10 20 30 40 50 60 70 80 2DLL - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER CYTOKINE 20-APR-06 2DLL
TITLE SOLUTION STRUCTURE OF THE IRF DOMAIN OF HUMAN INTERFERON TITLE 2 REGULATOR FACTORS 4
COMPND MOL_ID: 1; COMPND 2 MOLECULE: INTERFERON REGULATORY FACTOR 4; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: IRF DOMAIN, RESIDUES 8-115; COMPND 5 SYNONYM: IRF-4, LYMPHOCYTE-SPECIFIC INTERFERON REGULATORY COMPND 6 FACTOR, LSIRF, NF-EM5, MULTIPLE MYELOMA ONCOGENE 1; COMPND 7 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: IRF4, MUM1; SOURCE 6 EXPRESSION_SYSTEM: CELL FREE SYNTHESIS; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: P050516-06; SOURCE 9 OTHER_DETAILS: CELL FREE PROTEIN SYNTHESIS
KEYWDS IRF DOMAIN, INTERFERON REGULATORY FACTOR 4, LYMPHOCYTE KEYWDS 2 SPECIFIC INTERFERON REGULATORY FACTOR, NF-EM5, MULTIPLE KEYWDS 3 MYELOMA ONCOGENE 1, STRUCTURAL GENOMICS, NPPSFA, NATIONAL KEYWDS 4 PROJECT ON PROTEIN STRUCTURAL AND FUNCTIONAL ANALYSES, KEYWDS 5 RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI, KEYWDS 6 CYTOKINE
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR H.P.ZHANG,C.KUROSAKI,M.YOSHIDA,F.HAYASHI,S.YOKOYAMA,RIKEN AUTHOR 2 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI)
REVDAT 2 24-FEB-09 2DLL 1 VERSN REVDAT 1 20-OCT-06 2DLL 0
JRNL AUTH H.P.ZHANG,C.KUROSAKI,M.YOSHIDA,F.HAYASHI,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE IRF DOMAIN OF HUMAN JRNL TITL 2 INTERFERON REGULATOR FACTORS 4 JRNL REF TO BE PUBLISHED JRNL REFN
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 2.0.17 REMARK 3 AUTHORS : GUNTENT, P. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 2DLL COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 24-APR-06. REMARK 100 THE RCSB ID CODE IS RCSB025557.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 293 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.23MM 13C, 15N-LABELED REMARK 210 PROTEIN; 20MM D-TRIS- REMARK 210 HCL(PH7.0); 100MM NACL; 1MM D- REMARK 210 DTT; 0.02% NAN3; 90% H2O, 10% REMARK 210 D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY, 3D_ REMARK 210 13C-SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : VNMR 6.1C, NMRPIPE 20031121, REMARK 210 NMRVIEW 5.04, KUJIRA 0.93191, REMARK 210 CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION, STRUCTURES REMARK 210 WITH THE LOWEST ENERGY, REMARK 210 STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LYS A 44 170.42 -52.13 REMARK 500 1 LEU A 61 -38.21 -39.42 REMARK 500 1 SER A 89 107.70 -52.58 REMARK 500 1 VAL A 96 -28.81 -36.68 REMARK 500 1 PRO A 114 -172.07 -69.76 REMARK 500 2 ALA A 60 -32.30 -38.85 REMARK 500 2 ARG A 81 -37.97 -34.06 REMARK 500 2 ARG A 83 -37.87 -34.20 REMARK 500 2 VAL A 96 -25.76 -37.85 REMARK 500 3 TYR A 47 174.97 -58.81 REMARK 500 3 VAL A 96 -30.59 -35.42 REMARK 500 3 PRO A 114 -174.27 -69.79 REMARK 500 4 TYR A 47 176.41 -52.31 REMARK 500 4 ARG A 49 -61.09 -98.00 REMARK 500 4 VAL A 96 -30.50 -34.96 REMARK 500 4 PRO A 114 -176.41 -69.74 REMARK 500 5 TYR A 47 177.62 -57.17 REMARK 500 5 VAL A 96 -31.89 -35.36 REMARK 500 5 PRO A 114 -174.70 -69.75 REMARK 500 5 PRO A 118 6.50 -69.77 REMARK 500 6 TYR A 47 178.04 -51.99 REMARK 500 6 GLU A 50 -34.52 -34.74 REMARK 500 6 VAL A 96 -26.23 -37.88 REMARK 500 6 PRO A 114 -174.45 -69.82 REMARK 500 7 SER A 89 105.84 -52.10 REMARK 500 7 VAL A 96 -28.08 -35.08 REMARK 500 7 PRO A 114 -174.50 -69.77 REMARK 500 8 SER A 2 -60.79 -90.50 REMARK 500 8 ALA A 54 -39.03 -33.96 REMARK 500 8 SER A 89 102.08 -55.91 REMARK 500 