10 20 30 40 50 60 70 80 2DNM - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER RNA BINDING PROTEIN 26-APR-06 2DNM
TITLE SOLUTION STRUCTURE OF RNA BINDING DOMAIN IN SRP46 SPLICING TITLE 2 FACTOR
COMPND MOL_ID: 1; COMPND 2 MOLECULE: SRP46 SPLICING FACTOR; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RNA RECOGNITION MOTIF; COMPND 5 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SRP46; SOURCE 6 EXPRESSION_SYSTEM: CELL FREE SYNTHESIS; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: P050829-09; SOURCE 9 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS
KEYWDS RRM DOMAIN, RBD, STRUCTURAL GENOMICS, NPPSFA, NATIONAL KEYWDS 2 PROJECT ON PROTEIN STRUCTURAL AND FUNCTIONAL ANALYSES, KEYWDS 3 RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI, RNA KEYWDS 4 BINDING PROTEIN
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR K.TSUDA,Y.MUTO,M.INOUE,T.KIGAWA,T.TERADA,M.SHIROUZU, AUTHOR 2 S.YOKOYAMA,RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE AUTHOR 3 (RSGI)
REVDAT 2 24-FEB-09 2DNM 1 VERSN REVDAT 1 26-OCT-06 2DNM 0
JRNL AUTH K.TSUDA,Y.MUTO,M.INOUE,T.KIGAWA,T.TERADA, JRNL AUTH 2 M.SHIROUZU,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF RNA BINDING DOMAIN IN SRP46 JRNL TITL 2 SPLICING FACTOR JRNL REF TO BE PUBLISHED JRNL REFN
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 2.0.17 REMARK 3 AUTHORS : GUNTERT,P REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 2DNM COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 10-MAY-06. REMARK 100 THE RCSB ID CODE IS RCSB025624.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.12MM 13C-15N PROTEIN, 20MM REMARK 210 D-TRIS-HCL(PH7.0), 100MM NACL, REMARK 210 1MM D-DTT, 0.02% NAN; 90% H2O, REMARK 210 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY, 3D_ REMARK 210 13C-SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR 3.5, NMRPIPE REMARK 210 20030801, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.9742, CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS, REMARK 210 RESTRAINTED MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION, STRUCTURES REMARK 210 WITH THE LOWEST ENERGY, REMARK 210 STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 3 130.25 -37.12 REMARK 500 1 PRO A 8 37.04 -78.77 REMARK 500 1 ARG A 39 159.40 -43.58 REMARK 500 1 PRO A 46 154.44 -47.99 REMARK 500 1 PRO A 54 97.53 -47.38 REMARK 500 1 ARG A 66 -61.51 -98.73 REMARK 500 1 MET A 75 -74.58 -59.33 REMARK 500 1 ASP A 76 111.10 -34.39 REMARK 500 1 PRO A 100 101.57 -45.54 REMARK 500 2 VAL A 10 95.70 -35.58 REMARK 500 2 TYR A 37 -64.36 -106.52 REMARK 500 2 PRO A 46 155.04 -47.32 REMARK 500 2 ALA A 74 -73.33 -34.04 REMARK 500 2 ASP A 76 106.57 -35.28 REMARK 500 2 ALA A 90 120.59 -34.66 REMARK 500 2 LEU A 97 138.94 -170.96 REMARK 500 2 SER A 101 92.69 -69.24 REMARK 500 3 ILE A 14 122.07 -35.02 REMARK 500 3 THR A 25 137.85 -38.95 REMARK 500 3 TYR A 37 -60.96 -99.89 REMARK 500 3 ARG A 39 173.53 -51.88 REMARK 500 3 PRO A 46 153.53 -48.96 REMARK 500 3 GLU A 48 156.12 -44.63 REMARK 500 3 GLU A 72 -75.13 -66.82 REMARK 500 3 MET A 75 -69.31 -96.13 REMARK 500 3 ASP A 76 98.80 -34.39 REMARK 500 3 ARG A 86 79.86 -107.98 REMARK 500 3 VAL A 87 74.92 -100.36 REMARK 500 3 ARG A 94 156.13 -40.13 REMARK 500 4 ASP A 11 -71.88 -83.39 REMARK 500 4 ARG A 24 -32.20 -36.02 REMARK 500 4 ARG A 39 175.33 -59.73 REMARK 500 4 GLU A 48 158.60 -43.15 REMARK 500 4 LYS A 52 48.53 -108.65 REMARK 500 4 ARG A 55 -71.29 -41.16 REMARK 500 4 GLU A 72 -70.12 -59.55 REMARK 500 4 MET A 75 -70.03 -75.37 REMARK 500 4 ASP A 76 99.55 -34.51 REMARK 500 4 ALA A 90 -73.77 -64.47 REMARK 500 4 PRO A 100 41.19 -77.01 REMARK 500 4 SER A 101 102.10 -43.90 REMARK 500 5 SER A 3 151.32 -35.27 REMARK 500 5 PRO A 54 98.33 -46.95 REMARK 500 5 GLU A 72 -74.15 -63.84 REMARK 500 5 ALA A 74 -72.01 -50.98 REMARK 500 5 ASP A 76 117.91 -34.43 REMARK 500 5 ASP A 96 82.85 -69.83 REMARK 500 5 SER A 98 108.87 -45.92 REMARK 500 6 SER A 3 -55.74 -123.36 REMARK 500 6 SER A 6 -61.57 -124.07 REMARK 500 6 ASP A 11 124.05 -172.66 REMARK 500 6 ILE A 14 136.25 -34.32 REMARK 500 6 PRO A 49 -19.88 -48.49 REMARK 500 6 HIS A 50 -70.94 -103.08 REMARK 500 6 ARG A 55 -29.06 -37.33 REMARK 500 6 GLU A 72 -73.38 -54.51 REMARK 500 6 MET A 75 -72.93 -99.82 REMARK 500 6 ASP A 76 99.18 -34.93 REMARK 500 6 TYR A 92 48.96 -99.04 REMARK 500 6 LEU A 97 170.47 -50.56 REMARK 500 7 PRO A 8 158.65 -45.61 REMARK 500 7 THR A 25 152.47 -37.66 REMARK 500 7 HIS A 50 -66.27 -92.51 REMARK 500 7 MET A 75 -74.95 -81.63 REMARK 500 7 ASP A 76 103.86 -34.57 REMARK 500 7 GLU A 84 77.72 -106.67 REMARK 500 7 SER A 101 108.80 -52.96 REMARK 500 8 MET A 13 -39.18 -133.16 REMARK 500 8 ARG A 24 -37.37 -39.75 REMARK 500 8 TYR A 37 -69.04 -101.56 REMARK 500 8 GLU A 72 -74.95 -62.18 REMARK 500 8 ASP A 76 112.03 -34.41 REMARK 500 8 PRO A 100 155.53 -45.60 REMARK 500 9 SER A 3 149.79 -170.77 REMARK 500 9 PRO A 8 46.59 -74.67 REMARK 500 9 VAL A 10 91.44 -68.91 REMARK 500 9 ILE A 14 132.95 -34.76 REMARK 500 9 THR A 25 146.94 -38.17 REMARK 500 9 HIS A 50 -56.72 -134.30 REMARK 500 9 LYS A 52 36.08 -83.45 REMARK 500 9 GLU A 72 -74.95 -57.44 REMARK 500 9 MET A 75 -71.19 -77.72 REMARK 500 9 ASP A 76 101.12 -34.30 REMARK 500 9 ALA A 90 135.24 -35.73 REMARK 500 9 ARG A 91 79.70 -105.41 REMARK 500 10 SER A 5 -64.86 -96.34 REMARK 500 10 SER A 6 -66.85 -108.42 REMARK 500 10 PRO A 8 155.29 -44.19 REMARK 500 10 ASP A 9 137.40 -34.45 REMARK 500 10 ASP A 42 141.37 -173.38 