A 240 147.90 -38.64 REMARK 500 3 PRO A 251 2.42 -69.70 REMARK 500 3 ASP A 263 -179.40 -58.04 REMARK 500 3 SER A 269 118.63 -34.94 REMARK 500 3 ASN A 291 108.78 -46.03 REMARK 500 3 GLU A 307 78.50 -105.82 REMARK 500 4 SER A 229 91.53 -65.43 REMARK 500 4 SER A 235 44.20 71.98 REMARK 500 4 PRO A 251 2.92 -69.79 REMARK 500 4 ASP A 263 -179.26 -68.36 REMARK 500 4 ASN A 291 98.16 -45.15 REMARK 500 4 ALA A 296 45.09 -105.02 REMARK 500 4 SER A 316 52.34 72.33 REMARK 500 5 SER A 235 45.71 71.32 REMARK 500 5 PRO A 251 2.52 -69.76 REMARK 500 5 SER A 269 106.77 -38.59 REMARK 500 5 ASN A 291 103.44 -55.09 REMARK 500 5 GLU A 294 99.31 -56.70 REMARK 500 5 SER A 317 42.53 34.55 REMARK 500 6 SER A 235 45.61 72.29 REMARK 500 6 PRO A 251 2.93 -69.82 REMARK 500 6 ASP A 263 -178.07 -62.46 REMARK 500 6 SER A 269 110.15 -34.98 REMARK 500 6 ALA A 296 41.02 -105.70 REMARK 500 6 THR A 306 97.16 -66.91 REMARK 500 6 SER A 313 123.66 -36.84 REMARK 500 6 PRO A 315 2.46 -69.78 REMARK 500 6 SER A 316 144.27 -34.58 REMARK 500 7 PRO A 251 2.27 -69.77 REMARK 500 7 SER A 269 106.67 -34.94 REMARK 500 7 ASN A 291 105.76 -43.52 REMARK 500 7 VAL A 305 125.06 -39.30 REMARK 500 8 SER A 235 43.20 73.05 REMARK 500 8 ILE A 240 150.75 -35.38 REMARK 500 8 PRO A 251 3.46 -69.70 REMARK 500 8 SER A 269 94.33 -39.21 REMARK 500 8 ASN A 291 103.41 -46.20 REMARK 500 8 GLU A 294 95.07 -43.35 REMARK 500 9 SER A 225 51.33 37.35 REMARK 500 9 SER A 235 46.59 71.27 REMARK 500 9 ILE A 240 131.67 -35.55 REMARK 500 9 PRO A 251 0.84 -69.82 REMARK 500 9 LYS A 254 108.11 -57.89 REMARK 500 9 GLU A 294 96.29 -67.20 REMARK 500 9 LEU A 295 -64.20 -91.12 REMARK 500 9 ALA A 296 36.59 -98.71 REMARK 500 9 VAL A 305 97.46 -46.26 REMARK 500 9 PRO A 315 -176.83 -69.74 REMARK 500 10 SER A 235 47.09 73.85 REMARK 500 10 PRO A 251 2.60 -69.73 REMARK 500 10 ASP A 263 -177.43 -50.63 REMARK 500 10 ASN A 291 107.29 -44.47 REMARK 500 10 GLU A 294 93.42 -43.96 REMARK 500 10 PRO A 315 2.47 -69.70 REMARK 500 11 SER A 235 46.63 74.39 REMARK 500 11 PRO A 251 2.98 -69.72 REMARK 500 11 SER A 269 107.87 -41.34 REMARK 500 11 GLU A 294 97.92 -56.97 REMARK 500 11 VAL A 305 94.94 -52.32 REMARK 500 11 PRO A 315 94.45 -69.79 REMARK 500 11 SER A 317 139.49 -37.43 REMARK 500 12 SER A 226 175.48 -59.87 REMARK 500 12 SER A 235 46.15 73.71 REMARK 500 12 ILE A 240 139.59 -38.73 REMARK 500 12 PRO A 251 2.78 -69.80 REMARK 500 12 SER A 269 108.93 -34.62 REMARK 500 12 ASP A 279 124.97 -172.58 REMARK 500 12 LEU A 295 -60.47 -93.99 REMARK 500 13 SER A 225 108.60 -41.71 REMARK 500 13 SER A 235 46.81 74.58 REMARK 500 13 ILE A 240 136.70 -38.42 REMARK 500 13 SER A 269 112.06 -38.94 REMARK 500 13 ASN A 291 106.25 -42.14 REMARK 500 13 GLU A 294 90.97 -56.22 REMARK 500 14 PRO A 251 2.34 -69.73 REMARK 500 14 ASP A 263 -175.44 -51.50 REMARK 500 14 SER A 269 132.31 -37.37 REMARK 500 14 GLU A 294 105.83 -57.19 REMARK 500 14 THR A 306 151.68 -46.00 REMARK 500 14 ASP A 310 179.78 -54.22 REMARK 500 15 SER A 235 46.81 74.28 REMARK 500 15 ILE A 240 128.64 -36.74 REMARK 500 15 PRO A 251 2.74 -69.74 REMARK 500 15 ASP A 263 