10 20 30 40 50 60 70 80 2DNH - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER RNA BINDING PROTEIN 26-APR-06 2DNH
TITLE SOLUTION STRUCTURE OF RNA BINDING DOMAIN IN BRUNO-LIKE 5 TITLE 2 RNA BINDING PROTEIN
COMPND MOL_ID: 1; COMPND 2 MOLECULE: BRUNO-LIKE 5, RNA BINDING PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RNA RECOGNITION MOTIF; COMPND 5 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: BRUNOL5; SOURCE 6 EXPRESSION_SYSTEM: CELL FREE SYNTHESIS; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: P050725-22; SOURCE 9 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS
KEYWDS RRM DOMAIN, RBD, STRUCTURAL GENOMICS, NPPSFA, NATIONAL KEYWDS 2 PROJECT ON PROTEIN STRUCTURAL AND FUNCTIONAL ANALYSES, KEYWDS 3 RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI, RNA KEYWDS 4 BINDING PROTEIN
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR K.TSUDA,Y.MUTO,M.INOUE,T.KIGAWA,T.TERADA,M.SHIROUZU, AUTHOR 2 S.YOKOYAMA,RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE AUTHOR 3 (RSGI)
REVDAT 2 24-FEB-09 2DNH 1 VERSN REVDAT 1 26-OCT-06 2DNH 0
JRNL AUTH K.TSUDA,Y.MUTO,M.INOUE,T.KIGAWA,T.TERADA, JRNL AUTH 2 M.SHIROUZU,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF RNA BINDING DOMAIN IN JRNL TITL 2 BRUNO-LIKE 5 RNA BINDING PROTEIN JRNL REF TO BE PUBLISHED JRNL REFN
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 2.0.17 REMARK 3 AUTHORS : GUNTERT,P REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 2DNH COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 08-MAY-06. REMARK 100 THE RCSB ID CODE IS RCSB025621.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.13MM 13C-15N PROTEIN, 20MM REMARK 210 D-TRIS-HCL(PH7.0), 100MM NACL, REMARK 210 1MM D-DTT, 0.02% NAN3, 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY, 3D_ REMARK 210 13C-SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 700 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR 3.5, NMRPIPE REMARK 210 20030801, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.9742, CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS, REMARK 210 RESTRAINTED MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION,STRUCTURES REMARK 210 WITH THE LOWEST ENERGY, REMARK 210 STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 120 107.81 -39.71 REMARK 500 1 ARG A 134 30.35 -88.86 REMARK 500 1 PRO A 156 -17.18 -47.89 REMARK 500 1 ALA A 190 -37.17 -39.73 REMARK 500 1 ILE A 191 -72.91 -63.90 REMARK 500 1 MET A 200 138.45 -39.43 REMARK 500 1 THR A 214 -73.82 -59.04 REMARK 500 2 ARG A 132 70.09 -113.49 REMARK 500 