10 20 30 40 50 60 70 80 2DLS - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER SIGNALING PROTEIN 20-APR-06 2DLS
TITLE SOLUTION STRUCTURE OF THE PDZ DOMAIN OF HUMAN RHO GUANINE TITLE 2 NUCLEOTIDE EXCHANGE FACTOR 11
COMPND MOL_ID: 1; COMPND 2 MOLECULE: RHO GUANINE NUCLEOTIDE EXCHANGE FACTOR 11; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: PDZ DOMAIN; COMPND 5 SYNONYM: PDZ-RHOGEF; COMPND 6 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ARHGEF11, KIAA0380; SOURCE 6 EXPRESSION_SYSTEM: CELL FREE SYNTHESIS; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: P050919-12; SOURCE 9 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS
KEYWDS PDZ DOMAIN, RHO GUANINE NUCLEOTIDE EXCHANGE FACTOR 11, PDZ- KEYWDS 2 RHOGEF, ARHGEF11, KIAA0380, STRUCTURAL GENOMICS, NPPSFA, KEYWDS 3 NATIONAL PROJECT ON PROTEIN STRUCTURAL AND FUNCTIONAL KEYWDS 4 ANALYSES, RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, KEYWDS 5 RSGI, SIGNALING PROTEIN
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR K.INOUE,T.SUETAKE,F.HAYASHI,S.YOKOYAMA,RIKEN STRUCTURAL AUTHOR 2 GENOMICS/PROTEOMICS INITIATIVE (RSGI)
REVDAT 2 24-FEB-09 2DLS 1 VERSN REVDAT 1 20-OCT-06 2DLS 0
JRNL AUTH K.INOUE,T.SUETAKE,F.HAYASHI,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE PDZ DOMAIN OF HUMAN RHO JRNL TITL 2 GUANINE NUCLEOTIDE EXCHANGE FACTOR 11 JRNL REF TO BE PUBLISHED JRNL REFN
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 2.0.17 REMARK 3 AUTHORS : GUNTERT, P. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 2DLS COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 21-APR-06. REMARK 100 THE RCSB ID CODE IS RCSB025563.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 293 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.20MM U-15N, 13C-LABELED REMARK 210 PROTEIN; 20MM D-TRIS-HCL; REMARK 210 100MM NACL; 1MM D-DTT; 0.02% REMARK 210 NAN3; 90% H2O, 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY, 3D_ REMARK 210 13C-SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : VNMR 6.1C, NMRPIPE 20031121, REMARK 210 NMRVIEW 5.0.4, KUJIRA 0.93191, REMARK 210 CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION, STRUCTURES REMARK 210 WITH THE LOWEST ENERGY, REMARK 210 STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 5 109.95 -40.90 REMARK 500 1 GLN A 18 61.26 -112.37 REMARK 500 1 SER A 26 129.54 -171.00 REMARK 500 1 ASP A 28 -70.90 -73.89 REMARK 500 1 VAL A 33 109.34 -58.67 REMARK 500 1 SER A 64 158.30 -39.08 REMARK 500 2 SER A 2 42.48 37.62 REMARK 500 2 PHE A 21 151.28 -35.97 REMARK 500 2 SER A 26 141.31 -172.42 REMARK 500 2 SER A 86 155.16 -43.97 REMARK 500 2 SER A 88 123.69 -36.05 REMARK 500 2 PRO A 90 95.30 -69.79 REMARK 500 3 LYS A 16 148.59 -35.46 REMARK 500 3 ARG A 37 142.05 -36.72 REMARK 500 3 PRO A 38 89.50 -69.76 REMARK 500 3 ASN A 63 65.53 -118.64 REMARK 500 4 GLN A 18 -31.53 -38.45 REMARK 500 4 VAL A 33 106.54 -46.41 