10 20 30 40 50 60 70 80 2DNO - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER RNA BINDING PROTEIN 26-APR-06 2DNO
TITLE SOLUTION STRUCTURE OF RNA BINDING DOMAIN IN TRINUCLEOTIDE TITLE 2 REPEAT CONTAINING 4 VARIANT
COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRINUCLEOTIDE REPEAT CONTAINING 4 VARIANT; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RNA RECOGNITION MOTIF; COMPND 5 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: CELL FREE SYNTHESIS; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P051017-05; SOURCE 8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS
KEYWDS RRM DOMAIN, RBD, STRUCTURAL GENOMICS, NPPSFA, NATIONAL KEYWDS 2 PROJECT ON PROTEIN STRUCTURAL AND FUNCTIONAL ANALYSES, KEYWDS 3 RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI, RNA KEYWDS 4 BINDING PROTEIN
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR K.TSUDA,Y.MUTO,M.INOUE,T.KIGAWA,T.TERADA,M.SHIROUZU, AUTHOR 2 S.YOKOYAMA,RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE AUTHOR 3 (RSGI)
REVDAT 2 24-FEB-09 2DNO 1 VERSN REVDAT 1 26-OCT-06 2DNO 0
JRNL AUTH K.TSUDA,Y.MUTO,M.INOUE,T.KIGAWA,T.TERADA, JRNL AUTH 2 M.SHIROUZU,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF RNA BINDING DOMAIN IN JRNL TITL 2 TRINUCLEOTIDE REPEAT CONTAINING 4 VARIANT JRNL REF TO BE PUBLISHED JRNL REFN
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 2.0.17 REMARK 3 AUTHORS : GUNTERT,P REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 2DNO COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 10-MAY-06. REMARK 100 THE RCSB ID CODE IS RCSB025626.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.14MM 13C-15N PROTEIN, 20MM REMARK 210 D-TRIS-HCL(PH7.0), 100MM NACL, REMARK 210 1MM D-DTT,0.02% NAN3;90% H2O, REMARK 210 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY, 3D_ REMARK 210 13C-SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR 3.5, NMRPIPE REMARK 210 20030801, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.9742, CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS, REMARK 210 RESTRAINTED MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION, STRUCTURES REMARK 210 WITH THE LOWEST ENERGY, REMARK 210 STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 61 138.87 -174.04 REMARK 500 1 LYS A 72 144.55 -39.42 REMARK 500 1 PRO A 93 -15.27 -47.94 REMARK 500 1 ASP A 107 39.90 -83.53 REMARK 500 1 SER A 110 96.63 -58.97 REMARK 500 1 ASN A 129 -39.80 -34.46 REMARK 500 1 THR A 130 -71.88 -108.37 REMARK 500 1 LEU A 131 -38.98 -34.35 REMARK 500 1 SER A 134 -75.01 -91.71 REMARK 500 1 LEU A 137 148.63 -39.26 REMARK 500 1 SER A 141 -75.70 -32.01 REMARK 500 1 LEU A 144 101.51 -54.52 REMARK 500 1 PHE A 148 149.18 -39.49 REMARK 500 1 GLU A 152 131.45 -36.27 REMARK 500 2 ASP A 70 176.44 -59.40 REMARK 500 2 ARG A 71 -48.65 -131.42 REMARK 500 2 ASP A 86 -70.80 -52.89 REMARK 500 2 PRO A 93 -15.13 -47.99 REMARK 500 2 SER A 110 88.13 -58.55 REMARK 500 2 ASN A 129 -38.72 -37.05 REMARK 