2 LYS A 143 45.43 -78.45 REMARK 500 2 GLN A 144 -34.01 -132.11 REMARK 500 2 PRO A 156 -17.49 -47.95 REMARK 500 2 SER A 172 102.70 -35.66 REMARK 500 2 ALA A 190 -27.59 -38.65 REMARK 500 2 ILE A 191 -71.07 -74.30 REMARK 500 2 ASP A 213 141.48 -39.28 REMARK 500 2 ASP A 215 119.72 -168.39 REMARK 500 2 SER A 218 158.28 -41.48 REMARK 500 3 PRO A 156 -16.77 -47.92 REMARK 500 3 LEU A 207 151.57 -40.04 REMARK 500 4 PRO A 156 -17.08 -47.97 REMARK 500 4 ALA A 190 -38.77 -35.56 REMARK 500 4 ILE A 191 -73.00 -62.74 REMARK 500 4 PRO A 201 153.03 -48.62 REMARK 500 4 PHE A 211 157.36 -47.68 REMARK 500 4 ASP A 213 128.52 -36.94 REMARK 500 4 PRO A 220 98.67 -45.22 REMARK 500 4 SER A 221 126.22 -174.40 REMARK 500 5 SER A 124 42.31 -99.52 REMARK 500 5 GLU A 127 43.15 -83.14 REMARK 500 5 ASP A 133 117.37 -162.29 REMARK 500 5 LYS A 143 44.65 -79.49 REMARK 500 5 GLN A 144 -40.75 -133.01 REMARK 500 5 SER A 173 135.21 -34.62 REMARK 500 5 ALA A 190 -33.58 -35.57 REMARK 500 5 ILE A 191 -70.37 -66.62 REMARK 500 5 PRO A 201 153.05 -47.97 REMARK 500 5 LEU A 207 154.32 -42.31 REMARK 500 6 SER A 128 97.89 -62.59 REMARK 500 6 ASP A 133 159.51 -48.83 REMARK 500 6 PRO A 156 -17.13 -47.98 REMARK 500 6 ASP A 170 42.11 -82.74 REMARK 500 6 SER A 173 117.35 -35.28 REMARK 500 6 ILE A 191 -71.52 -65.89 REMARK 500 6 MET A 200 139.13 -39.92 REMARK 500 6 PRO A 201 150.49 -48.21 REMARK 500 6 PHE A 211 153.28 -47.39 REMARK 500 6 PRO A 220 169.38 -45.61 REMARK 500 7 SER A 120 148.22 -171.63 REMARK 500 7 SER A 121 118.99 -162.16 REMARK 500 7 GLU A 127 82.10 -65.66 REMARK 500 7 LYS A 143 42.67 -81.95 REMARK 500 7 GLN A 144 -35.02 -133.22 REMARK 500 7 PRO A 156 -17.02 -47.96 REMARK 500 7 ASP A 170 40.35 -88.58 REMARK 500 7 SER A 173 137.13 -35.46 REMARK 500 7 ILE A 191 -72.21 -60.99 REMARK 500 7 ASP A 213 146.35 -172.95 REMARK 500 8 PRO A 156 -18.85 -47.99 REMARK 500 8 ASP A 161 -61.62 -103.13 REMARK 500 8 ILE A 191 -71.51 -69.44 REMARK 500 8 MET A 200 139.20 -39.19 REMARK 500 8 PHE A 211 154.54 -45.87 REMARK 500 9 GLU A 127 166.21 -45.21 REMARK 500 9 LYS A 143 42.24 -90.38 REMARK 500 9 GLN A 144 -35.34 -134.40 REMARK 500 9 PRO A 156 -17.18 -47.99 REMARK 500 9 ASP A 170 41.12 -92.69 REMARK 500 9 SER A 173 128.02 -34.53 REMARK 500 9 ILE A 191 -71.67 -69.51 REMARK 500 9 MET A 200 137.85 -37.03 REMARK 500 9 PRO A 201 154.29 -47.21 REMARK 500 9 ASP A 213 101.70 -58.44 REMARK 500 9 ASP A 215 110.99 -165.72 REMARK 500 9 PRO A 220 42.27 -76.91 REMARK 500 9 SER A 221 40.44 37.17 REMARK 500 10 ASP A 133 39.34 39.23 REMARK 500 10 ARG A 134 45.96 -79.50 REMARK 500 10 