10 20 30 40 50 60 70 80 2DKX - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER SIGNALING PROTEIN 14-APR-06 2DKX
TITLE SOLUTION STRUCTURE OF THE SAM_PNT-DOMAIN OF ETS TITLE 2 TRANSCRIPTION FACTOR PDEF (PROSTATE ETS)
COMPND MOL_ID: 1; COMPND 2 MOLECULE: SAM POINTED DOMAIN-CONTAINING ETS TRANSCRIPTION COMPND 3 FACTOR; COMPND 4 CHAIN: A; COMPND 5 FRAGMENT: SAM_PNT DOMAIN(RESIDUES 8-90); COMPND 6 SYNONYM: PROSTATE-DERIVED ETS FACTOR, PROSTATE EPITHELIUM- COMPND 7 SPECIFIC ETS TRANSCRIPTION FACTOR, PROSTATE-SPECIFIC ETS; COMPND 8 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SPDEF, PDEF, PSE; SOURCE 6 EXPRESSION_SYSTEM: CELL FREE SYNTHESIS; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: P041108-11; SOURCE 9 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS
KEYWDS CELL-FREE PROTEIN SYNTHESIS, PROTEIN REGULATION, STRUCTURAL KEYWDS 2 GENOMICS, NPPSFA, NATIONAL PROJECT ON PROTEIN STRUCTURAL KEYWDS 3 AND FUNCTIONAL ANALYSES, RIKEN STRUCTURAL KEYWDS 4 GENOMICS/PROTEOMICS INITIATIVE, RSGI, SIGNALING PROTEIN
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR A.K.GORONCY,M.SATO,S.KOSHIBA,M.INOUE,T.KIGAWA,S.YOKOYAMA, AUTHOR 2 RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI)
REVDAT 2 24-FEB-09 2DKX 1 VERSN REVDAT 1 14-OCT-06 2DKX 0
JRNL AUTH A.K.GORONCY,M.SATO,S.KOSHIBA,M.INOUE,T.KIGAWA, JRNL AUTH 2 S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE SAM_PNT-DOMAIN OF ETS JRNL TITL 2 TRANSCRIPTION FACTOR PDEF (PROSTATE ETS) JRNL REF TO BE PUBLISHED JRNL REFN
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 2.0.17 REMARK 3 AUTHORS : P.GUNTERT ET AL. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 2DKX COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 19-APR-06. REMARK 100 THE RCSB ID CODE IS RCSB025537.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 296 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.15MM SAM_PNT DOMAIN, 20MM D REMARK 210 -TRIS-HCL, 100MM NACL, 1MM D- REMARK 210 DTT, 0.02% NAN3 REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY, 3D_ REMARK 210 13C-SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CYANA 2.0.17, XWINNMR 2.6, REMARK 210 NMRPIPE 20031121, NMRVIEW REMARK 210 5.0.4, KUJIRA 0.899A REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 6 159.69 -44.72 REMARK 500 1 TRP A 27 104.14 -51.79 REMARK 500 1 TRP A 38 -73.41 -62.83 REMARK 500 1 ASP A 77 -37.69 -39.98 REMARK 500 1 SER A 91 36.15 -89.75 REMARK 500 2 SER A 6 174.70 -50.29 REMARK 500 2 TRP A 27 106.35 -53.68 REMARK 500 2 LEU A 37 -18.28 -49.55 REMARK 500 2 TRP A 38 -73.09 -70.33 REMARK 500 2 PRO A 47 98.10 -69.73 REMARK 500 2 SER A 91 37.96 -90.69 REMARK 500 