176.46 -51.60 REMARK 500 15 ASN A 291 108.07 -47.81 REMARK 500 15 GLU A 307 79.62 -101.17 REMARK 500 16 SER A 226 95.48 -66.11 REMARK 500 16 PRO A 251 1.88 -69.78 REMARK 500 16 SER A 269 92.22 -61.26 REMARK 500 16 GLU A 294 95.05 -55.29 REMARK 500 16 VAL A 305 133.09 -35.59 REMARK 500 16 SER A 313 -59.72 -127.73 REMARK 500 17 SER A 235 43.01 74.64 REMARK 500 17 GLU A 294 102.53 -59.73 REMARK 500 17 LEU A 295 -63.36 -92.79 REMARK 500 17 VAL A 305 136.10 -34.27 REMARK 500 18 SER A 235 46.73 73.47 REMARK 500 18 PRO A 251 2.75 -69.82 REMARK 500 18 ASP A 263 -176.97 -61.92 REMARK 500 18 ASN A 291 103.60 -37.19 REMARK 500 18 GLU A 294 96.75 -57.67 REMARK 500 18 ALA A 296 32.05 -99.30 REMARK 500 18 VAL A 305 123.35 -34.17 REMARK 500 19 SER A 229 109.03 -52.73 REMARK 500 19 SER A 235 47.21 74.03 REMARK 500 19 ASN A 239 -33.76 -34.62 REMARK 500 19 PRO A 251 2.81 -69.77 REMARK 500 19 ASP A 263 -176.69 -61.40 REMARK 500 19 ASN A 291 107.19 -45.22 REMARK 500 19 GLU A 294 103.47 -50.82 REMARK 500 19 VAL A 305 94.44 -45.10 REMARK 500 19 SER A 313 121.25 -170.60 REMARK 500 20 SER A 225 43.58 -101.58 REMARK 500 20 SER A 235 45.25 74.16 REMARK 500 20 ILE A 240 106.25 -50.63 REMARK 500 20 PRO A 251 2.03 -69.72 REMARK 500 20 SER A 269 124.79 -38.06 REMARK 500 20 ASP A 279 113.09 -162.59 REMARK 500 20 ASN A 291 104.93 -41.50 REMARK 500 REMARK 500 REMARK: NULL
REMARK 650 REMARK 650 HELIX REMARK 650 DETERMINATION METHOD: AUTHOR DETERMINED
REMARK 700 REMARK 700 SHEET REMARK 700 DETERMINATION METHOD: AUTHOR DETERMINED
DBREF 2DNZ A 231 312 UNP Q86U06 RBM23_HUMAN 231 312
SEQADV 2DNZ GLY A 224 UNP Q86U06 CLONING ARTIFACT SEQADV 2DNZ SER A 225 UNP Q86U06 CLONING ARTIFACT SEQADV 2DNZ SER A 226 UNP Q86U06 CLONING ARTIFACT SEQADV 2DNZ GLY A 227 UNP Q86U06 CLONING ARTIFACT SEQADV 2DNZ SER A 228 UNP Q86U06 CLONING ARTIFACT SEQADV 2DNZ SER A 229 UNP Q86U06 CLONING ARTIFACT SEQADV 2DNZ GLY A 230 UNP Q86U06 CLONING ARTIFACT SEQADV 2DNZ SER A 313 UNP Q86U06 CLONING ARTIFACT SEQADV 2DNZ GLY A 314 UNP Q86U06 CLONING ARTIFACT SEQADV 2DNZ PRO A 315 UNP Q86U06 CLONING ARTIFACT SEQADV 2DNZ SER A 316 UNP Q86U06 CLONING ARTIFACT SEQADV 2DNZ SER A 317 UNP Q86U06 CLONING ARTIFACT SEQADV 2DNZ GLY A 318 UNP Q86U06 CLONING ARTIFACT
SEQRES 1 A 95 GLY SER SER GLY SER SER GLY LEU TYR VAL GLY SER LEU SEQRES 2 A 95 HIS PHE ASN ILE THR GLU ASP MET LEU ARG GLY ILE PHE SEQRES 3 A 95 GLU PRO PHE GLY LYS ILE ASP ASN ILE VAL LEU MET LYS SEQRES 4 A 95 ASP SER ASP THR GLY ARG SER LYS GLY TYR GLY PHE ILE SEQRES 5 A 95 THR PHE SER ASP SER GLU CYS ALA ARG ARG ALA LEU GLU SEQRES 6 A 95 GLN LEU ASN GLY PHE GLU LEU ALA GLY ARG PRO MET ARG SEQRES 7 A 95 VAL GLY HIS VAL THR GLU ARG LEU ASP GLY GLY SER GLY SEQRES 8 A 95 PRO SER SER GLY
HELIX 1 1 GLU A 242 PHE A 249 1 8 HELIX 2 2 SER A 280 LEU A 290 1 11
SHEET 1 A 4 ILE A 255 LEU A 260 0 SHEET 2 A 4 TYR A 272 PHE A 277 -1 O PHE A 274 N VAL A 259 SHEET 3 A 4 LEU A 231 GLY A 234 -1 N LEU A 231 O ILE A 275 SHEET 4 A 4 ARG A 301 HIS A 304 -1 O GLY A 303 N TYR A 232
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000