LYS A 143 47.60 -77.61 REMARK 500 10 GLN A 144 -34.10 -133.77 REMARK 500 10 PRO A 156 -18.38 -47.94 REMARK 500 10 ALA A 190 -35.58 -39.52 REMARK 500 10 ILE A 191 -70.30 -67.15 REMARK 500 10 PRO A 201 151.14 -48.67 REMARK 500 10 ASP A 215 -60.36 -107.76 REMARK 500 11 SER A 128 92.96 -69.15 REMARK 500 11 ARG A 132 79.37 -112.75 REMARK 500 11 LYS A 143 41.91 -83.73 REMARK 500 11 PRO A 156 -17.13 -48.02 REMARK 500 11 ASP A 170 43.73 -86.87 REMARK 500 11 ILE A 191 -72.58 -68.43 REMARK 500 11 ASP A 213 86.54 -61.31 REMARK 500 11 THR A 214 44.91 -89.57 REMARK 500 12 SER A 121 -61.58 -93.00 REMARK 500 12 ARG A 132 -53.35 -122.07 REMARK 500 12 ASP A 133 110.77 -34.69 REMARK 500 12 ARG A 134 32.67 -84.33 REMARK 500 12 PRO A 156 -17.19 -47.94 REMARK 500 12 SER A 172 -75.02 -124.57 REMARK 500 12 ILE A 191 -71.06 -66.34 REMARK 500 12 PHE A 211 155.93 -41.69 REMARK 500 12 ASP A 213 53.99 70.50 REMARK 500 13 SER A 124 113.15 -171.75 REMARK 500 13 LYS A 143 46.90 -77.32 REMARK 500 13 GLN A 144 -34.55 -133.81 REMARK 500 13 PRO A 156 -18.46 -48.00 REMARK 500 13 ASP A 170 70.94 -107.05 REMARK 500 13 ILE A 191 -71.31 -67.50 REMARK 500 13 MET A 200 137.84 -37.72 REMARK 500 13 PRO A 201 153.66 -48.77 REMARK 500 13 PHE A 211 163.08 -46.50 REMARK 500 13 PRO A 220 171.12 -45.69 REMARK 500 14 SER A 120 150.92 -44.09 REMARK 500 14 SER A 123 167.12 -46.57 REMARK 500 14 LYS A 143 37.85 -84.14 REMARK 500 14 PRO A 156 -16.95 -48.00 REMARK 500 14 MET A 200 138.42 -38.36 REMARK 500 14 SER A 221 84.04 -69.00 REMARK 500 15 ARG A 134 44.34 -84.12 REMARK 500 15 PRO A 156 -17.13 -47.97 REMARK 500 15 ASP A 170 38.27 -84.46 REMARK 500 15 SER A 172 -74.78 -120.51 REMARK 500 15 MET A 200 137.92 -39.93 REMARK 500 15 ASP A 213 43.77 -95.02 REMARK 500 15 THR A 214 42.11 -85.22 REMARK 500 15 LYS A 216 42.26 -106.40 REMARK 500 15 PRO A 220 42.66 -77.04 REMARK 500 16 LYS A 143 43.12 -81.98 REMARK 500 16 GLN A 144 -37.84 -134.38 REMARK 500 16 PRO A 156 -16.67 -47.92 REMARK 500 16 ASP A 170 39.03 -91.25 REMARK 500 16 SER A 173 133.09 -35.03 REMARK 500 16 ALA A 190 -38.19 -39.40 REMARK 500 16 ILE A 191 -71.22 -61.63 REMARK 500 16 MET A 200 138.10 -34.58 REMARK 500 16 PRO A 201 151.58 -49.63 REMARK 500 16 SER A 221 102.64 -48.30 REMARK 500 17 PRO A 156 -17.13 -48.01 REMARK 500 17 ASP A 161 -62.30 -95.13 REMARK 500 17 ASP A 170 63.37 -101.10 REMARK 500 17 ILE A 191 -74.08 -57.36 REMARK 500 17 MET A 200 154.86 -39.62 REMARK 500 17 ASP A 213 154.54 -38.02 REMARK 500 17 SER A 221 90.38 -68.09 REMARK 500 18 SER A 123 41.36 -85.02 REMARK 500 18 SER A 126 54.74 -112.93 