10 20 30 40 50 60 70 80 2DKY - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER SIGNALING PROTEIN 14-APR-06 2DKY
TITLE SOLUTION STRUCTURE OF THE SAM-DOMAIN OF RHO-GTPASE- TITLE 2 ACTIVATING PROTEIN 7
COMPND MOL_ID: 1; COMPND 2 MOLECULE: RHO-GTPASE-ACTIVATING PROTEIN 7; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: SAM-DOMAIN; COMPND 5 SYNONYM: RHO-TYPE GTPASE-ACTIVATING PROTEIN 7, DELETED IN COMPND 6 LIVER CANCER 1 PROTEIN, DLC-1, HP PROTEIN, STAR-RELATED COMPND 7 LIPID TRANSFER PROTEIN 12, STARD12, START DOMAIN- COMPND 8 CONTAINING PROTEIN 12; COMPND 9 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: DLC1, ARHGAP7, KIAA1723, STARD12; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P050207-01; SOURCE 8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS
KEYWDS CELL-FREE PROTEIN SYNTHESIS, PROTEIN REGULATION, STRUCTURAL KEYWDS 2 GENOMICS, NPPSFA, NATIONAL PROJECT ON PROTEIN STRUCTURAL KEYWDS 3 AND FUNCTIONAL ANALYSES, RIKEN STRUCTURAL KEYWDS 4 GENOMICS/PROTEOMICS INITIATIVE, RSGI, SIGNALING PROTEIN
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR A.K.GORONCY,M.SATO,S.KOSHIBA,M.INOUE,T.KIGAWA,S.YOKOYAMA, AUTHOR 2 RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI)
REVDAT 2 24-FEB-09 2DKY 1 VERSN REVDAT 1 24-APR-07 2DKY 0
JRNL AUTH A.K.GORONCY,M.SATO,S.KOSHIBA,M.INOUE,T.KIGAWA, JRNL AUTH 2 S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE SAM-DOMAIN OF JRNL TITL 2 RHO-GTPASE-ACTIVATING PROTEIN 7 JRNL REF TO BE PUBLISHED JRNL REFN
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 2.0.17 REMARK 3 AUTHORS : P.GUNTERT ET AL. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 2DKY COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 19-APR-06. REMARK 100 THE RCSB ID CODE IS RCSB025538.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 296 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.08MM SAM DOMAIN, 20MM D- REMARK 210 TRIS-HCL, 100MM NACL, 1MM D- REMARK 210 DTT, 0.02% NAN3, 90% H2O, 10% REMARK 210 D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY, 3D_ REMARK 210 13C-SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CYANA 2.0.17, XWINNMR 3.5, REMARK 210 NMRPIPE 20031121, NMRVIEW REMARK 210 5.0.4, KUJIRA 0.899A REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 PRO A 13 86.54 -69.70 REMARK 500 1 ASP A 14 118.32 -174.79 REMARK 500 1 THR A 15 39.34 36.79 REMARK 500 1 PRO A 88 93.58 -69.73 REMARK 500 2 ARG A 10 46.89 -91.68 REMARK 500 2 HIS A 58 32.50 -96.32 REMARK 500 2 LEU A 61 161.30 -45.20 REMARK 500 2 LEU A 84 -74.19 -76.49 REMARK 500 2 GLU A 85 92.22 -49.76 REMARK 500 2 SER A 90 162.28 -45.95 REMARK 500 3 SER A 2 106.79 -169.38 REMARK 500 3 MET A 16 -53.58 -134.96 REMARK 500 3 LEU A 30 -35.22 -39.39 REMARK 500 3 