REMARK 500 10 ARG A 55 -70.59 -43.67 REMARK 500 10 GLU A 72 -73.78 -53.21 REMARK 500 10 ASP A 76 116.72 -34.27 REMARK 500 10 LEU A 85 95.71 -47.50 REMARK 500 10 ARG A 86 91.77 -62.33 REMARK 500 11 PRO A 8 166.42 -44.28 REMARK 500 11 ILE A 14 135.17 -39.66 REMARK 500 11 THR A 22 159.58 -48.89 REMARK 500 11 VAL A 40 106.08 -53.53 REMARK 500 11 ALA A 73 -39.43 -39.56 REMARK 500 11 ASP A 76 113.82 -34.39 REMARK 500 11 PRO A 100 171.79 -45.51 REMARK 500 12 PRO A 8 39.78 -77.69 REMARK 500 12 THR A 25 145.55 -37.20 REMARK 500 12 ASP A 28 -71.30 -68.36 REMARK 500 12 TYR A 37 -64.53 -105.04 REMARK 500 12 PRO A 46 160.63 -44.45 REMARK 500 12 PRO A 49 -19.66 -48.65 REMARK 500 12 ALA A 73 -33.13 -37.25 REMARK 500 12 ALA A 74 -70.41 -90.28 REMARK 500 12 MET A 75 -74.63 -44.08 REMARK 500 12 SER A 102 42.11 -92.31 REMARK 500 13 SER A 5 111.86 -169.02 REMARK 500 13 VAL A 10 91.10 -50.98 REMARK 500 13 MET A 13 162.00 -43.99 REMARK 500 13 THR A 25 123.55 -35.63 REMARK 500 13 TYR A 37 -66.73 -121.14 REMARK 500 13 HIS A 50 -65.80 -98.65 REMARK 500 13 LYS A 52 40.89 -82.50 REMARK 500 13 PRO A 54 160.80 -45.60 REMARK 500 13 ASP A 76 95.25 -34.42 REMARK 500 14 ARG A 24 -38.30 -37.00 REMARK 500 14 TYR A 37 -61.95 -102.70 REMARK 500 14 ARG A 39 93.62 -40.83 REMARK 500 14 VAL A 40 124.81 -36.33 REMARK 500 14 ALA A 73 -28.18 -37.32 REMARK 500 14 ALA A 74 -72.01 -92.10 REMARK 500 14 ASP A 76 113.34 -33.78 REMARK 500 14 ASP A 96 -74.72 -97.13 REMARK 500 15 SER A 3 171.47 -55.95 REMARK 500 15 SER A 6 47.51 34.83 REMARK 500 15 PRO A 8 49.40 -74.78 REMARK 500 15 VAL A 10 74.72 -112.63 REMARK 500 15 MET A 13 -71.36 -75.02 REMARK 500 15 THR A 22 151.90 -45.71 REMARK 500 15 THR A 25 140.12 -34.77 REMARK 500 15 LYS A 52 41.15 -81.47 REMARK 500 15 ARG A 55 -36.67 -34.69 REMARK 500 15 GLU A 72 -74.87 -64.94 REMARK 500 15 ASP A 76 99.33 -34.15 REMARK 500 15 LEU A 85 119.95 -36.36 REMARK 500 16 SER A 2 137.46 -39.64 REMARK 500 16 MET A 13 -53.70 -122.28 REMARK 500 16 THR A 22 163.54 -44.10 REMARK 500 16 ARG A 24 -27.18 -38.24 REMARK 500 16 VAL A 40 105.59 -43.90 REMARK 500 16 PRO A 46 173.12 -45.43 REMARK 500 16 HIS A 50 -67.22 -104.66 REMARK 500 16 ARG A 66 -19.17 -48.63 REMARK 500 16 ASP A 76 115.50 -37.48 REMARK 500 16 ALA A 90 -73.56 -54.68 REMARK 500 16 ARG A 94 -49.48 -132.13 REMARK 500 17 SER A 6 42.43 -108.33 REMARK 500 17 VAL A 10 109.31 -56.21 REMARK 500 17 LEU A 30 -32.08 -39.54 REMARK 500 17 VAL A 40 99.02 -39.17 REMARK 500 17 LYS A 52 47.03 -89.34 REMARK 500 17 GLU A 72 -73.36 -69.78 REMARK 500 17 MET A 75 -74.22 -68.74 REMARK 500 17 ASP A 76 108.02 -36.51 REMARK 500 17 ASP A 81 28.41 45.33 REMARK 500 17 ALA A 90 -71.29 -51.44 REMARK 500 17 ARG A 94 126.43 -35.52 REMARK 500 17 ARG