2DLO - Header Asymmetric Unit

HEADER CELL ADHESION 20-APR-06 2DLO

TITLE SOLUTION STRUCTURE OF THE SECOND LIM DOMAIN OF HUMAN TITLE 2 THYROID RECEPTOR-INTERACTING PROTEIN 6

COMPND MOL_ID: 1; COMPND 2 MOLECULE: THYROID RECEPTOR-INTERACTING PROTEIN 6; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: LIM DOMAIN, LIM ZINC-BINDING 2; COMPND 5 SYNONYM: TRIP6, OPA-INTERACTING PROTEIN 1, ZYXIN-RELATED COMPND 6 PROTEIN 1, ZRP-1; COMPND 7 ENGINEERED: YES

SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: TRIP6, OIP1; SOURCE 6 EXPRESSION_SYSTEM: CELL FREE SYNTHESIS; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: P041101-03; SOURCE 9 OTHER_DETAILS: CELL FREE PROTEIN SYNTHESIS

KEYWDS LIM DOMAIN, THYROID RECEPTOR INTERACTING PROTEIN 6 (TRIP6), KEYWDS 2 OPA-INTERACTING PROTEIN 1, ZYXIN RELATED PROTEIN 1 (ZRP-1), KEYWDS 3 STRUCTURAL GENOMICS, NPPSFA, NATIONAL PROJECT ON PROTEIN KEYWDS 4 STRUCTURAL AND FUNCTIONAL ANALYSES, RIKEN STRUCTURAL KEYWDS 5 GENOMICS/PROTEOMICS INITIATIVE, RSGI, CELL ADHESION

EXPDTA SOLUTION NMR

NUMMDL 20

AUTHOR X.R.QIN,F.HAYASHI,S.YOKOYAMA,RIKEN STRUCTURAL AUTHOR 2 GENOMICS/PROTEOMICS INITIATIVE (RSGI)

REVDAT 2 24-FEB-09 2DLO 1 VERSN REVDAT 1 20-OCT-06 2DLO 0

JRNL AUTH X.R.QIN,F.HAYASHI,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE SECOND LIM DOMAIN OF JRNL TITL 2 HUMAN THYROID RECEPTOR-INTERACTING PROTEIN 6 JRNL REF TO BE PUBLISHED JRNL REFN

REMARK 1

REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.

REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 2.0.17 REMARK 3 AUTHORS : GUNTERT, P. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL

REMARK 4 REMARK 4 2DLO COMPLIES WITH FORMAT V. 3.15, 01-DEC-08

REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 24-APR-06. REMARK 100 THE RCSB ID CODE IS RCSB025559.

REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.54MM 13C, 15N-LABELED REMARK 210 PROTEIN; 20MM D-TRIS- REMARK 210 HCL(PH7.0); 100MM NACL; 1MM D- REMARK 210 DTT; 0.02% NAN3; 0.25MM ZNCL2+ REMARK 210 1MMIDA; 90% H2O, 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY, 3D_ REMARK 210 13C-SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : VNMR 6.1C, NMRPIPE 20031121, REMARK 210 NMRVIEW 5.0.4, KUJIRA 0.9296, REMARK 210 CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION, STRUCTURES REMARK 210 WITH THE LOWEST ENERGY, REMARK 210 STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL

REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.

REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 5 111.27 -164.28 REMARK 500 1 GLU A 8 80.67 -67.58 REMARK 500 1 THR A 14 46.68 32.04 REMARK 500 1 ASP A 27 -70.25 -66.47 REMARK 500 1 PRO A 39 3.74 -69.73 REMARK 500 1 PHE A 42 107.90 -55.17 REMARK 500 1 VAL A 46 -70.59 -90.77 REMARK 500 1 ILE A 64 112.06 -39.23 REMARK 500 1 ALA A 75 56.04 -95.14 REMARK 500 2 ALA A 13 -177.92 -174.58 REMARK 500 2 THR A 14 84.35 -68.56 REMARK 500 2 LEU A 26 -42.98 -130.52 REMARK 500 2 PRO A 39 3.71 -69.72 REMARK 500 2 PHE A 42 98.99 -53.78 REMARK 500 2 VAL A 46 -74.02 -97.21 REMARK 500 2 LEU A 51 44.85 -90.74 REMARK 500 2 THR A 61 31.79 -90.04 REMARK 500 2 PRO A 78 -177.36 -69.77 REMARK 500 3 CYS A 10 74.11 -111.43 REMARK 500 3 PRO A 39 4.66 -69.87 REMARK 500 3 VAL A 46 -73.46 -93.75 REMARK 500 3 ASP A 59 -75.14 -127.40 REMARK 500 3 ALA A 60 -50.41 -134.61 REMARK 500 3 THR A 61 33.35 -84.83 REMARK 500 3 SER A 62 36.50 36.64 REMARK 500 3 ILE A 64 103.09 -34.41 REMARK 500 3 ALA A 75 67.09 -108.91 REMARK 500 3 SER A 79 137.18 -174.72 REMARK 500 4 THR A 14 80.16 -68.76 REMARK 500 4 PRO A 39 3.88 -69.78 REMARK 500 4 PHE A 42 100.17 -51.64 REMARK 500 4 CYS A 44 163.91 -49.29 REMARK 500 4 VAL A 46 -72.15 -97.94 REMARK 500 4 LEU A 51 37.97 -97.01 REMARK 500 4 ILE A 64 107.63 -58.69 REMARK 500 4 PRO A 78 -173.64 -69.73 REMARK 500 5 LEU A 26 -41.51 -132.67 REMARK 500 5 PRO A 39 3.78 -69.77 REMARK 500 5 PHE A 42 106.94 -50.78 REMARK 500 5 VAL A 46 -73.21 -97.66 REMARK 500 5 THR A 61 32.51 -91.89 REMARK 500 5 SER A 62 38.02 38.00 REMARK 500 5 HIS A 71 -70.27 -84.10 REMARK 500 5 ARG A 72 -39.69 -37.88 REMARK 500 6 CYS A 10 128.72 -170.12 REMARK 500 6 ALA A 13 108.10 -175.21 REMARK 500 6 THR A 14 51.83 32.37 REMARK 500 6 SER A 22 50.00 70.65 REMARK 500 6 ASP A 27 -74.83 -68.28 REMARK 500 6 PRO A 39 3.55 -69.71 REMARK 500 6 PHE A 42 107.46 -56.87 REMARK 500 6 VAL A 46 -71.37 -94.57 REMARK 500 6 LEU A 51 41.82 -102.54 REMARK 500 6 SER A 76 42.91 38.44 REMARK 500 7 ALA A 13 -176.55 -174.80 REMARK 500 7 THR A 14 46.36 -81.73 REMARK 500 7 ASP A 27 -72.53 -69.17 REMARK 500 7 PRO A 39 3.65 -69.74 REMARK 500 7 PHE A 42 105.13 -52.53 REMARK 500 7 VAL A 46 -74.33 -95.19 REMARK 500 7 LEU A 51 35.23 -88.63 REMARK 500 7 ALA A 60 -39.77 -37.58 REMARK 500 7 THR A 61 37.44 -89.14 REMARK 