PHE A 35 78.71 -109.81 REMARK 500 3 SER A 52 -37.44 -38.00 REMARK 500 3 HIS A 58 40.10 -99.07 REMARK 500 3 LEU A 61 163.25 -43.13 REMARK 500 3 MET A 82 -33.74 -34.17 REMARK 500 3 GLU A 85 107.18 -170.18 REMARK 500 4 ARG A 10 63.29 -116.66 REMARK 500 4 LYS A 12 78.62 -117.72 REMARK 500 4 THR A 15 40.91 34.03 REMARK 500 4 LEU A 61 163.18 -41.66 REMARK 500 4 GLU A 85 108.02 -166.53 REMARK 500 5 HIS A 58 50.67 -105.09 REMARK 500 5 LEU A 61 164.69 -46.74 REMARK 500 5 SER A 90 154.60 -44.21 REMARK 500 6 HIS A 58 44.82 -101.12 REMARK 500 6 SER A 86 43.57 -80.16 REMARK 500 7 ARG A 10 145.12 -174.20 REMARK 500 7 THR A 15 106.09 -39.40 REMARK 500 7 LEU A 30 -39.85 -35.78 REMARK 500 7 PHE A 35 78.79 -107.63 REMARK 500 7 PHE A 45 40.35 70.90 REMARK 500 7 HIS A 58 52.61 -101.60 REMARK 500 7 LEU A 61 166.11 -49.69 REMARK 500 7 MET A 82 -25.63 -39.89 REMARK 500 7 GLU A 85 -72.15 -36.47 REMARK 500 8 SER A 5 107.13 -166.83 REMARK 500 8 LEU A 61 165.60 -49.43 REMARK 500 8 LYS A 83 -38.97 -34.39 REMARK 500 9 PHE A 45 47.83 73.87 REMARK 500 9 LEU A 61 160.51 -46.40 REMARK 500 9 MET A 82 -31.46 -35.32 REMARK 500 10 SER A 6 106.38 -166.76 REMARK 500 10 LYS A 12 54.77 35.74 REMARK 500 10 THR A 15 40.74 -96.93 REMARK 500 10 LEU A 30 -35.36 -38.83 REMARK 500 10 PHE A 35 79.00 -107.53 REMARK 500 10 HIS A 58 43.48 -98.32 REMARK 500 10 PRO A 88 90.53 -69.74 REMARK 500 11 PRO A 13 -164.37 -69.75 REMARK 500 11 MET A 16 -61.53 -123.64 REMARK 500 11 SER A 52 -39.34 -39.43 REMARK 500 11 VAL A 54 -33.71 -37.75 REMARK 500 11 HIS A 58 40.85 -105.09 REMARK 500 11 LEU A 61 167.48 -49.92 REMARK 500 11 ALA A 80 -65.98 -95.26 REMARK 500 11 VAL A 81 -32.04 -39.60 REMARK 500 11 LYS A 83 -39.16 -32.87 REMARK 500 11 GLU A 85 159.53 -46.46 REMARK 500 11 PRO A 88 -171.51 -69.82 REMARK 500 12 HIS A 58 39.49 -91.57 REMARK 500 12 MET A 82 -25.72 -39.04 REMARK 500 12 SER A 86 76.75 -111.93 REMARK 500 13 SER A 6 42.05 -95.11 REMARK 500 13 SER A 52 -38.09 -39.58 REMARK 500 13 LEU A 61 161.69 -40.99 REMARK 500 13 MET A 82 -28.56 -37.15 REMARK 500 13 LEU A 84 -29.08 -38.96 REMARK 500 13 GLU A 85 47.24 34.45 REMARK 500 14 SER A 5 43.77 -100.84 REMARK 500 14 THR A 15 39.60 34.09 REMARK 500 14 HIS A 58 36.75 -97.09 REMARK 500 14 LEU A 61 160.87 -48.78 REMARK 500 14 SER A 86 -50.53 -129.31 REMARK 500 15 PRO A 13 1.38 -69.77 REMARK 500 15 HIS A 58 32.61 -99.23 REMARK 500 15 LEU A 61 164.49 -42.27 REMARK 500 15 MET A 82 -34.03 -37.46 REMARK 500 15 SER A 86 172.18 -50.53 REMARK 500 16 MET A 8 103.30 -49.62 REMARK 500 16 LYS A 11 145.56 -174.96 REMARK 500 16 LYS A 12 144.11 -174.97 REMARK 500 16 PRO A 13 2.83 -69.81 REMARK 500 16 ASP A 14 45.10 73.27 REMARK 500 16 LEU A 61 160.26 -44.07 REMARK 500 17 MET A 8 167.61 -45.36 REMARK 500 17 VAL A 54 -26.60 -37.97 REMARK 500 17 HIS A 58 44.46 -104.41 REMARK 500 17 MET A 82 -32.98 -34.15 REMARK 500 17 GLU A 85 113.63 -34.99 REMARK 500 17 SER A 90 94.59 -58.60 REMARK 500 18 SER A 3 93.82 -68.02 REMARK 500 18 CYS A 9 42.04 39.15 REMARK 500 18 PHE A 45 46.68 71.90 REMARK 500 18 HIS A 58 41.66 -102.54 REMARK 500 18 LEU A 61 165.38 -43.05 REMARK 500 18 MET A 82 -33.66 -34.01 REMARK 500 19 THR A 15 48.03 36.81 REMARK 500 19 HIS A 58 44.21 -98.80 REMARK 500 19 ARG A 71 -38.57 -37.72 REMARK 500 19 MET A 82 -28.14 -37.50 REMARK 500 20 LEU A 61 166.39 -46.04 REMARK 500 20 LEU A 69 -38.55 -39.74 REMARK 500 20 ARG A 71 -35.21 -38.50 REMARK 500 20 SER A 89 44.33 36.65 REMARK 500 REMARK 500 REMARK: NULL
DBREF 2DKY A 8 85 UNP Q96QB1 RHG07_HUMAN 1 78
SEQADV 2DKY GLY A 1 UNP Q96QB1 CLONING ARTIFACT SEQADV 2DKY SER A 2 UNP Q96QB1 CLONING ARTIFACT SEQADV 2DKY SER A 3 UNP Q96QB1 CLONING ARTIFACT SEQADV 2DKY GLY A 4 UNP Q96QB1 CLONING ARTIFACT SEQADV 2DKY SER A 5 UNP Q96QB1 CLONING ARTIFACT SEQADV 2DKY SER A 6 UNP Q96QB1 CLONING ARTIFACT SEQADV 2DKY GLY A 7 UNP Q96QB1 CLONING ARTIFACT SEQADV 2DKY SER A 86 UNP Q96QB1 CLONING ARTIFACT SEQADV 2DKY GLY A 87 UNP Q96QB1 CLONING ARTIFACT SEQADV 2DKY PRO A 88 UNP Q96QB1 CLONING ARTIFACT SEQADV 2DKY SER A 89 UNP Q96QB1 CLONING ARTIFACT SEQADV 2DKY SER A 90 UNP Q96QB1 CLONING ARTIFACT SEQADV 2DKY GLY A 91 UNP Q96QB1 CLONING ARTIFACT
SEQRES 1 A 91 GLY SER SER GLY SER SER GLY MET CYS ARG LYS LYS PRO SEQRES 2 A 91 ASP THR MET ILE LEU THR GLN ILE GLU ALA LYS GLU ALA SEQRES 3 A 91 CYS ASP TRP LEU ARG ALA THR GLY PHE PRO GLN TYR ALA SEQRES 4 A 91 GLN LEU TYR GLU ASP PHE LEU PHE PRO ILE ASP ILE SER SEQRES 5 A 91 LEU VAL LYS ARG GLU HIS ASP PHE LEU ASP ARG ASP ALA SEQRES 6 A 91 ILE GLU ALA LEU CYS ARG ARG LEU ASN THR LEU ASN LYS SEQRES 7 A 91 CYS ALA VAL MET LYS LEU GLU SER GLY PRO SER SER GLY
HELIX 1 1 THR A 15 GLY A 34 1 20 HELIX 2 2 GLN A 37 ASP A 44 1 8 HELIX 3 3 ASP A 50 HIS A 58 1 9 HELIX 4 4 ASP A 62 ALA A 80 1 19
CISPEP 1 PHE A 47 PRO A 48 1 -0.02 CISPEP 2 PHE A 47 PRO A 48 2 -0.07 CISPEP 3 PHE A 47 PRO A 48 3 0.00 CISPEP 4 PHE A 47 PRO A 48 4 -0.09 CISPEP 5 PHE A 47 PRO A 48 5 -0.06 CISPEP 6 PHE A 47 PRO A 48 6 -0.03 CISPEP 7 PHE A 47 PRO A 48 7 0.00 CISPEP 8 PHE A 47 PRO A 48 8 -0.02 CISPEP 9 PHE A 47 PRO A 48 9 -0.03 CISPEP 10 PHE A 47 PRO A 48 10 -0.05 CISPEP 11 PHE A 47 PRO A 48 11 0.01 CISPEP 12 PHE A 47 PRO A 48 12 0.00 CISPEP 13 PHE A 47 PRO A 48 13 0.02 CISPEP 14 PHE A 47 PRO A 48 14 0.03 CISPEP 15 PHE A 47 PRO A 48 15 0.01 CISPEP 16 PHE A 47 PRO A 48 16 0.03 CISPEP 17 PHE A 47 PRO A 48 17 0.01 CISPEP 18 PHE A 47 PRO A 48 18 -0.06 CISPEP 19 PHE A 47 PRO A 48 19 0.03 CISPEP 20 PHE A 47 PRO A 48 20 0.00
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000