10 20 30 40 50 60 70 80 2DNQ - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER RNA BINDING PROTEIN 26-APR-06 2DNQ
TITLE SOLUTION STRUCTURE OF RNA BINDING DOMAIN 1 IN RNA-BINDING TITLE 2 PROTEIN 30
COMPND MOL_ID: 1; COMPND 2 MOLECULE: RNA-BINDING PROTEIN 4B; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RNA RECOGNITION MOTIF; COMPND 5 SYNONYM: RNA-BINDING MOTIF PROTEIN 4B, RNA-BINDING PROTEIN COMPND 6 30, RNA-BINDING MOTIF PROTEIN 30; COMPND 7 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: RBM30; SOURCE 6 EXPRESSION_SYSTEM: CELL FREE SYNTHESIS; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: P050704-15; SOURCE 9 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS
KEYWDS RRM DOMAIN,RBD, STRUCTURAL GENOMICS, NPPSFA, NATIONAL KEYWDS 2 PROJECT ON PROTEIN STRUCTURAL AND FUNCTIONAL ANALYSES, KEYWDS 3 RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI, RNA KEYWDS 4 BINDING PROTEIN
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR K.TSUDA,Y.MUTO,M.INOUE,T.KIGAWA,T.TERADA,M.SHIROUZU, AUTHOR 2 S.YOKOYAMA,RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE AUTHOR 3 (RSGI)
REVDAT 2 24-FEB-09 2DNQ 1 VERSN REVDAT 1 26-OCT-06 2DNQ 0
JRNL AUTH K.TSUDA,Y.MUTO,M.INOUE,T.KIGAWA,T.TERADA, JRNL AUTH 2 M.SHIROUZU,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF RNA BINDING DOMAIN 1 IN JRNL TITL 2 RNA-BINDING PROTEIN 30 JRNL REF TO BE PUBLISHED JRNL REFN
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 2.0.17 REMARK 3 AUTHORS : GUNTERT,P REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 2DNQ COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 10-MAY-06. REMARK 100 THE RCSB ID CODE IS RCSB025628.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.17MM 13C-15N PROTEIN, 20MM REMARK 210 D-TRIS-HCL(PH7.0), 100MM NACL, REMARK 210 1MM D-DTT, 0.02% NAN3; 90% REMARK 210 H2O, 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY, 3D_ REMARK 210 13C-SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR 3.5, NMRPIPE REMARK 210 20030801, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.9742, CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS, REMARK 210 RESTRAINTED MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION, STRUCTURES REMARK 210 WITH THE LOWEST ENERGY, REMARK 210 STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A -5 -60.08 -96.92 REMARK 500 1 SER A -2 -48.97 -132.40 REMARK 500 1 MET A 1 158.55 -49.99 REMARK 500 1 PRO A 10 -165.04 -78.66 REMARK 500 1 GLU A 15 -35.06 -38.72 REMARK 500 1 ASN A 36 26.28 47.91 REMARK 500 1 GLU A 43 -75.04 -66.42 REMARK 500 1 ARG A 53 -70.32 -36.64 REMARK 500 1 LEU A 55 -33.90 -34.32 REMARK 500 1 LYS A 59 98.08 -48.97 REMARK 500 1 ASN A 64 77.63 -106.82 REMARK 500 1 ALA A 69 90.97 -69.04 REMARK 500 2 LEU A 29 -61.58 -96.49 REMARK 500 2 GLU A 43 -72.17 -61.79 REMARK 500 2 ASN A 54 -70.23 -60.88 REMARK 500 2 LEU A 55 -35.11 -34.14 REMARK 500 2 HIS A 61 45.61 73.99 REMARK 500 2 ASN A 64 74.50 -108.69 REMARK 500 2 ILE A 65 174.32 -51.56 REMARK 500 3 SER A -5 92.64 -57.55 REMARK 500 3 SER A -1 109.93 -37.27 REMARK 500 3 LYS A 35 55.05 34.77 REMARK 