10 20 30 40 50 60 70 80 2DNX - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER TRANSPORT PROTEIN 26-APR-06 2DNX
TITLE SOLUTION STRUCTURE OF RSGI RUH-063, AN N-TERMINAL DOMAIN OF TITLE 2 SYNTAXIN 12 FROM HUMAN CDNA
COMPND MOL_ID: 1; COMPND 2 MOLECULE: SYNTAXIN-12; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: N-TERMINAL DOMAIN, RESIDUES 8-124; COMPND 5 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: STX12; SOURCE 6 EXPRESSION_SYSTEM: CELL FREE SYNTHESIS; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: P050302-94; SOURCE 9 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS
KEYWDS SYNTAXIN, SNARE, HABC DOMAIN, UP AND DOWN THREE HELIX KEYWDS 2 BUNDLE, LEFT-HANDED TWIST, MEMBRANE FUSION, VESICLE KEYWDS 3 TRANSPORT, STRUCTURAL GENOMICS, NPPSFA, NATIONAL PROJECT ON KEYWDS 4 PROTEIN STRUCTURAL AND FUNCTIONAL ANALYSES, RIKEN KEYWDS 5 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI, TRANSPORT KEYWDS 6 PROTEIN
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR T.ABE,H.HIROTA,Y.MUTO,S.YOKOYAMA,RIKEN STRUCTURAL AUTHOR 2 GENOMICS/PROTEOMICS INITIATIVE (RSGI)
REVDAT 2 24-FEB-09 2DNX 1 VERSN REVDAT 1 26-OCT-06 2DNX 0
JRNL AUTH T.ABE,H.HIROTA,Y.MUTO,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF RSGI RUH-063, AN N-TERMINAL JRNL TITL 2 DOMAIN OF SYNTAXIN 12 FROM HUMAN CDNA JRNL REF TO BE PUBLISHED JRNL REFN
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 1.0.8 REMARK 3 AUTHORS : GUNTERT, P. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 2DNX COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 02-MAY-06. REMARK 100 THE RCSB ID CODE IS RCSB025635.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.35MM RSGI RUH-063 U-15N, REMARK 210 13C; 20MM D-TRIS-HCL; 100MM REMARK 210 NACL; 1MM D-DTT; 0.02% NAN3; REMARK 210 10% D2O, 90% H2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY, 3D_ REMARK 210 13C-SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : JEOL REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR 3.5, NMRPIPE REMARK 210 20031121, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.932 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION, STRUCTURES REMARK 210 WITH THE LOWEST ENERGY, REMARK 210 STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 5 104.68 -174.16 REMARK 500 1 SER A 6 -58.26 -170.69 REMARK 500 1 GLN A 8 80.53 66.74 REMARK 500 1 THR A 42 46.43 -142.77 REMARK 500 1 LYS A 43 -59.40 74.54 REMARK 500 1 LEU A 77 157.31 -47.03 