3 SER A 2 41.93 70.17 REMARK 500 3 TRP A 27 101.80 -51.59 REMARK 500 3 LEU A 36 -70.03 -82.69 REMARK 500 3 TRP A 38 -73.26 -65.18 REMARK 500 3 SER A 91 36.77 -88.75 REMARK 500 3 SER A 95 42.54 37.49 REMARK 500 4 SER A 91 32.05 -84.34 REMARK 500 5 SER A 2 109.89 -45.94 REMARK 500 5 TRP A 38 -73.24 -65.98 REMARK 500 5 ASP A 77 -39.42 -38.69 REMARK 500 6 SER A 6 179.93 -56.44 REMARK 500 6 TRP A 27 104.99 -48.72 REMARK 500 6 TRP A 38 -73.25 -68.35 REMARK 500 6 LEU A 79 -70.76 -62.12 REMARK 500 6 SER A 91 33.80 -86.44 REMARK 500 7 TRP A 27 104.09 -50.25 REMARK 500 7 TRP A 38 -72.67 -63.53 REMARK 500 7 SER A 91 35.68 -84.29 REMARK 500 8 SER A 3 152.13 -47.61 REMARK 500 8 TRP A 27 104.13 -51.95 REMARK 500 8 LEU A 36 -71.91 -78.28 REMARK 500 8 TRP A 38 -73.36 -61.16 REMARK 500 8 PRO A 47 98.36 -69.73 REMARK 500 8 SER A 91 40.93 -104.62 REMARK 500 9 SER A 6 172.66 -53.68 REMARK 500 9 TRP A 27 98.90 -48.54 REMARK 500 9 LEU A 36 -70.87 -73.85 REMARK 500 9 TRP A 38 -73.33 -64.33 REMARK 500 9 PRO A 47 97.14 -69.77 REMARK 500 9 LEU A 79 -70.07 -62.36 REMARK 500 9 SER A 91 40.80 -101.16 REMARK 500 10 TRP A 27 105.52 -50.65 REMARK 500 10 TRP A 38 -73.37 -63.93 REMARK 500 10 PRO A 47 99.69 -69.71 REMARK 500 10 SER A 91 38.26 -89.05 REMARK 500 11 TRP A 27 105.65 -56.19 REMARK 500 11 LEU A 36 -70.59 -82.82 REMARK 500 11 TRP A 38 -73.27 -63.39 REMARK 500 11 PRO A 47 99.98 -69.80 REMARK 500 11 SER A 91 38.09 -90.42 REMARK 500 12 TRP A 27 107.92 -54.62 REMARK 500 12 TRP A 38 -73.31 -68.33 REMARK 500 12 PRO A 47 96.94 -69.76 REMARK 500 12 SER A 91 33.02 -87.19 REMARK 500 13 TRP A 27 108.23 -52.50 REMARK 500 13 TRP A 38 -73.33 -63.36 REMARK 500 13 PRO A 47 97.59 -69.85 REMARK 500 13 SER A 91 36.81 -88.07 REMARK 500 14 SER A 5 169.75 -45.31 REMARK 500 14 SER A 6 77.76 -112.00 REMARK 500 14 TRP A 27 90.52 -53.08 REMARK 500 14 LEU A 36 -72.09 -68.98 REMARK 500 14 TRP A 38 -73.10 -56.56 REMARK 500 14 PRO A 47 99.13 -69.77 REMARK 500 14 SER A 91 38.36 -90.07 REMARK 500 15 TRP A 27 97.55 -50.21 REMARK 500 15 TRP A 38 -73.68 -70.83 REMARK 500 15 PRO A 47 95.93 -69.75 REMARK 500 15 SER A 91 39.43 -88.50 REMARK 500 15 SER A 94 44.16 -108.94 REMARK 500 16 TRP A 27 106.35 -55.95 REMARK 500 16 TRP A 38 -72.50 -67.16 REMARK 500 16 PRO A 47 99.50 -69.73 REMARK 500 17 SER A 2 -43.25 -131.92 REMARK 500 17 PRO A 47 98.31 -69.81 REMARK 500 17 SER A 91 33.85 -84.21 REMARK 500 18 TRP A 27 109.05 -54.16 REMARK 500 18 LEU A 36 -72.86 -76.00 REMARK 500 18 TRP A 38 -73.18 -55.23 REMARK 500 18 PRO A 47 97.51 -69.73 REMARK 500 18 SER A 91 36.21 -83.91 REMARK 500 19 SER A 3 -62.64 -90.96 REMARK 500 19 TRP A 27 104.35 -49.31 REMARK 500 19 LEU A 37 -19.52 -49.54 REMARK 500 19 TRP A 38 -72.91 -67.49 REMARK 500 19 PRO A 47 97.61 -69.74 REMARK 500 19 SER A 91 39.08 -99.68 REMARK 500 19 SER A 95 42.20 -103.41 REMARK 500 20 TRP A 27 109.65 -50.35 REMARK 500 20 TRP A 38 -70.18 -70.97 REMARK 500 20 PRO A 47 98.46 -69.72 REMARK 500 20 SER A 91 31.86 -96.21 REMARK 500 20 SER A 94 155.29 -39.74 REMARK 500 REMARK 500 REMARK: NULL