500 3 GLU A 43 -72.86 -69.21 REMARK 500 3 LEU A 55 -35.81 -34.49 REMARK 500 3 HIS A 61 47.83 72.84 REMARK 500 3 LYS A 75 100.92 -54.23 REMARK 500 3 SER A 77 42.36 -88.34 REMARK 500 3 SER A 82 91.65 -67.16 REMARK 500 4 PRO A 10 -168.16 -78.53 REMARK 500 4 LYS A 35 54.26 38.90 REMARK 500 4 GLU A 43 -73.91 -64.66 REMARK 500 4 HIS A 61 49.33 70.28 REMARK 500 4 ALA A 69 95.45 -64.50 REMARK 500 4 LYS A 73 33.17 39.52 REMARK 500 4 SER A 82 -60.10 -128.79 REMARK 500 5 SER A -1 43.22 -99.09 REMARK 500 5 MET A 1 167.15 -45.00 REMARK 500 5 LYS A 35 54.96 34.43 REMARK 500 5 ASN A 54 -73.44 -68.83 REMARK 500 5 HIS A 61 46.68 74.52 REMARK 500 6 ARG A 53 -75.11 -36.46 REMARK 500 6 LEU A 55 -29.50 -39.96 REMARK 500 6 LYS A 75 46.27 -85.02 REMARK 500 6 PRO A 80 151.44 -45.64 REMARK 500 7 ASN A 8 41.33 71.95 REMARK 500 7 GLU A 43 -74.50 -69.88 REMARK 500 7 THR A 46 -36.51 -36.45 REMARK 500 7 HIS A 61 46.00 74.16 REMARK 500 7 LYS A 71 129.95 -171.98 REMARK 500 8 LEU A 21 -31.99 -38.25 REMARK 500 8 GLU A 43 -72.15 -66.55 REMARK 500 8 ASN A 54 -70.09 -67.97 REMARK 500 8 LEU A 55 -39.09 -33.15 REMARK 500 8 LYS A 59 102.32 -44.19 REMARK 500 8 HIS A 61 48.90 73.99 REMARK 500 8 SER A 77 43.25 -91.74 REMARK 500 9 PRO A 10 -165.19 -79.12 REMARK 500 9 GLN A 16 -71.76 -71.85 REMARK 500 9 ASN A 36 24.96 48.65 REMARK 500 9 GLU A 43 -75.05 -64.42 REMARK 500 9 ASN A 54 -72.05 -63.37 REMARK 500 9 LEU A 55 -39.21 -33.59 REMARK 500 9 HIS A 61 39.45 71.35 REMARK 500 9 ILE A 65 172.75 -58.20 REMARK 500 9 SER A 70 -62.92 -102.40 REMARK 500 9 PRO A 80 171.47 -45.56 REMARK 500 10 SER A -2 96.96 -67.44 REMARK 500 10 GLU A 43 -75.03 -71.28 REMARK 500 10 ASN A 54 -73.08 -55.23 REMARK 500 10 LEU A 55 -33.55 -34.45 REMARK 500 11 MET A 1 170.64 -50.22 REMARK 500 11 CYS A 31 106.52 -161.51 REMARK 500 11 GLU A 43 -74.91 -66.03 REMARK 500 11 THR A 46 -31.23 -39.34 REMARK 500 11 HIS A 61 46.34 74.59 REMARK 500 11 ASN A 64 75.31 -107.20 REMARK 500 11 SER A 70 41.30 -105.91 REMARK 500 12 GLU A 43 -74.92 -54.26 REMARK 500 12 THR A 46 -31.21 -36.46 REMARK 500 12 ASN A 54 -70.91 -59.33 REMARK 500 12 LEU A 55 -34.82 -34.32 REMARK 500 12 LYS A 59 105.57 -55.55 REMARK 500 12 HIS A 61 40.97 72.69 REMARK 500 12 ALA A 76 112.38 -161.61 REMARK 500 12 SER A 77 115.74 -167.22 REMARK 500 12 SER A 78 95.06 -68.63 REMARK 500 13 SER A -5 43.28 -108.00 REMARK 500 13 GLU A 43 -75.19 -70.93 REMARK 500 13 ASN A 54 -70.54 -77.17 REMARK 500 13 HIS A 56 111.65 -36.49 REMARK 500 13 HIS A 57 33.10 75.00 REMARK 500 13 LYS A 59 99.86 -57.09 REMARK 500 13 HIS A 61 42.55 73.53 REMARK 500 13 ASN A 64 78.73 -103.05 REMARK 500 13 LYS A 73 129.40 -174.08 REMARK 500 13 SER A 78 107.09 -58.80 REMARK 500 14 LYS A 35 54.98 37.43 REMARK 500 14 ASN A 54 -72.60 -76.15 REMARK 500 14 HIS A 56 125.47 -35.53 REMARK 500 14 HIS A 61 43.91 72.65 REMARK 500 14 ASN A 64 71.40 -102.47 REMARK 500 14 SER A 70 95.34 -68.66 REMARK 500 15 SER A -4 -73.18 -95.54 REMARK 500 15 ASN A 54 -70.69 -72.26 REMARK 500 15 LYS A 59 82.69 -63.40 REMARK 500 15 HIS A 61 27.95 45.57 REMARK 500 15 SER A 70 -72.25 -75.75 REMARK 500 15 ASN A 72 75.77 -100.97 REMARK 500 15 PRO A 80 20.17 -79.19 REMARK 500 16 LEU A 21 -36.96 -38.44 REMARK 500 16 GLU A 43 -75.09 -71.18 REMARK 500 16 ASN A 54 -71.93 -75.83 REMARK 500 16 LYS A 59 99.97 -53.73 REMARK 500 16 HIS A 61 53.70 72.78 REMARK 500 16 SER A 70 151.77 -48.19 REMARK 500 16 SER A 77 98.41 -66.40 REMARK 500 16 SER A 82 106.16 -44.57 REMARK 500 17 GLU A 15 -38.81 -35.10 REMARK 500 17 LYS A 45 -70.88 -60.22 REMARK 500 17 ASN A 54 -71.21 -78.66 REMARK 500 17 HIS A 56 124.41 -39.82 REMARK 500 17 HIS A 61 44.82 72.14 REMARK 500 17 ILE A 65 178.76 -58.02 REMARK 500 17 LYS A 71 160.42 -40.57 REMARK 500 17 LYS A 75 93.93 -52.99 REMARK 500 18 SER A -1 172.04 -53.41 REMARK 500 18 GLU A 43 -74.97 -69.86 REMARK 500 18 ASN A 54 -71.30 -62.48 REMARK 500 18 LEU A 55 -36.10 -33.25 REMARK 500 18 SER A 77 -51.22 -129.91 REMARK 500 18 SER A 78 45.59 38.20 REMARK 500 19 PRO A 10 -167.93 -77.84 REMARK 500 19 GLU A 43 -74.93 -68.83 REMARK 500 19 ASN A 54 -72.23 -71.12 REMARK 500 19 HIS A 56 117.03 -34.44 REMARK 500 19 HIS A 57 34.10 70.59 REMARK 500 19 HIS A 61 50.72 72.12 REMARK 500 19 LYS A 75 158.52 -42.97 REMARK 500 20 SER A -5 42.86 -90.37 REMARK 500 20 ALA A 13 143.01 -35.92 REMARK 500 20 GLU A 15 -37.33 -35.70 REMARK 500 20 ASN A 36 24.99 47.44 REMARK 500 20 GLU A 43 -74.86 -67.00 REMARK 500 20 HIS A 56 118.32 -36.88 REMARK 500 20 HIS A 61 43.95 72.64 REMARK 500 20 ASN A 64 75.99 -106.15 REMARK 500 20 ALA A 69 86.50 -62.61 REMARK 500 20 SER A 70 175.53 -47.50 REMARK 500 20 ASN A 72 -46.40 -130.36 REMARK 500 REMARK 500 REMARK: NULL
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSI002005506.3 RELATED DB: TARGETDB
DBREF 2DNQ A 1 77 UNP Q9BQ04 RBM4B_HUMAN 1 77
SEQADV 2DNQ GLY A -6 UNP Q9BQ04 CLONING ARTIFACT SEQADV 2DNQ SER A -5 UNP Q9BQ04 CLONING ARTIFACT SEQADV 2DNQ SER A -4 UNP Q9BQ04 CLONING ARTIFACT SEQADV 2DNQ GLY A -3 UNP Q9BQ04 CLONING ARTIFACT SEQADV 2DNQ SER A -2 UNP Q9BQ04 CLONING ARTIFACT SEQADV 2DNQ SER A -1 UNP Q9BQ04 CLONING ARTIFACT SEQADV 2DNQ GLY A 0 UNP Q9BQ04 CLONING ARTIFACT SEQADV 2DNQ SER A 78 UNP Q9BQ04 CLONING ARTIFACT SEQADV 2DNQ GLY A 79 UNP Q9BQ04 CLONING ARTIFACT SEQADV 2DNQ PRO A 80 UNP Q9BQ04 CLONING ARTIFACT SEQADV 2DNQ SER A 81 UNP Q9BQ04 CLONING ARTIFACT SEQADV 2DNQ SER A 82 UNP Q9BQ04 CLONING ARTIFACT SEQADV 2DNQ GLY A 83 UNP Q9BQ04 CLONING ARTIFACT
SEQRES 1 A 90 GLY SER SER GLY SER SER GLY MET VAL LYS LEU PHE ILE SEQRES 2 A 90 GLY ASN LEU PRO ARG GLU ALA THR GLU GLN GLU ILE ARG SEQRES 3 A 90 SER LEU PHE GLU GLN TYR GLY LYS VAL LEU GLU CYS ASP SEQRES 4 A 90 ILE ILE LYS ASN TYR GLY PHE VAL HIS ILE GLU ASP LYS SEQRES 5 A 90 THR ALA ALA GLU ASP ALA ILE ARG ASN LEU HIS HIS TYR SEQRES 6 A 90 LYS LEU HIS GLY VAL ASN ILE ASN VAL GLU ALA SER LYS SEQRES 7 A 90 ASN LYS SER LYS ALA SER SER GLY PRO SER SER GLY
HELIX 1 1 THR A 14 GLN A 24 1 11 HELIX 2 2 ASP A 44 HIS A 56 1 13
SHEET 1 A 4 VAL A 28 ILE A 34 0 SHEET 2 A 4 TYR A 37 ILE A 42 -1 O HIS A 41 N LEU A 29 SHEET 3 A 4 VAL A 2 GLY A 7 -1 N ILE A 6 O GLY A 38 SHEET 4 A 4 ASN A 66 GLU A 68 -1 O ASN A 66 N GLY A 7
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000