A 95 -54.26 -127.54 REMARK 500 17 ASP A 96 41.08 35.22 REMARK 500 18 MET A 13 -72.65 -74.39 REMARK 500 18 ARG A 39 -178.58 -60.43 REMARK 500 18 HIS A 50 -61.65 -109.84 REMARK 500 18 ARG A 55 -38.14 -36.14 REMARK 500 18 ALA A 74 -73.77 -67.56 REMARK 500 18 MET A 75 -72.21 -48.68 REMARK 500 18 ASP A 76 99.54 -34.39 REMARK 500 18 LEU A 85 104.34 -51.86 REMARK 500 18 ALA A 90 49.39 -85.16 REMARK 500 19 SER A 2 42.24 -90.59 REMARK 500 19 SER A 6 105.55 -58.41 REMARK 500 19 PRO A 46 156.23 -47.42 REMARK 500 19 LYS A 52 39.62 -83.05 REMARK 500 19 PRO A 54 156.32 -47.41 REMARK 500 19 ALA A 74 -70.72 -86.94 REMARK 500 19 MET A 75 -74.65 -41.98 REMARK 500 19 ASP A 76 103.19 -39.60 REMARK 500 19 VAL A 87 79.50 -101.64 REMARK 500 19 SER A 102 43.28 35.80 REMARK 500 20 THR A 25 131.49 -36.94 REMARK 500 20 PRO A 46 173.79 -44.64 REMARK 500 20 THR A 51 149.61 -175.04 REMARK 500 20 PRO A 54 174.17 -48.15 REMARK 500 20 ALA A 74 -74.67 -45.30 REMARK 500 20 MET A 75 -74.96 -42.57 REMARK 500 20 ASP A 76 110.42 -34.49 REMARK 500 20 SER A 101 109.47 -169.08 REMARK 500 REMARK 500 REMARK: NULL
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSO002000005.1 RELATED DB: TARGETDB
DBREF 2DNM A 8 97 UNP Q6PF01 Q6PF01_HUMAN 8 97
SEQADV 2DNM GLY A 1 UNP Q6PF01 CLONING ARTIFACT SEQADV 2DNM SER A 2 UNP Q6PF01 CLONING ARTIFACT SEQADV 2DNM SER A 3 UNP Q6PF01 CLONING ARTIFACT SEQADV 2DNM GLY A 4 UNP Q6PF01 CLONING ARTIFACT SEQADV 2DNM SER A 5 UNP Q6PF01 CLONING ARTIFACT SEQADV 2DNM SER A 6 UNP Q6PF01 CLONING ARTIFACT SEQADV 2DNM GLY A 7 UNP Q6PF01 CLONING ARTIFACT SEQADV 2DNM SER A 98 UNP Q6PF01 CLONING ARTIFACT SEQADV 2DNM GLY A 99 UNP Q6PF01 CLONING ARTIFACT SEQADV 2DNM PRO A 100 UNP Q6PF01 CLONING ARTIFACT SEQADV 2DNM SER A 101 UNP Q6PF01 CLONING ARTIFACT SEQADV 2DNM SER A 102 UNP Q6PF01 CLONING ARTIFACT SEQADV 2DNM GLY A 103 UNP Q6PF01 CLONING ARTIFACT
SEQRES 1 A 103 GLY SER SER GLY SER SER GLY PRO ASP VAL ASP GLY MET SEQRES 2 A 103 ILE THR LEU LYS VAL ASP ASN LEU THR TYR ARG THR SER SEQRES 3 A 103 PRO ASP SER LEU ARG ARG VAL PHE GLU LYS TYR GLY ARG SEQRES 4 A 103 VAL GLY ASP VAL TYR ILE PRO ARG GLU PRO HIS THR LYS SEQRES 5 A 103 ALA PRO ARG GLY PHE ALA PHE VAL ARG PHE HIS ASP ARG SEQRES 6 A 103 ARG ASP ALA GLN ASP ALA GLU ALA ALA MET ASP GLY ALA SEQRES 7 A 103 GLU LEU ASP GLY ARG GLU LEU ARG VAL GLN VAL ALA ARG SEQRES 8 A 103 TYR GLY ARG ARG ASP LEU SER GLY PRO SER SER GLY
HELIX 1 1 SER A 26 GLU A 35 1 10 HELIX 2 2 ARG A 66 ASP A 76 1 11
SHEET 1 A 4 VAL A 40 TYR A 44 0 SHEET 2 A 4 ALA A 58 PHE A 62 -1 O PHE A 59 N TYR A 44 SHEET 3 A 4 THR A 15 ASP A 19 -1 N LEU A 16 O VAL A 60 SHEET 4 A 4 ARG A 86 VAL A 89 -1 O GLN A 88 N LYS A 17
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000