500 2 THR A 130 -71.42 -101.88 REMARK 500 2 HIS A 132 122.10 -34.64 REMARK 500 2 SER A 133 51.14 38.45 REMARK 500 2 SER A 134 -74.28 -95.38 REMARK 500 2 LEU A 137 143.68 -36.22 REMARK 500 2 SER A 141 -75.82 -32.38 REMARK 500 2 LYS A 153 42.15 -104.22 REMARK 500 3 SER A 61 -48.50 -134.73 REMARK 500 3 GLU A 69 43.09 -88.24 REMARK 500 3 ASP A 86 -72.57 -56.22 REMARK 500 3 PRO A 93 -15.00 -47.97 REMARK 500 3 THR A 130 -71.08 -102.73 REMARK 500 3 HIS A 132 116.95 -35.67 REMARK 500 3 SER A 133 52.89 39.33 REMARK 500 3 SER A 134 -74.09 -92.14 REMARK 500 3 LEU A 137 143.13 -37.63 REMARK 500 3 SER A 141 -75.68 -31.95 REMARK 500 3 LEU A 144 97.83 -66.67 REMARK 500 4 PRO A 93 -15.08 -48.01 REMARK 500 4 THR A 130 -73.69 -101.67 REMARK 500 4 LEU A 131 -37.26 -34.97 REMARK 500 4 SER A 134 -70.77 -96.34 REMARK 500 4 LEU A 137 141.99 -37.96 REMARK 500 4 SER A 141 -75.31 -31.89 REMARK 500 4 LEU A 144 115.06 -35.22 REMARK 500 4 SER A 155 149.66 -37.26 REMARK 500 4 SER A 158 83.83 -63.56 REMARK 500 5 SER A 61 -58.14 -129.35 REMARK 500 5 PRO A 93 -15.20 -48.00 REMARK 500 5 SER A 110 92.94 -67.98 REMARK 500 5 ASN A 129 -38.50 -36.39 REMARK 500 5 THR A 130 -72.29 -105.70 REMARK 500 5 LEU A 131 -35.60 -34.24 REMARK 500 5 SER A 134 -74.23 -70.46 REMARK 500 5 LEU A 137 143.93 -36.30 REMARK 500 5 SER A 141 -75.56 -31.94 REMARK 500 5 LEU A 144 89.13 -61.82 REMARK 500 5 PHE A 148 158.06 -40.02 REMARK 500 6 SER A 66 78.98 -118.77 REMARK 500 6 ASP A 84 -29.57 -36.88 REMARK 500 6 PRO A 93 -15.06 -48.01 REMARK 500 6 SER A 110 93.19 -59.06 REMARK 500 6 LYS A 111 -33.16 -38.87 REMARK 500 6 THR A 130 -72.32 -100.51 REMARK 500 6 HIS A 132 126.37 -35.61 REMARK 500 6 SER A 133 53.18 34.59 REMARK 500 6 SER A 134 -74.68 -95.86 REMARK 500 6 LEU A 137 142.26 -39.38 REMARK 500 6 SER A 141 -75.31 -32.06 REMARK 500 6 LEU A 144 122.05 -39.55 REMARK 500 6 SER A 159 42.02 -97.78 REMARK 500 7 ARG A 67 -61.29 -93.69 REMARK 500 7 ASP A 86 -70.28 -52.85 REMARK 500 7 PRO A 93 -15.16 -47.94 REMARK 500 7 ALA A 122 -71.41 -47.16 REMARK 500 7 THR A 130 -74.35 -96.52 REMARK 500 7 HIS A 132 117.59 -37.51 REMARK 500 7 SER A 134 -75.07 -95.94 REMARK 500 7 LEU A 137 152.57 -46.65 REMARK 500 7 SER A 141 -76.06 -32.39 REMARK 500 7 THR A 151 -51.47 -132.84 REMARK 500 7 GLU A 152 94.90 -54.21 REMARK 500 7 GLU A 154 135.57 -174.98 REMARK 500 7 SER A 155 154.17 -41.51 REMARK 500 8 PRO A 93 -14.86 -47.96 REMARK 500 8 THR A 130 -68.65 -109.63 REMARK 500 8 HIS A 132 108.84 -54.03 REMARK 500 8 SER A 134 -74.38 -99.87 REMARK 500 8 LEU A 137 152.92 -35.12 REMARK 500 8 SER A 141 -76.07 -32.39 REMARK 500 8 LEU A 144 108.01 -54.57 REMARK 500 8 PHE A 148 145.24 -38.93 REMARK 500 9 ASP A 84 -37.72 -36.56 REMARK 500 9 PRO A 93 -14.68 -47.94 REMARK 500 9 SER A 110 97.28 -65.31 REMARK 500 9 ALA A 126 -71.02 -40.25 REMARK 500 9 THR A 130 -66.00 -108.28 REMARK 500 9 SER A 133 53.60 36.87 REMARK 500 9 SER A 134 -69.70 -99.95 REMARK 500 9 SER A 141 -75.83 -32.40 REMARK 500 10 GLU A 69 -63.96 -96.37 REMARK 500 10 LYS A 72 138.72 -35.76 REMARK 500 10 ASP A 84 -28.65 -38.92 REMARK 500 10 PRO A 93 -15.30 -47.96 REMARK 500 10 SER A 110 98.77 -54.80 REMARK 500 10 THR A 130 -69.99 -107.57 REMARK 500 10 SER A 134 -75.05 -96.46 REMARK 500 10 LEU A 137 152.27 -44.60 REMARK 500 10 SER A 141 -76.00 -32.40 REMARK 500 10 ASP A 150 51.86 35.45 REMARK 500 11 ASP A 70 135.86 -34.51 REMARK 500 11 PRO A 93 -14.94 -48.02 REMARK 500 11 ASP A 107 40.10 -86.08 REMARK 500 11 SER A 110 96.18 -69.02 REMARK 500 11 ASN A 129 -38.71 -35.24 REMARK 500 11 THR A 130 -70.26 -107.20 REMARK 500 11 SER A 134 -74.92 -99.86 REMARK 500 11 SER A 141 -75.19 -31.42 REMARK 500 11 LEU A 144 106.20 -35.02 REMARK 500 11 GLU A 152 42.04 34.62 REMARK 500 11 PRO A 157 36.02 -79.31 REMARK 500 12 ASP A 70 111.83 -162.80 REMARK 500 12 LYS A 72 142.78 -36.56 REMARK 500 12 PRO A 93 -14.84 -47.97 REMARK 500 12 CYS A 113 146.22 -170.93 REMARK 500 12 ALA A 122 -72.71 -43.71 REMARK 500 12 ASN A 129 -39.25 -34.47 REMARK 500 12 THR A 130 -72.96 -107.54 REMARK 500 12 LEU A 131 -39.08 -34.38 REMARK 500 12 SER A 134 -74.74 -99.96 REMARK 500 12 LEU A 137 140.90 -34.84 REMARK 500 12 SER A 141 -75.28 -32.17 REMARK 500 12 PHE A 148 162.23 -42.03 REMARK 500 12 THR A 151 148.48 -35.42 REMARK 500 13 GLN A 82 154.03 -45.83 REMARK 500 13 PRO A 93 -14.87 -47.95 REMARK 500 13 THR A 130 -73.83 -100.15 REMARK 500 13 HIS A 132 110.34 -35.99 REMARK 500 13 SER A 134 -75.08 -98.93 REMARK 500 13 LEU A 137 152.58 -34.91 REMARK 500 13 SER A 141 -75.02 -31.34 REMARK 500 13 PHE A 148 150.03 -49.05 REMARK 500 14 SER A 63 172.72 -47.39 REMARK 500 14 ASP A 86 -73.12 -62.27 REMARK 500 14 PRO A 93 -14.87 -47.98 REMARK 500 14 THR A 130 -71.25 -105.35 REMARK 500 14 SER A 134 -75.03 -98.51 REMARK 500 14 SER A 141 -74.84 -31.23 REMARK 500 14 PHE A 148 152.69 -37.34 REMARK 500 14 ASP A 150 115.78 -162.63 REMARK 500 15 ASP A 84 -39.75 -36.77 REMARK 500 15 PRO A 93 -14.50 -47.97 REMARK 500 15 CYS A 100 115.45 -170.62 REMARK 500 15 PRO A 106 155.76 -45.11 REMARK 500 15 ASN A 129 -38.81 -34.47 REMARK 500 15 THR A 130 -71.60 -102.49 REMARK 500 15 SER A 134 -73.47 -96.65 REMARK 500 15 LEU A 137 153.40 -48.55 REMARK 500 15 SER A 141 -76.16 -32.72 REMARK 500 16 GLU A 69 59.93 -119.08 REMARK 500 16 PRO A 93 -14.71 -48.00 REMARK 500 16 SER A 110 96.46 -60.93 REMARK 500 16 HIS A 132 126.64 -36.27 REMARK 500 16 SER A 133 40.76 33.53 REMARK 500 16 SER A 134 -72.87 -100.19 REMARK 500 16 SER A 141 -75.44 -32.22 REMARK 500 16 ASP A 150 38.92 -88.24 REMARK 500 17 ARG A 67 42.96 70.57 REMARK 500 17 GLU A 69 45.68 38.82 REMARK 500 17 LYS A 72 152.21 -36.73 REMARK 500 17 PRO A 93 -14.64 -47.97 REMARK 500 17 SER A 110 96.27 -60.38 REMARK 500 17 ASN A 129 -39.01 -39.80 REMARK 500 17 THR A 130 -72.92 -101.81 REMARK 500 17 SER A 134 -73.45 -99.10 REMARK 500 17 LEU A 137 152.34 -40.47 REMARK 500 17 SER A 141 -75.95 -32.44 REMARK 500 17 SER A 143 -177.17 -62.29 REMARK 500 18 ASP A 70 128.26 -172.56 