REMARK 500 4 ARG A 37 140.64 -38.65 REMARK 500 4 SER A 75 92.44 -50.31 REMARK 500 5 SER A 3 134.53 -171.11 REMARK 500 5 ASP A 17 -40.60 -131.49 REMARK 500 5 GLN A 18 65.08 -118.27 REMARK 500 5 ASP A 28 -70.17 -63.83 REMARK 500 5 PRO A 38 82.19 -69.75 REMARK 500 5 SER A 64 159.52 -42.65 REMARK 500 5 LYS A 74 58.56 -95.66 REMARK 500 5 SER A 91 160.42 -47.26 REMARK 500 6 GLN A 18 -67.23 -134.99 REMARK 500 6 ASP A 28 -74.84 -79.28 REMARK 500 6 PRO A 38 99.29 -69.77 REMARK 500 6 ALA A 41 -50.67 -124.33 REMARK 500 6 ASN A 63 33.51 71.05 REMARK 500 7 GLN A 18 42.79 -109.35 REMARK 500 7 ARG A 29 -68.36 -106.48 REMARK 500 7 ARG A 37 139.84 -34.96 REMARK 500 7 PRO A 38 88.47 -69.78 REMARK 500 7 VAL A 61 34.00 -97.41 REMARK 500 7 SER A 64 150.78 -43.90 REMARK 500 8 LYS A 16 137.22 -38.91 REMARK 500 8 ASP A 17 -70.76 -107.57 REMARK 500 8 THR A 62 -36.22 -132.03 REMARK 500 8 LYS A 74 53.22 -95.49 REMARK 500 9 SER A 3 -61.93 -99.26 REMARK 500 9 SER A 5 131.81 -38.11 REMARK 500 9 SER A 26 144.17 -173.68 REMARK 500 9 PRO A 90 91.28 -69.75 REMARK 500 10 GLN A 18 47.51 -98.76 REMARK 500 10 PRO A 38 94.37 -69.81 REMARK 500 10 VAL A 61 39.24 -92.52 REMARK 500 10 LYS A 71 -39.99 -34.73 REMARK 500 10 LYS A 74 46.74 -90.49 REMARK 500 10 PRO A 90 89.04 -69.80 REMARK 500 10 SER A 92 42.75 -109.81 REMARK 500 11 SER A 3 94.97 -51.94 REMARK 500 11 GLN A 18 36.93 70.59 REMARK 500 11 ASP A 28 -71.07 -77.84 REMARK 500 11 ARG A 29 -75.08 -71.14 REMARK 500 11 ARG A 37 136.69 -36.77 REMARK 500 11 PRO A 38 88.69 -69.75 REMARK 500 11 SER A 64 161.64 -43.78 REMARK 500 11 LYS A 74 -72.01 -42.68 REMARK 500 11 SER A 75 106.56 -47.64 REMARK 500 11 SER A 88 51.00 36.76 REMARK 500 12 PHE A 21 -176.86 -65.25 REMARK 500 12 ILE A 30 76.54 -102.01 REMARK 500 12 VAL A 31 105.01 -32.88 REMARK 500 13 SER A 6 88.71 -68.17 REMARK 500 13 ASP A 28 -70.45 -70.85 REMARK 500 13 VAL A 33 102.55 -58.24 REMARK 500 13 LYS A 74 43.72 -94.81 REMARK 500 14 LYS A 16 170.55 -59.30 REMARK 500 14 PHE A 21 170.64 -51.63 REMARK 500 14 ILE A 30 78.84 -108.91 REMARK 500 14 SER A 64 154.34 -37.10 REMARK 500 14 LEU A 67 -36.76 -38.00 REMARK 500 15 SER A 3 171.93 -57.50 REMARK 500 15 LYS A 16 118.13 -34.62 REMARK 500 15 HIS A 19 42.64 38.23 REMARK 500 15 PHE A 21 168.18 -49.98 REMARK 500 15 VAL A 31 97.89 -35.22 REMARK 500 15 VAL A 33 108.91 -57.56 REMARK 500 15 PRO A 38 90.03 -69.81 REMARK 500 15 HIS A 66 -70.24 -69.51 REMARK 500 15 SER A 88 74.61 -63.88 REMARK 500 16 SER A 5 43.71 36.79 REMARK 500 16 PHE A 21 164.68 -45.37 REMARK 500 16 VAL A 31 107.27 -49.43 REMARK 500 16 ARG A 37 134.61 -38.22 REMARK 500 16 PRO A 38 99.58 -69.78 REMARK 500 16 ALA A 41 -52.49 -120.93 REMARK 500 16 MET A 60 104.97 -59.15 REMARK 500 16 HIS A 66 -71.98 -40.56 REMARK 500 16 GLU A 68 -38.66 -39.24 REMARK 500 17 ASP A 28 -179.19 -175.07 REMARK 500 17 VAL A 31 128.38 -33.19 REMARK 500 17 ARG A 37 139.56 -36.61 REMARK 500 17 PRO