REMARK 500 1 ALA A 123 -90.55 54.36 REMARK 500 1 ARG A 124 89.31 78.27 REMARK 500 2 SER A 2 161.35 64.05 REMARK 500 2 GLN A 8 108.95 58.62 REMARK 500 2 ARG A 10 76.25 43.68 REMARK 500 2 SER A 46 101.66 -170.88 REMARK 500 2 GLN A 54 -70.14 -51.74 REMARK 500 2 GLN A 89 -70.36 -74.96 REMARK 500 2 ALA A 123 -171.42 -57.78 REMARK 500 2 SER A 125 90.77 50.32 REMARK 500 3 SER A 2 133.94 -39.92 REMARK 500 3 SER A 3 94.69 -175.44 REMARK 500 3 SER A 5 85.12 61.82 REMARK 500 3 GLN A 8 65.91 -152.26 REMARK 500 3 GLN A 39 -70.57 -40.50 REMARK 500 3 THR A 42 -47.01 -155.42 REMARK 500 3 LYS A 43 64.52 73.36 REMARK 500 3 GLN A 44 71.83 -164.04 REMARK 500 3 ASP A 45 134.31 63.06 REMARK 500 3 SER A 46 69.11 164.57 REMARK 500 3 PRO A 78 -163.29 -74.95 REMARK 500 3 ALA A 123 156.20 -46.68 REMARK 500 3 SER A 125 -60.51 -100.38 REMARK 500 4 SER A 2 170.91 62.51 REMARK 500 4 GLN A 8 -172.81 62.09 REMARK 500 4 ARG A 10 71.44 47.80 REMARK 500 4 LYS A 43 177.96 163.80 REMARK 500 4 ASP A 45 -60.08 73.30 REMARK 500 4 LEU A 77 156.83 -41.87 REMARK 500 4 ALA A 123 -176.88 72.23 REMARK 500 4 SER A 129 110.31 -173.10 REMARK 500 5 SER A 2 137.06 62.28 REMARK 500 5 SER A 3 134.73 -173.71 REMARK 500 5 GLN A 8 143.27 61.27 REMARK 500 5 LEU A 9 154.07 -47.13 REMARK 500 5 ARG A 10 75.53 -66.64 REMARK 500 5 THR A 42 170.90 -53.67 REMARK 500 5 GLN A 44 85.24 -158.97 REMARK 500 5 LEU A 77 156.89 -43.14 REMARK 500 5 PRO A 78 -164.78 -75.02 REMARK 500 5 ARG A 124 -63.56 -160.29 REMARK 500 5 SER A 125 71.77 81.54 REMARK 500 5 SER A 128 -64.74 -163.89 REMARK 500 5 SER A 129 88.64 70.65 REMARK 500 6 SER A 5 -53.05 -165.11 REMARK 500 6 SER A 6 82.10 42.05 REMARK 500 6 GLN A 8 162.85 175.58 REMARK 500 6 LEU A 9 153.45 -49.09 REMARK 500 6 ARG A 10 63.70 -69.22 REMARK 500 6 MET A 37 -70.05 -61.70 REMARK 500 6 LYS A 43 -179.58 73.59 REMARK 500 6 GLN A 44 -78.29 -47.46 REMARK 500 6 LEU A 74 -70.18 -55.15 REMARK 500 6 LEU A 77 156.31 -49.09 REMARK 500 6 PRO A 78 -166.73 -74.97 REMARK 500 6 SER A 101 -70.02 -44.93 REMARK 500 6 ALA A 123 -97.13 -61.59 REMARK 500 6 ARG A 124 -65.66 -129.65 REMARK 500 6 SER A 125 108.59 57.42 REMARK 500 6 SER A 128 80.02 -168.55 REMARK 500 7 SER A 3 152.70 178.56 REMARK 500 7 GLN A 8 168.04 176.52 REMARK 500 7 LEU A 9 172.44 -51.22 REMARK 500 7 ARG A 10 72.15 -69.75 REMARK 500 7 THR A 42 -50.59 -159.86 REMARK 500 7 ASP A 45 -48.78 -175.32 REMARK 500 7 SER A 46 127.24 66.33 REMARK 500 7 LEU A 49 -72.02 -66.94 REMARK 500 7 LEU A 77 