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSI002012673.1 RELATED DB: TARGETDB
DBREF 2DKX A 8 90 UNP O95238 SPDEF_HUMAN 131 213
SEQADV 2DKX GLY A 1 UNP O95238 CLONING ARTIFACT SEQADV 2DKX SER A 2 UNP O95238 CLONING ARTIFACT SEQADV 2DKX SER A 3 UNP O95238 CLONING ARTIFACT SEQADV 2DKX GLY A 4 UNP O95238 CLONING ARTIFACT SEQADV 2DKX SER A 5 UNP O95238 CLONING ARTIFACT SEQADV 2DKX SER A 6 UNP O95238 CLONING ARTIFACT SEQADV 2DKX GLY A 7 UNP O95238 CLONING ARTIFACT SEQADV 2DKX SER A 91 UNP O95238 CLONING ARTIFACT SEQADV 2DKX GLY A 92 UNP O95238 CLONING ARTIFACT SEQADV 2DKX PRO A 93 UNP O95238 CLONING ARTIFACT SEQADV 2DKX SER A 94 UNP O95238 CLONING ARTIFACT SEQADV 2DKX SER A 95 UNP O95238 CLONING ARTIFACT SEQADV 2DKX GLY A 96 UNP O95238 CLONING ARTIFACT
SEQRES 1 A 96 GLY SER SER GLY SER SER GLY LEU LYS ASP ILE GLU THR SEQRES 2 A 96 ALA CYS LYS LEU LEU ASN ILE THR ALA ASP PRO MET ASP SEQRES 3 A 96 TRP SER PRO SER ASN VAL GLN LYS TRP LEU LEU TRP THR SEQRES 4 A 96 GLU HIS GLN TYR ARG LEU PRO PRO MET GLY LYS ALA PHE SEQRES 5 A 96 GLN GLU LEU ALA GLY LYS GLU LEU CYS ALA MET SER GLU SEQRES 6 A 96 GLU GLN PHE ARG GLN ARG SER PRO LEU GLY GLY ASP VAL SEQRES 7 A 96 LEU HIS ALA HIS LEU ASP ILE TRP LYS SER ALA ALA SER SEQRES 8 A 96 GLY PRO SER SER GLY
HELIX 1 1 LEU A 8 LEU A 17 1 10 HELIX 2 2 ASP A 23 TRP A 27 5 5 HELIX 3 3 ASN A 31 TYR A 43 1 13 HELIX 4 4 MET A 48 GLN A 53 1 6 HELIX 5 5 ALA A 56 MET A 63 1 8 HELIX 6 6 SER A 64 SER A 72 1 9 HELIX 7 7 GLY A 76 SER A 91 1 16
CISPEP 1 SER A 28 PRO A 29 1 -0.12 CISPEP 2 SER A 28 PRO A 29 2 -0.10 CISPEP 3 SER A 28 PRO A 29 3 -0.15 CISPEP 4 SER A 28 PRO A 29 4 -0.08 CISPEP 5 SER A 28 PRO A 29 5 -0.05 CISPEP 6 SER A 28 PRO A 29 6 -0.12 CISPEP 7 SER A 28 PRO A 29 7 -0.09 CISPEP 8 SER A 28 PRO A 29 8 -0.14 CISPEP 9 SER A 28 PRO A 29 9 -0.04 CISPEP 10 SER A 28 PRO A 29 10 -0.11 CISPEP 11 SER A 28 PRO A 29 11 0.03 CISPEP 12 SER A 28 PRO A 29 12 -0.01 CISPEP 13 SER A 28 PRO A 29 13 -0.17 CISPEP 14 SER A 28 PRO A 29 14 -0.12 CISPEP 15 SER A 28 PRO A 29 15 -0.08 CISPEP 16 SER A 28 PRO A 29 16 -0.08 CISPEP 17 SER A 28 PRO A 29 17 -0.09 CISPEP 18 SER A 28 PRO A 29 18 -0.09 CISPEP 19 SER A 28 PRO A 29 19 -0.10 CISPEP 20 SER A 28 PRO A 29 20 -0.04
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000