10 20 30 40 50 60 70 80 2DN7 - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER SIGNALING PROTEIN, HYDROLASE 25-APR-06 2DN7
TITLE SOLUTION STRUCTURES OF THE 6TH FN3 DOMAIN OF HUMAN RECEPTOR- TITLE 2 TYPE TYROSINE-PROTEIN PHOSPHATASE F
COMPND MOL_ID: 1; COMPND 2 MOLECULE: RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE F; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: FIBRONECTIN TYPE III DOMAIN; COMPND 5 SYNONYM: LAR PROTEIN, LEUKOCYTE ANTIGEN RELATED; COMPND 6 EC: 3.1.3.48; COMPND 7 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PTPRF, LAR; SOURCE 6 EXPRESSION_SYSTEM: CELL FREE SYNTHESIS; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: P050719-01; SOURCE 9 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS
KEYWDS LAR PROTEIN, LEUKOCYTE ANTIGEN RELATED, STRUCTURAL GENOMICS, KEYWDS 2 NPPSFA, NATIONAL PROJECT ON PROTEIN STRUCTURAL AND KEYWDS 3 FUNCTIONAL ANALYSES, RIKEN STRUCTURAL GENOMICS/PROTEOMICS KEYWDS 4 INITIATIVE, RSGI, SIGNALING PROTEIN, HYDROLASE
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR M.SATO,N.TOCHIO,S.KOSHIBA,M.INOUE,T.KIGAWA,S.YOKOYAMA,RIKEN AUTHOR 2 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI)
REVDAT 2 24-FEB-09 2DN7 1 VERSN REVDAT 1 25-OCT-06 2DN7 0
JRNL AUTH M.SATO,N.TOCHIO,S.KOSHIBA,M.INOUE,T.KIGAWA, JRNL AUTH 2 S.YOKOYAMA JRNL TITL SOLUTION STRUCTURES OF THE 6TH FN3 DOMAIN OF HUMAN JRNL TITL 2 RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE F JRNL REF TO BE PUBLISHED JRNL REFN
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 2.0.17 REMARK 3 AUTHORS : GUNTERT, P. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 2DN7 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 28-APR-06. REMARK 100 THE RCSB ID CODE IS RCSB025613.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 296 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1MM FN3 DOMAIN U-15N,13C; REMARK 210 20MM D-TRIS HCL; 100MM NACL; REMARK 210 1MM D-DTT; 0.02% NAN3; 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY, 3D_ REMARK 210 15N-SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 900 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR 3.5, NMRPIPE REMARK 210 20031121, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.932, CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION,STRUCTURES REMARK 210 WITH THE LEAST RESTRAINT REMARK 210 VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 THR A 18 -73.54 -112.71 REMARK 500 1 PRO A 34 95.95 -69.77 REMARK 500 1 LYS A 59 -26.13 -39.96 REMARK 500 1 ASP A 61 94.19 -62.95 REMARK 500 1 SER A 105 40.98 -99.62 REMARK 500 2 SER A 6 46.90 -80.71 REMARK 500 2 THR A 18 -73.41 -122.71 REMARK 500 2 PRO A 34 96.04 -69.83 REMARK 500 2 ASP A 61 92.53 -64.45 REMARK 500 2 GLU A 89 175.86 -58.94 REMARK 500 2 SER A 102 108.85 -51.69 REMARK 500 2 PRO A 104 90.05 -69.70 REMARK 500 3 SER A 6 73.08 -100.50 REMARK 500 3 THR A 18 -75.11 -106.91 REMARK 500 3 PRO A 34 96.18 -69.77 REMARK 500 3 ASP A 61 94.85 -64.50 REMARK 500 3 LEU A 101 179.65 -56.67 REMARK 500 4 PRO A 34 96.52 -69.75 REMARK 500 4 ASP A 61 91.23 -66.16 REMARK 500 4 GLU A 89 172.53 -57.42 REMARK 500 5 THR A 18 -61.15 -126.94 REMARK 500 5 PRO A 34 97.25 -69.76 REMARK 500 5 ASP A 61 97.71 -68.60 REMARK 500 5 GLU A 99 -32.96 -34.33 REMARK 500 5 ASP A 100 130.58 -175.63 REMARK 500 6 THR A 18 -66.51 -106.44 REMARK 500 6 PRO A 34 95.91 -69.73 REMARK 500 6 ASP A 61 96.01 -64.16 REMARK 500 6 GLU A 99 177.10 -52.47 REMARK 500 7 SER A 6 101.22 -58.53 REMARK 500 7 THR A 18 -66.66 -120.03 REMARK 500 7 PRO A 34 96.91 -69.75 REMARK 500 7 ASP A 61 97.87 -68.02 REMARK 500 7 GLU A 89 174.80 -54.29 REMARK 500 7 SER A 102 42.59 -102.44 REMARK 500 7 PRO A 104 2.45 -69.77 REMARK 500 8 SER A 2 114.62 -39.50 REMARK 500 8 GLU A 32 32.42 -86.89 REMARK 500 