157.37 -48.08 REMARK 500 7 PRO A 78 -166.44 -74.97 REMARK 500 7 ALA A 123 177.70 55.80 REMARK 500 7 SER A 125 104.30 -40.46 REMARK 500 7 SER A 128 -60.87 -175.91 REMARK 500 8 SER A 5 135.79 -177.62 REMARK 500 8 SER A 6 139.07 -172.96 REMARK 500 8 LEU A 9 -176.65 -57.92 REMARK 500 8 THR A 42 155.30 -47.46 REMARK 500 8 GLN A 44 145.73 62.66 REMARK 500 8 GLN A 50 -37.27 -37.34 REMARK 500 8 LEU A 77 152.89 -47.88 REMARK 500 8 ALA A 123 142.70 64.85 REMARK 500 8 ARG A 124 84.76 -164.36 REMARK 500 8 SER A 125 104.84 64.23 REMARK 500 8 SER A 128 99.40 -177.84 REMARK 500 9 SER A 5 -59.37 -174.84 REMARK 500 9 ARG A 10 85.48 44.45 REMARK 500 9 LYS A 43 129.30 65.76 REMARK 500 9 GLN A 44 114.53 -39.23 REMARK 500 9 ASP A 45 161.91 165.07 REMARK 500 9 SER A 46 84.16 78.77 REMARK 500 9 GLN A 50 -36.12 -36.59 REMARK 500 9 LEU A 74 -70.02 -63.18 REMARK 500 9 LEU A 77 157.07 -44.31 REMARK 500 9 ALA A 123 165.53 62.36 REMARK 500 9 SER A 125 -55.58 -141.13 REMARK 500 10 SER A 3 169.38 63.22 REMARK 500 10 GLN A 8 54.12 -145.25 REMARK 500 10 GLN A 44 -178.91 79.29 REMARK 500 10 GLN A 55 -32.58 -39.18 REMARK 500 10 LEU A 77 154.07 -41.86 REMARK 500 10 PRO A 78 -165.27 -74.97 REMARK 500 10 ALA A 123 179.88 53.66 REMARK 500 10 ARG A 124 -58.72 -144.44 REMARK 500 10 SER A 125 82.10 -153.09 REMARK 500 10 SER A 129 109.98 -163.95 REMARK 500 11 SER A 3 105.26 56.40 REMARK 500 11 GLN A 8 166.27 56.44 REMARK 500 11 ARG A 10 93.89 54.17 REMARK 500 11 THR A 42 -39.47 -174.58 REMARK 500 11 GLN A 44 -81.60 -45.98 REMARK 500 11 SER A 46 110.71 172.10 REMARK 500 11 GLN A 50 -35.36 -38.76 REMARK 500 11 PRO A 78 -167.16 -75.05 REMARK 500 11 ALA A 102 -38.23 -36.96 REMARK 500 11 ALA A 123 -177.79 65.18 REMARK 500 11 ARG A 124 170.91 -50.15 REMARK 500 11 SER A 125 70.24 64.20 REMARK 500 11 SER A 128 88.40 44.79 REMARK 500 11 SER A 129 167.14 74.64 REMARK 500 12 SER A 2 75.65 56.35 REMARK 500 12 SER A 6 -58.10 -136.91 REMARK 500 12 GLN A 8 167.75 66.24 REMARK 500 12 LYS A 43 -176.54 62.61 REMARK 500 12 SER A 46 64.36 -162.72 REMARK 500 12 LEU A 77 157.33 -43.22 REMARK 500 12 ALA A 123 176.51 72.66 REMARK 500 12 ARG A 124 170.12 -51.55 REMARK 500 12 SER A 125 -78.29 63.97 REMARK 500 12 SER A 128 82.80 50.53 REMARK 500 12 SER A 129 91.17 48.51 REMARK 500 13 SER A 2 -59.56 -140.71 REMARK 500 13 SER A 3 -68.51 75.69 REMARK 500 13 SER A 5 94.74 62.11 REMARK 500 13 LEU A 9 114.62 61.07 REMARK 500 13 ARG A 10 77.56 43.32 REMARK 500 13 GLN A 44 -95.41 -153.48 