500 7 SER A 62 42.92 34.36 REMARK 500 8 CYS A 10 43.16 -82.95 REMARK 500 8 PRO A 39 3.88 -69.80 REMARK 500 8 PHE A 42 103.88 -50.88 REMARK 500 8 VAL A 46 -73.01 -95.86 REMARK 500 8 THR A 57 146.75 -170.18 REMARK 500 8 ASP A 59 -75.50 -127.82 REMARK 500 8 ALA A 60 -60.28 -134.80 REMARK 500 8 SER A 62 31.53 73.92 REMARK 500 8 ILE A 64 110.03 -33.32 REMARK 500 8 ALA A 75 39.08 -81.89 REMARK 500 9 SER A 6 116.37 -166.05 REMARK 500 9 TYR A 11 171.66 -53.64 REMARK 500 9 THR A 14 79.47 -68.78 REMARK 500 9 ASP A 27 -71.80 -60.70 REMARK 500 9 PRO A 39 3.84 -69.79 REMARK 500 9 PHE A 42 97.78 -54.75 REMARK 500 9 VAL A 46 -74.01 -95.73 REMARK 500 9 LEU A 51 33.77 -97.43 REMARK 500 9 THR A 61 36.96 -89.22 REMARK 500 9 SER A 62 39.82 38.11 REMARK 500 9 ILE A 64 96.56 -60.61 REMARK 500 10 ALA A 13 -179.29 -174.76 REMARK 500 10 MET A 33 25.86 43.09 REMARK 500 10 PRO A 39 2.31 -69.76 REMARK 500 10 THR A 57 142.57 -175.33 REMARK 500 10 ASP A 59 -75.74 -125.61 REMARK 500 10 ALA A 60 -46.83 -134.39 REMARK 500 10 THR A 61 36.44 -86.02 REMARK 500 10 SER A 62 33.57 35.49 REMARK 500 10 ILE A 64 106.20 -42.80 REMARK 500 10 HIS A 71 -70.18 -73.50 REMARK 500 10 SER A 76 42.13 36.75 REMARK 500 11 GLU A 8 -44.94 -132.55 REMARK 500 11 CYS A 10 126.60 -37.25 REMARK 500 11 ALA A 13 105.01 -174.90 REMARK 500 11 THR A 14 52.38 31.89 REMARK 500 11 THR A 20 -62.25 -109.81 REMARK 500 11 ASP A 27 -73.58 -59.92 REMARK 500 11 PRO A 39 3.30 -69.77 REMARK 500 11 PHE A 42 101.99 -59.66 REMARK 500 11 VAL A 46 -73.35 -94.23 REMARK 500 11 ILE A 64 107.60 -40.77 REMARK 500 11 PHE A 70 -34.14 -37.84 REMARK 500 12 SER A 5 138.91 -174.90 REMARK 500 12 CYS A 10 -60.29 -130.26 REMARK 500 12 ALA A 13 -176.19 -170.56 REMARK 500 12 ASP A 27 -70.35 -61.54 REMARK 500 12 PRO A 39 4.02 -69.74 REMARK 500 12 PHE A 42 102.47 -51.50 REMARK 500 12 VAL A 46 -74.02 -94.23 REMARK 500 12 LEU A 51 41.24 -95.41 REMARK 500 12 ILE A 64 103.71 -56.09 REMARK 500 12 ALA A 75 45.08 -92.52 REMARK 500 13 THR A 14 47.99 -77.43 REMARK 500 13 SER A 22 46.00 72.86 REMARK 500 13 ASP A 27 -74.67 -67.25 REMARK 500 13 PRO A 39 3.41 -69.77 REMARK 500 13 PHE A 42 95.95 -52.67 REMARK 500 13 VAL A 46 -72.70 -95.59 REMARK 500 13 ILE A 64 109.10 -34.89 REMARK 500 14 VAL A 12 150.63 -34.82 REMARK 500 14 SER A 22 46.57 73.97 REMARK 500 