REMARK 500 18 GLN A 82 151.01 -45.48 REMARK 500 18 ASP A 86 -74.69 -58.17 REMARK 500 18 PRO A 93 -14.50 -47.91 REMARK 500 18 SER A 110 93.97 -60.10 REMARK 500 18 THR A 130 -71.87 -104.86 REMARK 500 18 HIS A 132 107.40 -35.18 REMARK 500 18 SER A 134 -74.98 -99.46 REMARK 500 18 LEU A 137 141.85 -36.92 REMARK 500 18 SER A 141 -75.65 -32.40 REMARK 500 18 LEU A 144 108.24 -59.83 REMARK 500 18 GLU A 154 101.26 -40.62 REMARK 500 19 PRO A 93 -14.53 -47.96 REMARK 500 19 SER A 110 93.02 -63.87 REMARK 500 19 THR A 130 -67.77 -105.86 REMARK 500 19 SER A 134 -74.77 -95.43 REMARK 500 19 LEU A 137 142.71 -36.33 REMARK 500 19 SER A 141 -75.53 -31.99 REMARK 500 19 SER A 143 -179.81 -62.72 REMARK 500 19 LEU A 144 97.51 -65.65 REMARK 500 19 ALA A 149 163.42 -49.13 REMARK 500 19 ASP A 150 -62.50 -107.61 REMARK 500 19 SER A 158 -50.45 -124.71 REMARK 500 20 ARG A 71 -53.04 -127.43 REMARK 500 20 LYS A 72 137.51 -34.90 REMARK 500 20 PRO A 93 -14.52 -47.94 REMARK 500 20 CYS A 100 136.94 -171.92 REMARK 500 20 SER A 110 99.77 -67.32 REMARK 500 20 ASN A 129 -39.88 -38.87 REMARK 500 20 THR A 130 -69.46 -108.13 REMARK 500 20 HIS A 132 116.51 -39.79 REMARK 500 20 SER A 134 -74.49 -99.58 REMARK 500 20 SER A 141 -75.67 -32.11 REMARK 500 20 LEU A 144 93.86 -65.77 REMARK 500 REMARK 500 REMARK: NULL
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSK003001111.1 RELATED DB: TARGETDB
DBREF 2DNO A 66 154 UNP Q5SZQ7 Q5SZQ7_HUMAN 88 180
SEQADV 2DNO GLY A 59 UNP Q5SZQ7 CLONING ARTIFACT SEQADV 2DNO SER A 60 UNP Q5SZQ7 CLONING ARTIFACT SEQADV 2DNO SER A 61 UNP Q5SZQ7 CLONING ARTIFACT SEQADV 2DNO GLY A 62 UNP Q5SZQ7 CLONING ARTIFACT SEQADV 2DNO SER A 63 UNP Q5SZQ7 CLONING ARTIFACT SEQADV 2DNO SER A 64 UNP Q5SZQ7 CLONING ARTIFACT SEQADV 2DNO GLY A 65 UNP Q5SZQ7 CLONING ARTIFACT SEQADV 2DNO SER A 155 UNP Q5SZQ7 CLONING ARTIFACT SEQADV 2DNO GLY A 156 UNP Q5SZQ7 CLONING ARTIFACT SEQADV 2DNO PRO A 157 UNP Q5SZQ7 CLONING ARTIFACT SEQADV 2DNO SER A 158 UNP Q5SZQ7 CLONING ARTIFACT SEQADV 2DNO SER A 159 UNP Q5SZQ7 CLONING ARTIFACT SEQADV 2DNO GLY A 160 UNP Q5SZQ7 CLONING ARTIFACT
SEQRES 1 A 102 GLY SER SER GLY SER SER GLY SER ARG GLY GLU ASP ARG SEQRES 2 A 102 LYS LEU PHE VAL GLY MET LEU GLY LYS GLN GLN THR ASP SEQRES 3 A 102 GLU ASP VAL ARG LYS MET PHE GLU PRO PHE GLY THR ILE SEQRES 4 A 102 ASP GLU CYS THR VAL LEU ARG GLY PRO ASP GLY THR SER SEQRES 5 A 102 LYS GLY CYS ALA PHE VAL LYS PHE GLN THR HIS ALA GLU SEQRES 6 A 102 ALA GLN ALA ALA ILE ASN THR LEU HIS SER SER ARG THR SEQRES 7 A 102 LEU PRO GLY ALA SER SER SER LEU VAL VAL LYS PHE ALA SEQRES 8 A 102 ASP THR GLU LYS GLU SER GLY PRO SER SER GLY
HELIX 1 1 THR A 83 GLU A 92 1 10 HELIX 2 2 PRO A 93 GLY A 95 5 3 HELIX 3 3 THR A 120 HIS A 132 1 13
SHEET 1 A 4 ILE A 97 ARG A 104 0 SHEET 2 A 4 SER A 110 PHE A 118 -1 O LYS A 117 N ASP A 98 SHEET 3 A 4 LEU A 73 GLY A 76 -1 N VAL A 75 O ALA A 114 SHEET 4 A 4 VAL A 146 PHE A 148 -1 O LYS A 147 N PHE A 74
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000