10 20 30 40 50 60 70 80 2DMP - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER DNA BINDING PROTEIN 24-APR-06 2DMP
TITLE SOLUTION STRUCTURE OF THE THIRD HOMEOBOX DOMAIN OF ZINC TITLE 2 FINGERS AND HOMEOBOXES PROTEIN 2
COMPND MOL_ID: 1; COMPND 2 MOLECULE: ZINC FINGERS AND HOMEOBOXES PROTEIN 2; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: HOMEOBOX DOMAIN; COMPND 5 SYNONYM: ZINC FINGER AND HOMEODOMAIN PROTEIN 2, ALPHA- COMPND 6 FETOPROTEIN REGULATOR 1, AFP REGULATOR 1, REGULATOR OF AFP; COMPND 7 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ZHX2; SOURCE 6 EXPRESSION_SYSTEM: CELL FREE SYNTHESIS; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: P050404-24; SOURCE 9 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS
KEYWDS HOMEOBOX DOMAIN, THREE HELICES WITH THE DNA BINDING HELIX- KEYWDS 2 TURN-HELIX MOTIF, STRUCTURAL GENOMICS, NPPSFA, NATIONAL KEYWDS 3 PROJECT ON PROTEIN STRUCTURAL AND FUNCTIONAL ANALYSES, KEYWDS 4 RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI, DNA KEYWDS 5 BINDING PROTEIN
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR S.OHNISHI,A.SASAGAWA,K.SAITO,S.KOSHIBA,M.INOUE,T.KIGAWA, AUTHOR 2 S.YOKOYAMA,RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE AUTHOR 3 (RSGI)
REVDAT 2 24-FEB-09 2DMP 1 VERSN REVDAT 1 24-OCT-06 2DMP 0
JRNL AUTH S.OHNISHI,A.SASAGAWA,K.SAITO,S.KOSHIBA,M.INOUE, JRNL AUTH 2 T.KIGAWA,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE THIRD HOMEOBOX DOMAIN OF JRNL TITL 2 ZINC FINGERS AND HOMEOBOXES PROTEIN 2 JRNL REF TO BE PUBLISHED JRNL REFN
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 2.0.17 REMARK 3 AUTHORS : GUNTERT, P. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 2DMP COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 26-APR-06. REMARK 100 THE RCSB ID CODE IS RCSB025596.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.2MM PROTEIN U-15N, 13C; REMARK 210 20MM D-TRIS-HCL(PH7.0); 100MM REMARK 210 NACL; 1MM D-DTT; 0.02% NAN3; REMARK 210 90% H2O, 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY, 3D_ REMARK 210 13C-SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR 3.5, NMRPIPE REMARK 210 20030801, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.965, CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION, STRUCTURES REMARK 210 WITH THE LOWEST ENERGY, REMARK 210 STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 PRO A 10 95.96 -69.75 REMARK 500 1 LEU A 33 -38.78 -36.74 REMARK 500 2 PRO A 14 -174.26 -69.80 REMARK 500 2 ASP A 58 -36.67 -37.27 REMARK 500 3 PRO A 10 1.41 -69.82 REMARK 500 4 PRO A 10 -174.38 -69.65 REMARK 500 4 LEU A 33 -37.95 -34.22 REMARK 500 4 PRO A 38 -179.61 -69.77 