14 ASP A 27 -71.55 -64.50 REMARK 500 14 PRO A 39 3.34 -69.73 REMARK 500 14 VAL A 46 -65.86 -101.65 REMARK 500 14 THR A 61 36.14 -93.33 REMARK 500 14 SER A 62 41.69 34.15 REMARK 500 15 THR A 14 83.43 -67.55 REMARK 500 15 PRO A 39 4.63 -69.83 REMARK 500 15 PHE A 42 99.41 -52.67 REMARK 500 15 VAL A 46 -70.01 -91.55 REMARK 500 15 LEU A 51 42.61 -98.04 REMARK 500 15 THR A 61 37.47 -89.81 REMARK 500 15 SER A 62 45.18 34.56 REMARK 500 15 ILE A 64 104.25 -51.55 REMARK 500 15 ALA A 75 45.83 -103.18 REMARK 500 16 ALA A 13 -178.06 -174.90 REMARK 500 16 THR A 14 80.98 -65.55 REMARK 500 16 PRO A 39 3.12 -69.76 REMARK 500 16 PHE A 42 101.53 -51.04 REMARK 500 16 VAL A 46 -69.95 -95.36 REMARK 500 16 LEU A 51 44.86 -90.02 REMARK 500 17 ALA A 13 -178.14 -170.94 REMARK 500 17 THR A 14 49.65 -75.69 REMARK 500 17 ASP A 27 -75.24 -66.58 REMARK 500 17 PRO A 39 4.35 -69.72 REMARK 500 17 PHE A 42 106.15 -53.51 REMARK 500 17 VAL A 46 -68.20 -95.74 REMARK 500 17 LEU A 51 39.27 -97.54 REMARK 500 17 THR A 61 34.95 -87.62 REMARK 500 17 SER A 62 36.65 36.07 REMARK 500 17 ILE A 64 104.34 -58.40 REMARK 500 17 PRO A 78 95.69 -69.73 REMARK 500 18 GLU A 8 43.70 -92.79 REMARK 500 18 ALA A 13 -175.16 -170.56 REMARK 500 18 PRO A 39 3.52 -69.66 REMARK 500 18 PHE A 42 98.07 -50.65 REMARK 500 18 VAL A 46 -75.14 -105.09 REMARK 500 18 LEU A 51 42.91 -96.97 REMARK 500 18 THR A 61 32.94 -88.10 REMARK 500 18 SER A 62 41.19 39.63 REMARK 500 18 ILE A 64 94.29 -60.48 REMARK 500 19 ALA A 13 -176.96 -171.94 REMARK 500 19 THR A 14 78.42 -69.92 REMARK 500 19 SER A 22 50.57 70.04 REMARK 500 19 LEU A 26 -42.33 -131.28 REMARK 500 19 PRO A 39 3.51 -69.77 REMARK 500 19 VAL A 46 -72.32 -93.21 REMARK 500 19 ASP A 59 -75.29 -127.69 REMARK 500 19 ALA A 60 -52.19 -133.41 REMARK 500 19 THR A 61 34.20 -85.88 REMARK 500 19 SER A 62 34.18 39.13 REMARK 500 19 ILE A 64 100.51 -38.49 REMARK 500 19 ALA A 75 172.23 -57.91 REMARK 500 19 SER A 76 109.06 -55.53 REMARK 500 19 SER A 80 152.51 -43.51 REMARK 500 20 THR A 14 -18.35 -48.93 REMARK 500 20 LEU A 26 -44.52 -133.08 REMARK 500 20 PRO A 39 3.70 -69.72 REMARK 500 20 PHE A 42 108.99 -54.33 REMARK 500 20 VAL A 46 -72.69 -97.43 REMARK 500 20 LEU A 51 40.04 -100.84 REMARK 500 20 THR A 61 32.27 -92.94 REMARK 500 20 SER A 62 42.31 34.94 REMARK 500 REMARK 500 REMARK: NULL

REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 1 ZN A 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 18 SG REMARK 620 2 CYS A 21 SG 104.2 REMARK 620 3 HIS A 38 ND1 102.3 105.4 REMARK 620 4 CYS A 41 SG 112.4 116.5 114.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 1 ZN A 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 44 SG REMARK 620 2 CYS A 47 SG 103.7 REMARK 620 3 CYS A 66 SG 112.9 105.1 REMARK 620 4 ASP A 69 OD1 153.2 101.7 68.2 REMARK 620 5 ASP A 69 OD2 116.2 109.4 108.9 45.3 REMARK 620 N 1 2 3 4

REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 201 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 401

REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1X61 RELATED DB: PDB REMARK 900 THE OTHER REGION OF THE SAME PROTEIN REMARK 900 RELATED ID: HSI002005302.2 RELATED DB: TARGETDB

DBREF 2DLO A 8 75 UNP Q15654 TRIP6_HUMAN 329 396

SEQADV 2DLO GLY A 1 UNP Q15654 CLONING ARTIFACT SEQADV 2DLO SER A 2 UNP Q15654 CLONING ARTIFACT SEQADV 2DLO SER A 3 UNP Q15654 CLONING ARTIFACT SEQADV 2DLO GLY A 4 UNP Q15654 CLONING ARTIFACT SEQADV 2DLO SER A 5 UNP Q15654 CLONING ARTIFACT SEQADV 2DLO SER A 6 UNP Q15654 CLONING ARTIFACT SEQADV 2DLO GLY A 7 UNP Q15654 CLONING ARTIFACT SEQADV 2DLO SER A 76 UNP Q15654 CLONING ARTIFACT SEQADV 2DLO GLY A 77 UNP Q15654 CLONING ARTIFACT SEQADV 2DLO PRO A 78 UNP Q15654 CLONING ARTIFACT SEQADV 2DLO SER A 79 UNP Q15654 CLONING ARTIFACT SEQADV 2DLO SER A 80 UNP Q15654 CLONING ARTIFACT SEQADV 2DLO GLY A 81 UNP Q15654 CLONING ARTIFACT

SEQRES 1 A 81 GLY SER SER GLY SER SER GLY GLU GLY CYS TYR VAL ALA SEQRES 2 A 81 THR LEU GLU LYS CYS ALA THR CYS SER GLN PRO ILE LEU SEQRES 3 A 81 ASP ARG ILE LEU ARG ALA MET GLY LYS ALA TYR HIS PRO SEQRES 4 A 81 GLY CYS PHE THR CYS VAL VAL CYS HIS ARG GLY LEU ASP SEQRES 5 A 81 GLY ILE PRO PHE THR VAL ASP ALA THR SER GLN ILE HIS SEQRES 6 A 81 CYS ILE GLU ASP PHE HIS ARG LYS PHE ALA SER GLY PRO SEQRES 7 A 81 SER SER GLY

HET ZN A 201 1 HET ZN A 401 1

HETNAM ZN ZINC ION

FORMUL 2 ZN 2(ZN 2+)

HELIX 1 1 ILE A 67 PHE A 74 1 8

SHEET 1 A 2 LEU A 30 ALA A 32 0 SHEET 2 A 2 LYS A 35 TYR A 37 -1 O TYR A 37 N LEU A 30 SHEET 1 B 2 PHE A 56 THR A 57 0 SHEET 2 B 2 HIS A 65 CYS A 66 -1 O HIS A 65 N THR A 57

LINK ZN ZN A 201 SG CYS A 18 1555 1555 2.39 LINK ZN ZN A 201 SG CYS A 21 1555 1555 2.29 LINK ZN ZN A 201 ND1 HIS A 38 1555 1555 2.08 LINK ZN ZN A 201 SG CYS A 41 1555 1555 2.25 LINK ZN ZN A 401 SG CYS A 44 1555 1555 2.31 LINK ZN ZN A 401 SG CYS A 47 1555 1555 2.35 LINK ZN ZN A 401 SG CYS A 66 1555 1555 2.25 LINK ZN ZN A 401 OD1 ASP A 69 1555 1555 3.09 LINK ZN ZN A 401 OD2 ASP A 69 1555 1555 2.05

SITE 1 AC1 4 CYS A 18 CYS A 21 HIS A 38 CYS A 41 SITE 1 AC2 4 CYS A 44 CYS A 47 CYS A 66 ASP A 69

CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1

ORIGX1 1.000000 0.000000 0.000000 0.00000

ORIGX2 0.000000 1.000000 0.000000 0.00000

ORIGX3 0.000000 0.000000 1.000000 0.00000

SCALE1 1.000000 0.000000 0.000000 0.00000

SCALE2 0.000000 1.000000 0.000000 0.00000

SCALE3 0.000000 0.000000 1.000000 0.00000