8 VAL A 96 -34.71 -35.96 REMARK 500 8 PRO A 114 -175.96 -69.77 REMARK 500 8 PRO A 118 4.32 -69.77 REMARK 500 9 TYR A 47 174.76 -52.48 REMARK 500 9 SER A 89 102.35 -56.21 REMARK 500 10 SER A 89 107.73 -53.18 REMARK 500 10 PRO A 114 -178.68 -69.79 REMARK 500 11 PRO A 76 -18.93 -48.01 REMARK 500 11 VAL A 96 -30.37 -32.32 REMARK 500 11 PRO A 118 4.73 -69.76 REMARK 500 12 PRO A 114 -175.71 -69.73 REMARK 500 13 LEU A 9 -39.03 -33.67 REMARK 500 13 ARG A 83 -38.80 -34.71 REMARK 500 13 SER A 89 102.24 -53.84 REMARK 500 14 ARG A 49 32.01 39.64 REMARK 500 14 PRO A 114 -174.94 -69.68 REMARK 500 14 PRO A 118 5.36 -69.72 REMARK 500 15 LYS A 40 108.31 -56.61 REMARK 500 15 ALA A 42 101.96 -160.14 REMARK 500 15 SER A 89 104.89 -52.11 REMARK 500 15 PRO A 114 -178.10 -69.77 REMARK 500 15 PRO A 118 5.03 -69.76 REMARK 500 16 HIS A 41 -75.24 -54.09 REMARK 500 16 VAL A 96 -33.62 -33.09 REMARK 500 16 PRO A 114 -177.09 -69.74 REMARK 500 16 PRO A 118 8.29 -69.67 REMARK 500 17 ALA A 42 108.87 -56.62 REMARK 500 17 ASP A 46 -37.64 -37.54 REMARK 500 17 VAL A 96 -35.54 -31.98 REMARK 500 17 PRO A 114 -174.38 -69.72 REMARK 500 17 PRO A 118 -179.68 -69.73 REMARK 500 18 LEU A 86 -34.60 -33.48 REMARK 500 18 ASP A 91 -29.48 -38.42 REMARK 500 18 VAL A 96 -28.96 -35.72 REMARK 500 18 PRO A 114 -175.32 -69.76 REMARK 500 18 PRO A 118 94.86 -69.70 REMARK 500 19 VAL A 96 -32.79 -34.47 REMARK 500 19 PRO A 114 -172.15 -69.78 REMARK 500 19 PRO A 118 95.26 -69.78 REMARK 500 20 SER A 89 102.54 -53.48 REMARK 500 20 ASP A 91 -18.35 -49.52 REMARK 500 20 VAL A 96 -35.73 -31.99 REMARK 500 20 PRO A 114 -175.93 -69.69 REMARK 500 REMARK 500 REMARK: NULL
REMARK 650 REMARK 650 HELIX REMARK 650 DETERMINATION METHOD: AUTHOR DETERMINED
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSI002012141.1 RELATED DB: TARGETDB
DBREF 2DLL A 8 115 UNP Q15306 IRF4_HUMAN 22 130
SEQADV 2DLL GLY A 1 UNP Q15306 CLONING ARTIFACT SEQADV 2DLL SER A 2 UNP Q15306 CLONING ARTIFACT SEQADV 2DLL SER A 3 UNP Q15306 CLONING ARTIFACT SEQADV 2DLL GLY A 4 UNP Q15306 CLONING ARTIFACT SEQADV 2DLL SER A 5 UNP Q15306 CLONING ARTIFACT SEQADV 2DLL SER A 6 UNP Q15306 CLONING ARTIFACT SEQADV 2DLL GLY A 7 UNP Q15306 CLONING ARTIFACT SEQADV 2DLL SER A 116 UNP Q15306 CLONING ARTIFACT SEQADV 2DLL GLY A 117 UNP Q15306 CLONING ARTIFACT SEQADV 2DLL PRO A 118 UNP Q15306 CLONING ARTIFACT SEQADV 2DLL SER A 119 UNP Q15306 CLONING ARTIFACT SEQADV 2DLL SER A 120 UNP Q15306 CLONING ARTIFACT SEQADV 2DLL GLY A 121 UNP Q15306 CLONING ARTIFACT
SEQRES 1 A 121 GLY SER SER GLY SER SER GLY LYS LEU ARG GLN TRP LEU SEQRES 2 A 121 ILE ASP GLN ILE ASP SER GLY LYS TYR PRO GLY LEU VAL SEQRES 3 A 121 TRP GLU ASN GLU GLU LYS SER ILE PHE ARG ILE PRO TRP SEQRES 4 A 121 LYS HIS ALA GLY LYS GLN ASP TYR ASN ARG GLU GLU ASP SEQRES 5 A 121 ALA ALA LEU PHE LYS ALA TRP ALA LEU PHE LYS GLY LYS SEQRES 6 A 121 PHE ARG GLU GLY ILE ASP LYS PRO ASP PRO PRO THR TRP SEQRES 7 A 121 LYS THR ARG LEU ARG CYS ALA LEU ASN LYS SER ASN ASP SEQRES 8 A 121 PHE GLU GLU LEU VAL GLU ARG SER GLN LEU ASP ILE SER SEQRES 9 A 121 ASP PRO TYR LYS VAL TYR ARG ILE VAL PRO GLU SER GLY SEQRES 10 A 121 PRO SER SER GLY
HELIX 1 1 LEU A 9 SER A 19 1 11 HELIX 2 2 ARG A 49 ASP A 52 1 4 HELIX 3 3 ALA A 54 LYS A 63 1 10 HELIX 4 4 THR A 77 LYS A 88 1 12
SHEET 1 A 4 VAL A 26 TRP A 27 0 SHEET 2 A 4 ILE A 34 PRO A 38 -1 O ARG A 36 N VAL A 26 SHEET 3 A 4 TYR A 107 ILE A 112 -1 O LYS A 108 N ILE A 37 SHEET 4 A 4 PHE A 92 GLU A 94 -1 N GLU A 93 O ARG A 111
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000