REMARK 500 18 GLU A 127 49.38 -91.09 REMARK 500 18 LYS A 143 39.93 -82.48 REMARK 500 18 PRO A 156 -17.28 -47.97 REMARK 500 18 ILE A 191 -71.83 -60.04 REMARK 500 18 MET A 200 155.25 -37.11 REMARK 500 18 SER A 221 170.51 -52.50 REMARK 500 19 SER A 124 152.44 -39.84 REMARK 500 19 ARG A 134 32.71 -95.16 REMARK 500 19 LYS A 143 40.69 -82.37 REMARK 500 19 PRO A 156 -17.27 -47.99 REMARK 500 19 ASP A 170 41.82 -101.74 REMARK 500 19 ILE A 191 -73.50 -61.37 REMARK 500 19 MET A 200 154.56 -36.10 REMARK 500 19 ASP A 213 103.97 -46.03 REMARK 500 20 GLN A 144 43.71 -109.31 REMARK 500 20 PRO A 156 -16.75 -48.03 REMARK 500 20 SER A 173 141.43 -35.05 REMARK 500 20 ILE A 191 -72.41 -70.71 REMARK 500 20 MET A 200 156.01 -37.03 REMARK 500 20 LEU A 207 151.40 -45.68 REMARK 500 20 ASP A 213 117.34 -36.81 REMARK 500 20 SER A 221 121.89 -39.95 REMARK 500 REMARK 500 REMARK: NULL
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSK003000660.1 RELATED DB: TARGETDB
DBREF 2DNH A 126 217 UNP Q86VW6 Q86VW6_HUMAN 126 217
SEQADV 2DNH GLY A 119 UNP Q86VW6 CLONING ARTIFACT SEQADV 2DNH SER A 120 UNP Q86VW6 CLONING ARTIFACT SEQADV 2DNH SER A 121 UNP Q86VW6 CLONING ARTIFACT SEQADV 2DNH GLY A 122 UNP Q86VW6 CLONING ARTIFACT SEQADV 2DNH SER A 123 UNP Q86VW6 CLONING ARTIFACT SEQADV 2DNH SER A 124 UNP Q86VW6 CLONING ARTIFACT SEQADV 2DNH GLY A 125 UNP Q86VW6 CLONING ARTIFACT SEQADV 2DNH SER A 218 UNP Q86VW6 CLONING ARTIFACT SEQADV 2DNH GLY A 219 UNP Q86VW6 CLONING ARTIFACT SEQADV 2DNH PRO A 220 UNP Q86VW6 CLONING ARTIFACT SEQADV 2DNH SER A 221 UNP Q86VW6 CLONING ARTIFACT SEQADV 2DNH SER A 222 UNP Q86VW6 CLONING ARTIFACT SEQADV 2DNH GLY A 223 UNP Q86VW6 CLONING ARTIFACT
SEQRES 1 A 105 GLY SER SER GLY SER SER GLY SER GLU SER ARG GLY GLY SEQRES 2 A 105 ARG ASP ARG LYS LEU PHE VAL GLY MET LEU ASN LYS GLN SEQRES 3 A 105 GLN SER GLU GLU ASP VAL LEU ARG LEU PHE GLN PRO PHE SEQRES 4 A 105 GLY VAL ILE ASP GLU CYS THR VAL LEU ARG GLY PRO ASP SEQRES 5 A 105 GLY SER SER LYS GLY CYS ALA PHE VAL LYS PHE SER SER SEQRES 6 A 105 HIS THR GLU ALA GLN ALA ALA ILE HIS ALA LEU HIS GLY SEQRES 7 A 105 SER GLN THR MET PRO GLY ALA SER SER SER LEU VAL VAL SEQRES 8 A 105 LYS PHE ALA ASP THR ASP LYS GLU SER GLY PRO SER SER SEQRES 9 A 105 GLY
HELIX 1 1 SER A 146 GLN A 155 1 10 HELIX 2 2 SER A 183 HIS A 195 1 13
SHEET 1 A 4 ILE A 160 ARG A 167 0 SHEET 2 A 4 SER A 173 PHE A 181 -1 O PHE A 178 N THR A 164 SHEET 3 A 4 LYS A 135 GLY A 139 -1 N VAL A 138 O ALA A 177 SHEET 4 A 4 VAL A 208 PHE A 211 -1 O LYS A 210 N PHE A 137
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000