8 ASP A 61 91.32 -69.20 REMARK 500 8 GLU A 89 174.10 -49.46 REMARK 500 8 PRO A 104 94.66 -69.77 REMARK 500 8 SER A 105 161.45 -45.85 REMARK 500 9 SER A 6 40.83 38.38 REMARK 500 9 GLU A 32 33.04 -86.30 REMARK 500 9 PRO A 34 96.03 -69.78 REMARK 500 9 ASP A 61 90.49 -66.20 REMARK 500 9 GLU A 99 163.84 -41.83 REMARK 500 9 PRO A 104 88.50 -69.76 REMARK 500 10 THR A 18 -69.46 -105.48 REMARK 500 10 GLU A 32 37.46 -83.19 REMARK 500 10 PRO A 34 97.89 -69.78 REMARK 500 10 ASP A 61 92.51 -66.27 REMARK 500 10 ASP A 100 167.92 -48.84 REMARK 500 11 PRO A 34 95.94 -69.75 REMARK 500 11 ASP A 61 95.20 -64.34 REMARK 500 12 PRO A 34 98.47 -69.79 REMARK 500 12 ASP A 61 93.25 -69.73 REMARK 500 13 PRO A 34 96.21 -69.75 REMARK 500 13 LYS A 59 -18.60 -49.27 REMARK 500 13 SER A 102 118.06 -175.18 REMARK 500 14 SER A 5 138.54 -173.38 REMARK 500 14 LYS A 59 -32.08 -39.00 REMARK 500 14 ASP A 61 92.39 -64.80 REMARK 500 15 PRO A 34 96.63 -69.77 REMARK 500 15 ASP A 61 93.90 -63.90 REMARK 500 15 ARG A 96 117.57 -161.73 REMARK 500 15 LEU A 101 119.47 -170.94 REMARK 500 16 SER A 3 46.19 -93.88 REMARK 500 16 THR A 18 -69.72 -102.34 REMARK 500 16 GLU A 32 30.25 -85.90 REMARK 500 16 ASP A 61 93.94 -65.29 REMARK 500 16 SER A 106 41.09 -82.79 REMARK 500 17 PRO A 34 96.49 -69.73 REMARK 500 17 LYS A 59 -27.45 -39.55 REMARK 500 17 ASP A 61 93.73 -66.57 REMARK 500 17 SER A 102 119.31 -39.33 REMARK 500 18 THR A 18 -66.25 -100.61 REMARK 500 18 PRO A 34 96.56 -69.71 REMARK 500 18 ARG A 46 153.50 -48.56 REMARK 500 18 ASP A 61 93.01 -68.74 REMARK 500 19 SER A 3 162.56 -47.40 REMARK 500 19 THR A 18 -50.08 -122.81 REMARK 500 19 GLU A 32 37.99 -89.80 REMARK 500 19 PRO A 34 97.45 -69.74 REMARK 500 19 ASP A 61 94.11 -67.83 REMARK 500 19 SER A 106 113.86 -168.60 REMARK 500 20 SER A 2 101.80 -49.09 REMARK 500 20 GLU A 32 37.08 -91.46 REMARK 500 20 PRO A 34 95.84 -69.69 REMARK 500 20 ASP A 61 90.40 -62.71 REMARK 500 20 GLU A 89 173.35 -50.35 REMARK 500 20 GLU A 99 174.85 -50.82 REMARK 500 20 ASP A 100 -50.85 -124.61 REMARK 500 REMARK 500 REMARK: NULL
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSK003001516.1 RELATED DB: TARGETDB
DBREF 2DN7 A 8 101 UNP P10586 PTPRF_HUMAN 811 904
SEQADV 2DN7 GLY A 1 UNP P10586 CLONING ARTIFACT SEQADV 2DN7 SER A 2 UNP P10586 CLONING ARTIFACT SEQADV 2DN7 SER A 3 UNP P10586 CLONING ARTIFACT SEQADV 2DN7 GLY A 4 UNP P10586 CLONING ARTIFACT SEQADV 2DN7 SER A 5 UNP P10586 CLONING ARTIFACT SEQADV 2DN7 SER A 6 UNP P10586 CLONING ARTIFACT SEQADV 2DN7 GLY A 7 UNP P10586 CLONING ARTIFACT SEQADV 2DN7 SER A 102 UNP P10586 CLONING ARTIFACT SEQADV 2DN7 GLY A 103 UNP P10586 CLONING ARTIFACT SEQADV 2DN7 PRO A 104 UNP P10586 CLONING ARTIFACT SEQADV 2DN7 SER A 105 UNP P10586 CLONING ARTIFACT SEQADV 2DN7 SER A 106 UNP P10586 CLONING ARTIFACT SEQADV 2DN7 GLY A 107 UNP P10586 CLONING ARTIFACT
SEQRES 1 A 107 GLY SER SER GLY SER SER GLY PRO GLY ARG PRO THR MET SEQRES 2 A 107 MET ILE SER THR THR ALA MET ASN THR ALA LEU LEU GLN SEQRES 3 A 107 TRP HIS PRO PRO LYS GLU LEU PRO GLY GLU LEU LEU GLY SEQRES 4 A 107 TYR ARG LEU GLN TYR CYS ARG ALA ASP GLU ALA ARG PRO SEQRES 5 A 107 ASN THR ILE ASP PHE GLY LYS ASP ASP GLN HIS PHE THR SEQRES 6 A 107 VAL THR GLY LEU HIS LYS GLY THR THR TYR ILE PHE ARG SEQRES 7 A 107 LEU ALA ALA LYS ASN ARG ALA GLY LEU GLY GLU GLU PHE SEQRES 8 A 107 GLU LYS GLU ILE ARG THR PRO GLU ASP LEU SER GLY PRO SEQRES 9 A 107 SER SER GLY
SHEET 1 A 3 THR A 12 THR A 17 0 SHEET 2 A 3 THR A 22 HIS A 28 -1 O LEU A 24 N SER A 16 SHEET 3 A 3 HIS A 63 THR A 67 -1 O PHE A 64 N LEU A 25 SHEET 1 B 4 ASN A 53 GLY A 58 0 SHEET 2 B 4 GLY A 39 ARG A 46 -1 N LEU A 42 O ILE A 55 SHEET 3 B 4 THR A 74 ASN A 83 -1 O ARG A 78 N GLN A 43 SHEET 4 B 4 GLY A 86 ARG A 96 -1 O GLY A 86 N ASN A 83
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000