REMARK 500 13 ASP A 45 -65.81 -167.16 REMARK 500 13 SER A 46 86.56 69.70 REMARK 500 13 LEU A 49 -71.91 -51.74 REMARK 500 13 LEU A 74 -71.74 -47.10 REMARK 500 13 LEU A 77 154.31 -45.50 REMARK 500 13 ARG A 124 132.08 -39.01 REMARK 500 13 SER A 129 142.48 63.81 REMARK 500 14 SER A 2 69.62 71.66 REMARK 500 14 SER A 5 124.09 -173.86 REMARK 500 14 ARG A 10 78.03 -68.97 REMARK 500 14 THR A 42 133.67 -173.71 REMARK 500 14 LYS A 43 179.07 70.97 REMARK 500 14 ASP A 45 -65.63 -176.81 REMARK 500 14 LEU A 49 -71.28 -37.95 REMARK 500 14 LEU A 77 156.99 -46.77 REMARK 500 14 PRO A 78 -168.51 -75.04 REMARK 500 14 ALA A 123 -76.97 78.67 REMARK 500 14 SER A 125 88.74 61.59 REMARK 500 14 SER A 129 91.61 43.83 REMARK 500 15 SER A 2 84.12 -159.44 REMARK 500 15 SER A 3 -58.18 -145.14 REMARK 500 15 GLN A 8 74.06 -167.41 REMARK 500 15 LEU A 9 91.78 58.49 REMARK 500 15 LYS A 43 83.44 32.83 REMARK 500 15 GLN A 44 85.46 -170.70 REMARK 500 15 SER A 46 108.61 57.82 REMARK 500 15 LEU A 49 -72.04 -45.42 REMARK 500 15 LEU A 77 153.78 -44.87 REMARK 500 15 PRO A 78 -169.69 -74.96 REMARK 500 15 ALA A 123 151.10 64.62 REMARK 500 15 SER A 129 101.78 64.78 REMARK 500 16 SER A 3 142.96 -170.91 REMARK 500 16 SER A 6 115.35 64.23 REMARK 500 16 GLN A 8 63.88 -168.18 REMARK 500 16 ARG A 10 80.17 -62.00 REMARK 500 16 GLN A 44 43.83 173.49 REMARK 500 16 ASP A 45 107.87 58.52 REMARK 500 16 LEU A 63 -37.82 -39.55 REMARK 500 16 LEU A 77 157.38 -47.61 REMARK 500 16 ALA A 123 169.24 62.17 REMARK 500 16 ARG A 124 133.10 67.95 REMARK 500 16 SER A 125 89.74 62.18 REMARK 500 16 SER A 128 149.69 63.72 REMARK 500 16 SER A 129 80.03 -62.41 REMARK 500 17 ARG A 10 70.51 41.05 REMARK 500 17 THR A 42 -50.21 -143.25 REMARK 500 17 LYS A 43 -168.41 -112.60 REMARK 500 17 ASP A 45 92.23 165.34 REMARK 500 17 SER A 46 92.74 -170.78 REMARK 500 17 LEU A 53 -70.13 -43.74 REMARK 500 17 LEU A 77 157.42 -43.02 REMARK 500 17 ALA A 123 168.27 -45.52 REMARK 500 17 ARG A 124 136.83 -38.67 REMARK 500 17 SER A 125 144.23 -177.86 REMARK 500 17 SER A 129 92.47 73.06 REMARK 500 18 SER A 6 -59.57 176.32 REMARK 500 18 ARG A 10 73.39 -69.31 REMARK 500 18 THR A 42 -46.89 -172.97 REMARK 500 18 LYS A 43 94.73 83.16 REMARK 500 18 SER A 46 82.11 -157.27 REMARK 500 18 GLN A 50 -33.91 -38.36 REMARK 500 18 LEU A 77 157.12 -48.45 REMARK 500 18 ALA A 123 151.95 -42.60 REMARK 500 18 SER A 125 141.41 68.02 REMARK 500 18 SER A 128 -58.89 -126.57 REMARK 500 18 SER A 129 115.87 65.46 REMARK 500 19 SER A 2 