A 38 90.17 -69.73 REMARK 500 17 LYS A 71 -32.97 -36.66 REMARK 500 17 LYS A 74 -73.57 -41.44 REMARK 500 17 SER A 75 103.69 -42.04 REMARK 500 17 SER A 88 127.00 -34.65 REMARK 500 17 PRO A 90 2.70 -69.77 REMARK 500 18 LYS A 16 107.87 -34.47 REMARK 500 18 GLN A 18 50.39 -111.66 REMARK 500 18 PHE A 21 174.60 -56.05 REMARK 500 18 ASP A 28 -75.19 -76.18 REMARK 500 18 ARG A 29 -73.36 -62.70 REMARK 500 18 ARG A 37 135.97 -36.06 REMARK 500 18 PRO A 38 82.48 -69.74 REMARK 500 18 ASN A 57 29.12 48.90 REMARK 500 18 SER A 87 -61.15 -130.79 REMARK 500 18 SER A 88 103.11 -50.83 REMARK 500 18 PRO A 90 95.66 -69.82 REMARK 500 19 SER A 2 40.96 35.29 REMARK 500 19 SER A 5 -59.10 -121.02 REMARK 500 19 PRO A 38 3.61 -69.71 REMARK 500 19 SER A 75 102.11 -44.92 REMARK 500 19 SER A 91 131.02 -34.55 REMARK 500 20 SER A 3 140.25 -172.67 REMARK 500 20 SER A 5 -48.27 -132.47 REMARK 500 20 ASP A 28 -70.85 -75.35 REMARK 500 20 ARG A 29 -70.68 -66.11 REMARK 500 20 ARG A 37 135.04 -37.90 REMARK 500 20 SER A 64 -176.79 -51.98 REMARK 500 20 LYS A 74 -71.86 -65.53 REMARK 500 20 SER A 75 107.09 -37.48 REMARK 500 20 ALA A 77 -34.70 -35.67 REMARK 500 REMARK 500 REMARK: NULL
REMARK 650 REMARK 650 HELIX REMARK 650 DETERMINATION METHOD: AUTHOR DETERMINED
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSK002000370.1 RELATED DB: TARGETDB
DBREF 2DLS A 8 87 UNP O15085 ARHGB_HUMAN 44 123
SEQADV 2DLS GLY A 1 UNP O15085 CLONING ARTIFACT SEQADV 2DLS SER A 2 UNP O15085 CLONING ARTIFACT SEQADV 2DLS SER A 3 UNP O15085 CLONING ARTIFACT SEQADV 2DLS GLY A 4 UNP O15085 CLONING ARTIFACT SEQADV 2DLS SER A 5 UNP O15085 CLONING ARTIFACT SEQADV 2DLS SER A 6 UNP O15085 CLONING ARTIFACT SEQADV 2DLS GLY A 7 UNP O15085 CLONING ARTIFACT SEQADV 2DLS SER A 88 UNP O15085 CLONING ARTIFACT SEQADV 2DLS GLY A 89 UNP O15085 CLONING ARTIFACT SEQADV 2DLS PRO A 90 UNP O15085 CLONING ARTIFACT SEQADV 2DLS SER A 91 UNP O15085 CLONING ARTIFACT SEQADV 2DLS SER A 92 UNP O15085 CLONING ARTIFACT SEQADV 2DLS GLY A 93 UNP O15085 CLONING ARTIFACT
SEQRES 1 A 93 GLY SER SER GLY SER SER GLY VAL GLN ARG CYS VAL ILE SEQRES 2 A 93 ILE GLN LYS ASP GLN HIS GLY PHE GLY PHE THR VAL SER SEQRES 3 A 93 GLY ASP ARG ILE VAL LEU VAL GLN SER VAL ARG PRO GLY SEQRES 4 A 93 GLY ALA ALA MET LYS ALA GLY VAL LYS GLU GLY ASP ARG SEQRES 5 A 93 ILE ILE LYS VAL ASN GLY THR MET VAL THR ASN SER SER SEQRES 6 A 93 HIS LEU GLU VAL VAL LYS LEU ILE LYS SER GLY ALA TYR SEQRES 7 A 93 VAL ALA LEU THR LEU LEU GLY SER SER SER GLY PRO SER SEQRES 8 A 93 SER GLY
HELIX 1 1 ALA A 42 ALA A 45 1 4 HELIX 2 2 SER A 65 LYS A 74 1 10
SHEET 1 A 4 GLN A 9 GLN A 15 0 SHEET 2 A 4 TYR A 78 LEU A 84 -1 O LEU A 81 N VAL A 12 SHEET 3 A 4 ARG A 52 VAL A 56 -1 N ILE A 54 O THR A 82 SHEET 4 A 4 THR A 59 MET A 60 -1 O THR A 59 N VAL A 56 SHEET 1 B 2 PHE A 23 SER A 26 0 SHEET 2 B 2 LEU A 32 VAL A 36 -1 O GLN A 34 N THR A 24
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000