REMARK 500 4 ASP A 77 107.92 -54.56 REMARK 500 5 PRO A 10 -176.18 -69.87 REMARK 500 5 GLU A 29 -38.99 -38.50 REMARK 500 5 PRO A 38 -178.55 -69.75 REMARK 500 6 PRO A 14 -175.32 -69.84 REMARK 500 6 GLU A 72 173.54 -54.87 REMARK 500 6 PRO A 86 -178.20 -69.84 REMARK 500 7 PRO A 14 -178.28 -69.78 REMARK 500 7 LEU A 33 -39.86 -35.18 REMARK 500 7 PRO A 86 87.37 -69.84 REMARK 500 8 PRO A 38 -177.59 -69.83 REMARK 500 8 SER A 70 178.22 -54.64 REMARK 500 9 LEU A 33 -38.87 -36.38 REMARK 500 11 PRO A 38 -174.02 -69.79 REMARK 500 11 PRO A 86 1.96 -69.88 REMARK 500 12 PRO A 10 94.89 -69.77 REMARK 500 12 LEU A 33 -35.96 -34.40 REMARK 500 13 PRO A 38 -173.68 -69.77 REMARK 500 13 ASP A 44 -39.99 -39.58 REMARK 500 14 PRO A 14 -176.12 -69.79 REMARK 500 14 GLU A 29 -37.43 -36.22 REMARK 500 14 PRO A 38 -177.82 -69.73 REMARK 500 14 ASP A 44 -36.32 -39.56 REMARK 500 15 PRO A 10 1.64 -69.82 REMARK 500 16 PRO A 10 8.38 -69.71 REMARK 500 16 ARG A 64 -28.41 -38.85 REMARK 500 16 ALA A 74 172.58 -53.46 REMARK 500 16 SER A 81 107.57 -53.54 REMARK 500 16 PRO A 86 95.42 -69.75 REMARK 500 17 ALA A 74 106.31 -59.45 REMARK 500 18 PRO A 10 6.64 -69.68 REMARK 500 19 LEU A 33 -36.36 -34.24 REMARK 500 20 PRO A 38 -173.25 -69.67 REMARK 500 20 PRO A 86 -175.40 -69.80 REMARK 500 REMARK 500 REMARK: NULL
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSK002000833.1 RELATED DB: TARGETDB
DBREF 2DMP A 8 83 UNP Q9Y6X8 ZHX2_HUMAN 524 601
SEQADV 2DMP GLY A 1 UNP Q9Y6X8 CLONING ARTIFACT SEQADV 2DMP SER A 2 UNP Q9Y6X8 CLONING ARTIFACT SEQADV 2DMP SER A 3 UNP Q9Y6X8 CLONING ARTIFACT SEQADV 2DMP GLY A 4 UNP Q9Y6X8 CLONING ARTIFACT SEQADV 2DMP SER A 5 UNP Q9Y6X8 CLONING ARTIFACT SEQADV 2DMP SER A 6 UNP Q9Y6X8 CLONING ARTIFACT SEQADV 2DMP GLY A 7 UNP Q9Y6X8 CLONING ARTIFACT SEQADV 2DMP SER A 84 UNP Q9Y6X8 CLONING ARTIFACT SEQADV 2DMP GLY A 85 UNP Q9Y6X8 CLONING ARTIFACT SEQADV 2DMP PRO A 86 UNP Q9Y6X8 CLONING ARTIFACT SEQADV 2DMP SER A 87 UNP Q9Y6X8 CLONING ARTIFACT SEQADV 2DMP SER A 88 UNP Q9Y6X8 CLONING ARTIFACT SEQADV 2DMP GLY A 89 UNP Q9Y6X8 CLONING ARTIFACT
SEQRES 1 A 89 GLY SER SER GLY SER SER GLY ALA TYR PRO ASP PHE ALA SEQRES 2 A 89 PRO GLN LYS PHE LYS GLU LYS THR GLN GLY GLN VAL LYS SEQRES 3 A 89 ILE LEU GLU ASP SER PHE LEU LYS SER SER PHE PRO THR SEQRES 4 A 89 GLN ALA GLU LEU ASP ARG LEU ARG VAL GLU THR LYS LEU SEQRES 5 A 89 SER ARG ARG GLU ILE ASP SER TRP PHE SER GLU ARG ARG SEQRES 6 A 89 LYS LEU ARG ASP SER MET GLU GLN ALA VAL LEU ASP SER SEQRES 7 A 89 MET GLY SER GLY LYS SER GLY PRO SER SER GLY
HELIX 1 1 THR A 21 SER A 35 1 15 HELIX 2 2 THR A 39 LYS A 51 1 13 HELIX 3 3 SER A 53 SER A 70 1 18
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000