168.47 54.93 REMARK 500 19 SER A 6 58.91 -96.67 REMARK 500 19 LEU A 9 -170.47 -170.89 REMARK 500 19 LYS A 43 80.51 -159.53 REMARK 500 19 GLN A 44 77.59 -68.19 REMARK 500 19 ASP A 45 102.62 172.78 REMARK 500 19 SER A 46 121.39 169.92 REMARK 500 19 ALA A 123 175.32 65.25 REMARK 500 19 ARG A 124 86.41 64.83 REMARK 500 19 SER A 125 168.64 175.08 REMARK 500 19 SER A 128 97.15 -174.44 REMARK 500 20 SER A 2 131.23 62.72 REMARK 500 20 SER A 3 91.78 47.62 REMARK 500 20 SER A 6 77.69 -152.78 REMARK 500 20 ARG A 10 84.97 -57.27 REMARK 500 20 GLN A 39 -70.04 -39.16 REMARK 500 20 LYS A 43 148.33 70.01 REMARK 500 20 ASP A 45 90.89 170.72 REMARK 500 20 SER A 46 114.71 176.53 REMARK 500 20 GLN A 57 -73.35 -79.03 REMARK 500 20 PRO A 78 -162.54 -75.05 REMARK 500 20 ALA A 123 122.16 63.95 REMARK 500 20 SER A 125 99.90 -45.48 REMARK 500 REMARK 500 REMARK: NULL
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSO002000522.1 RELATED DB: TARGETDB
DBREF 2DNX A 8 124 UNP Q86Y82 STX12_HUMAN 18 134
SEQADV 2DNX GLY A 1 UNP Q86Y82 CLONING ARTIFACT SEQADV 2DNX SER A 2 UNP Q86Y82 CLONING ARTIFACT SEQADV 2DNX SER A 3 UNP Q86Y82 CLONING ARTIFACT SEQADV 2DNX GLY A 4 UNP Q86Y82 CLONING ARTIFACT SEQADV 2DNX SER A 5 UNP Q86Y82 CLONING ARTIFACT SEQADV 2DNX SER A 6 UNP Q86Y82 CLONING ARTIFACT SEQADV 2DNX GLY A 7 UNP Q86Y82 CLONING ARTIFACT SEQADV 2DNX SER A 125 UNP Q86Y82 CLONING ARTIFACT SEQADV 2DNX GLY A 126 UNP Q86Y82 CLONING ARTIFACT SEQADV 2DNX PRO A 127 UNP Q86Y82 CLONING ARTIFACT SEQADV 2DNX SER A 128 UNP Q86Y82 CLONING ARTIFACT SEQADV 2DNX SER A 129 UNP Q86Y82 CLONING ARTIFACT SEQADV 2DNX GLY A 130 UNP Q86Y82 CLONING ARTIFACT
SEQRES 1 A 130 GLY SER SER GLY SER SER GLY GLN LEU ARG ASP PHE SER SEQRES 2 A 130 SER ILE ILE GLN THR CYS SER GLY ASN ILE GLN ARG ILE SEQRES 3 A 130 SER GLN ALA THR ALA GLN ILE LYS ASN LEU MET SER GLN SEQRES 4 A 130 LEU GLY THR LYS GLN ASP SER SER LYS LEU GLN GLU ASN SEQRES 5 A 130 LEU GLN GLN LEU GLN HIS SER THR ASN GLN LEU ALA LYS SEQRES 6 A 130 GLU THR ASN GLU LEU LEU LYS GLU LEU GLY SER LEU PRO SEQRES 7 A 130 LEU PRO LEU SER THR SER GLU GLN ARG GLN GLN ARG LEU SEQRES 8 A 130 GLN LYS GLU ARG LEU MET ASN ASP PHE SER ALA ALA LEU SEQRES 9 A 130 ASN ASN PHE GLN ALA VAL GLN ARG ARG VAL SER GLU LYS SEQRES 10 A 130 GLU LYS GLU SER ILE ALA ARG SER GLY PRO SER SER GLY
HELIX 1 1 ASP A 11 GLY A 41 1 31 HELIX 2 2 SER A 46 LEU A 77 1 32 HELIX 3 3 SER A 82 ALA A 123 1 42
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000